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Building cesm1.2.2 on redhat 7

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spamiad@...
Building cesm1.2.2 on redhat 7

I cannot pass the build step receiving errors. Below is the config log.

Thank you for any help!

 

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by MCT configure 2.8, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /home/dominik/cesm1_2_2/models/utils/mct/configure CC=gcc  FC=gfortran  MPICC=mpicc   MPIFC=mpif90  FCFLAGS=-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr CPPDEFS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  CFLAGS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr NETCDF_PATH= LDFLAGS= LIBS= -netcdf --srcdir /home/dominik/cesm1_2_2/models/utils/mct

## --------- ##
## Platform. ##
## --------- ##

hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.10.0-123.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Mon Jun 30 12:09:22 UTC 2014

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/bin
PATH: /usr/local/sbin
PATH: /usr/bin
PATH: /usr/sbin
PATH: /bin
PATH: /sbin
PATH: /home/dominik/.local/bin
PATH: /home/dominik/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2358: checking for C compiler version
configure:2367: gcc  --version >&5
gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2378: $? = 0
configure:2367: gcc  -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
configure:2378: $? = 0
configure:2367: gcc  -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2367: gcc  -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2398: checking whether the C compiler works
configure:2420: gcc   -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c  -netcdf >&5
gcc: error: unrecognized command line option '-netcdf'
configure:2424: $? = 1
configure:2462: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
|
| int
| main ()
| {
|
|   ;
|   return 0;
| }
configure:2467: error: in `/home/dominik/gnu/openmpi/nodebug/nothreads/mct':
configure:2469: error: C compiler cannot create executables
See `config.log' for more details

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_env_AR_set=
ac_cv_env_AR_value=
ac_cv_env_BABELROOT_set=
ac_cv_env_BABELROOT_value=
ac_cv_env_BIT64_set=
ac_cv_env_BIT64_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value='gcc '
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_COMPILER_ROOT_set=
ac_cv_env_COMPILER_ROOT_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_DEBUG_set=set
ac_cv_env_DEBUG_value=FALSE
ac_cv_env_ENDIAN_set=
ac_cv_env_ENDIAN_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_FC_set=set
ac_cv_env_FC_value='gfortran '
ac_cv_env_FORT_SIZE_set=
ac_cv_env_FORT_SIZE_value=
ac_cv_env_FPPFLAGS_set=
ac_cv_env_FPPFLAGS_value=
ac_cv_env_FPP_set=
ac_cv_env_FPP_value=
ac_cv_env_INCLUDEFLAG_set=
ac_cv_env_INCLUDEFLAG_value=
ac_cv_env_INCLUDEPATH_set=
ac_cv_env_INCLUDEPATH_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value=' -netcdf'
ac_cv_env_MPIFC_set=set
ac_cv_env_MPIFC_value='mpif90 '
ac_cv_env_MPIHEADER_set=
ac_cv_env_MPIHEADER_value=
ac_cv_env_MPILIBS_set=set
ac_cv_env_MPILIBS_value=openmpi,mpich,mpt,mpt,ibm,mpi-serial
ac_cv_env_OPT_set=
ac_cv_env_OPT_value=
ac_cv_env_PROGFCFLAGS_set=
ac_cv_env_PROGFCFLAGS_value=
ac_cv_env_RANLIB_set=
ac_cv_env_RANLIB_value=
ac_cv_env_REAL8_set=
ac_cv_env_REAL8_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=

## ----------------- ##
## Output variables. ##
## ----------------- ##

AR=''
BABELROOT=''
BIT64=''
CC='gcc '
CFLAGS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
COMPILER_ROOT=''
CPP=''
CPPDEFS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU '
CPPFLAGS=''
CRULE=''
DEBUG='FALSE'
DEFS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENDIAN=''
EXEEXT=''
FC='gfortran '
FCFLAGS='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
FCFLAGS_F90=''
FCFLAGS_F=''
FCLIBS=''
FC_DEFINE=''
FORT_SIZE=''
FPP=''
FPPFLAGS=''
GREP=''
INCLUDEFLAG=''
INCLUDEPATH=''
LDFLAGS=''
LIBOBJS=''
LIBS=' -netcdf'
LTLIBOBJS=''
MPIFC='mpif90 '
MPIHEADER=''
MPILIBS='openmpi,mpich,mpt,mpt,ibm,mpi-serial'
MPISERPATH=''
OBJEXT=''
OPT=''
PACKAGE_BUGREPORT=''
PACKAGE_NAME='MCT'
PACKAGE_STRING='MCT 2.8'
PACKAGE_TARNAME='mct'
PACKAGE_URL=''
PACKAGE_VERSION='2.8'
PATH_SEPARATOR=':'
PROGFCFLAGS=''
PYTHON=''
PYTHONOPTS=''
RANLIB=''
REAL8=''
SHELL='/bin/sh'
ac_ct_CC=''
ac_ct_FC=''
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "MCT"
#define PACKAGE_TARNAME "mct"
#define PACKAGE_VERSION "2.8"
#define PACKAGE_STRING "MCT 2.8"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""

configure: exit 77

jedwards

The problem is here:

> NETCDF_PATH= LDFLAGS= LIBS= -netcdf --srcdir /home/dominik/cesm1_2_2/models/utils/mct

 

You need to have a path to where you have NetCDF installed in NETCDF_PATH

then LIBS should be -L$NETCDF_PATH/lib -lnetcdff -lnetcdf

CESM Software Engineer

spamiad@...

Thank you a lot, I now set NETCDF_PATH to usr/lib64 where i located the ncdf files.

My updated output is now below with some new errors. I am quite new to this ... :/

 

 

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by MCT configure 2.8, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /home/dominik/cesm1_2_2/models/utils/mct/configure CC=gcc  FC=gfortran  MPICC=mpicc   MPIFC=mpif90  FCFLAGS=-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr CPPDEFS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  CFLAGS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr NETCDF_PATH=/usr/lib64/ LDFLAGS= LIBS=-L/usr/lib64/ -lnetcdff -lnetcdf  --srcdir /home/dominik/cesm1_2_2/models/utils/mct

## --------- ##
## Platform. ##
## --------- ##

hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.10.0-123.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Mon Jun 30 12:09:22 UTC 2014

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/bin
PATH: /usr/local/sbin
PATH: /usr/bin
PATH: /usr/sbin
PATH: /bin
PATH: /sbin
PATH: /home/dominik/.local/bin
PATH: /home/dominik/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2358: checking for C compiler version
configure:2367: gcc  --version >&5
gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2378: $? = 0
configure:2367: gcc  -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
configure:2378: $? = 0
configure:2367: gcc  -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2367: gcc  -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2398: checking whether the C compiler works
configure:2420: gcc   -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
configure:2424: $? = 0
configure:2472: result: yes
configure:2475: checking for C compiler default output file name
configure:2477: result: a.out
configure:2483: checking for suffix of executables
configure:2490: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
configure:2494: $? = 0
configure:2516: result:
configure:2538: checking whether we are cross compiling
configure:2546: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
configure:2550: $? = 0
configure:2557: ./conftest
configure:2561: $? = 0
configure:2576: result: no
configure:2581: checking for suffix of object files
configure:2603: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:2607: $? = 0
configure:2628: result: o
configure:2632: checking whether we are using the GNU C compiler
configure:2651: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:2651: $? = 0
configure:2660: result: yes
configure:2669: checking whether gcc  accepts -g
configure:2689: gcc  -c -g  conftest.c >&5
configure:2689: $? = 0
configure:2730: result: yes
configure:2747: checking for gcc  option to accept ISO C89
configure:2810: gcc   -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:2810: $? = 0
configure:2823: result: none needed
configure:2851: checking how to run the C preprocessor
configure:2882: gcc  -E  conftest.c
configure:2882: $? = 0
configure:2896: gcc  -E  conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:2896: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:2921: result: gcc  -E
configure:2941: gcc  -E  conftest.c
configure:2941: $? = 0
configure:2955: gcc  -E  conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:2955: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:2984: checking for grep that handles long lines and -e
configure:3042: result: /usr/bin/grep
configure:3047: checking for egrep
configure:3109: result: /usr/bin/grep -E
configure:3114: checking for ANSI C header files
configure:3134: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3134: $? = 0
configure:3207: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
configure:3207: $? = 0
configure:3207: ./conftest
configure:3207: $? = 0
configure:3218: result: yes
configure:3231: checking for sys/types.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for sys/stat.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for stdlib.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for string.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for memory.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for strings.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for inttypes.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for stdint.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3231: checking for unistd.h
configure:3231: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3231: $? = 0
configure:3231: result: yes
configure:3243: checking whether byte ordering is bigendian
configure:3258: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
conftest.c:20:9: error: unknown type name 'not'
         not a universal capable compiler
         ^
conftest.c:20:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
         not a universal capable compiler
               ^
conftest.c:20:15: error: unknown type name 'universal'
configure:3258: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #ifndef __APPLE_CC__
|            not a universal capable compiler
|          #endif
|          typedef int dummy;
|
configure:3303: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
configure:3303: $? = 0
configure:3321: gcc  -c  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.c >&5
conftest.c: In function 'main':
conftest.c:26:4: error: unknown type name 'not'
    not big endian
    ^
conftest.c:26:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
    not big endian
            ^
configure:3321: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <sys/types.h>
|         #include <sys/param.h>
|
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
|          not big endian
|         #endif
|
|   ;
|   return 0;
| }
configure:3449: result: no
configure:3576: checking for Fortran compiler version
configure:3585: gfortran  --version >&5
GNU Fortran (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
Copyright (C) 2013 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:3596: $? = 0
configure:3585: gfortran  -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
configure:3596: $? = 0
configure:3585: gfortran  -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:3596: $? = 4
configure:3585: gfortran  -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:3596: $? = 4
configure:3605: checking whether we are using the GNU Fortran compiler
configure:3618: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:3618: $? = 0
configure:3627: result: yes
configure:3633: checking whether gfortran  accepts -g
configure:3644: gfortran  -c -g  conftest.f >&5
configure:3644: $? = 0
configure:3652: result: yes
configure:3694: checking for Fortran flag to compile .F90 files
configure:3714: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F90 >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:3714: $? = 0
configure:3723: result: none
configure:3762: checking for mpif90
configure:3789: result: mpif90
configure:3945: checking for mpif.h
configure:3952: mpif90  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F90 >&5
/home/dominik/cesm1_2_2/models/utils/mct/configure: line 1636: mpif90: command not found
configure:3952: $? = 127
configure: failed program was:
|       program main
|       include 'mpif.h'
|       end
configure:3957: result: no
configure:4023: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F90 >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4023: $? = 0
configure:4038: checking how to get the version output from gfortran
configure:4049: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F90 >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4049: $? = 0
configure:4068: gfortran  -o conftest -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -V   conftest.F90 -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
gfortran: error: unrecognized command line option '-V'
configure:4068: gfortran  -o conftest -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -version   conftest.F90 -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
gfortran: error: unrecognized command line option '-version'
configure:4068: gfortran  -o conftest -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr --version   conftest.F90 -L/usr/lib64/ -lnetcdff -lnetcdf  >&5
GNU Fortran (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
Copyright (C) 2013 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
configure:4100: result: --version
configure:4121: checking for Fortran flag to compile preprocessed .F files
configure:4146: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4146: $? = 0
configure:4156: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
conftest.F:4:0: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
 ^
compilation terminated.
configure:4156: $? = 1
configure: failed program was:
|       program main
|
| #if 1
| #include <ac_nonexistent.h>
|       choke me
| #endif
|       end
configure:4169: result: none
configure:4190: checking how to define symbols for preprocessed Fortran
configure:4212: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -DFOOBAR -DZORK=42  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4212: $? = 0
configure:4221: result: -D
configure:4246: checking how to get verbose linking output from gfortran
configure:4256: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4256: $? = 0
configure:4274: gfortran -o conftest -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -ffree-form -I. -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -v conftest.F -L/usr/lib64/ -lnetcdff -lnetcdf
Using built-in specs.
Target: x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
 /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/f951 conftest.F -cpp=/tmp/ccVDZnUp.f90 -quiet -v -I . -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I /usr/lib64//include -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik/cesm1_2_2/models/csm_share/shr conftest.F -quiet -dumpbase conftest.F -mtune=generic -march=x86-64 -auxbase conftest -O -version -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -ffree-form -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.8.2/finclude -o /tmp/ccGJ1qfE.s
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
GNU Fortran (GCC) version 4.8.2 20140120 (Red Hat 4.8.2-16) (x86_64-redhat-linux)
    compiled by GNU C version 4.8.2 20140120 (Red Hat 4.8.2-16), GMP version 5.1.1, MPFR version 3.1.1, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.2/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../x86_64-redhat-linux/include"
ignoring nonexistent directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
ignoring nonexistent directory "/usr/lib64//include"
ignoring duplicate directory "/home/dominik//gnu/openmpi/nodebug/nothreads/include"
#include "..." search starts here:
#include <...> search starts here:
 .
 /home/dominik//gnu/openmpi/nodebug/nothreads/include
 /home/dominik/cesm1_2_2/models/csm_share/shr
 /usr/lib/gcc/x86_64-redhat-linux/4.8.2/finclude
 /usr/lib/gcc/x86_64-redhat-linux/4.8.2/include
 /usr/local/include
 /usr/include
End of search list.
GNU Fortran (GCC) version 4.8.2 20140120 (Red Hat 4.8.2-16) (x86_64-redhat-linux)
    compiled by GNU C version 4.8.2 20140120 (Red Hat 4.8.2-16), GMP version 5.1.1, MPFR version 3.1.1, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -v -I . -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I /usr/lib64//include -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik/cesm1_2_2/models/csm_share/shr --64 -o /tmp/ccTSgACS.o /tmp/ccGJ1qfE.s
GNU assembler version 2.23.52.0.1 (x86_64-redhat-linux) using BFD version version 2.23.52.0.1-16.el7 20130226
Reading specs from /usr/lib/gcc/x86_64-redhat-linux/4.8.2/libgfortran.spec
rename spec lib to liborig
 /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/crtbegin.o -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. /tmp/ccTSgACS.o -lnetcdff -lnetcdf -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.8.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crtn.o
configure:4357: result: -v
configure:4359: checking for Fortran libraries of gfortran
configure:4382: gfortran -o conftest -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -ffree-form -I. -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -v conftest.F -L/usr/lib64/ -lnetcdff -lnetcdf
Using built-in specs.
Target: x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
 /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/f951 conftest.F -cpp=/tmp/ccoV6KCw.f90 -quiet -v -I . -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I /usr/lib64//include -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik/cesm1_2_2/models/csm_share/shr conftest.F -quiet -dumpbase conftest.F -mtune=generic -march=x86-64 -auxbase conftest -O -version -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -ffree-form -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.8.2/finclude -o /tmp/ccv2LpgL.s
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
GNU Fortran (GCC) version 4.8.2 20140120 (Red Hat 4.8.2-16) (x86_64-redhat-linux)
    compiled by GNU C version 4.8.2 20140120 (Red Hat 4.8.2-16), GMP version 5.1.1, MPFR version 3.1.1, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.2/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../x86_64-redhat-linux/include"
ignoring nonexistent directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
ignoring nonexistent directory "/usr/lib64//include"
ignoring duplicate directory "/home/dominik//gnu/openmpi/nodebug/nothreads/include"
#include "..." search starts here:
#include <...> search starts here:
 .
 /home/dominik//gnu/openmpi/nodebug/nothreads/include
 /home/dominik/cesm1_2_2/models/csm_share/shr
 /usr/lib/gcc/x86_64-redhat-linux/4.8.2/finclude
 /usr/lib/gcc/x86_64-redhat-linux/4.8.2/include
 /usr/local/include
 /usr/include
End of search list.
GNU Fortran (GCC) version 4.8.2 20140120 (Red Hat 4.8.2-16) (x86_64-redhat-linux)
    compiled by GNU C version 4.8.2 20140120 (Red Hat 4.8.2-16), GMP version 5.1.1, MPFR version 3.1.1, MPC version 1.0.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -v -I . -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I /usr/lib64//include -I /home/dominik//gnu/openmpi/nodebug/nothreads/include -I /home/dominik/cesm1_2_2/models/csm_share/shr --64 -o /tmp/ccj1BSVZ.o /tmp/ccv2LpgL.s
GNU assembler version 2.23.52.0.1 (x86_64-redhat-linux) using BFD version version 2.23.52.0.1-16.el7 20130226
Reading specs from /usr/lib/gcc/x86_64-redhat-linux/4.8.2/libgfortran.spec
rename spec lib to liborig
 /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/crtbegin.o -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. /tmp/ccj1BSVZ.o -lnetcdff -lnetcdf -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.8.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64/crtn.o
configure:4574: result:  -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath
configure:4590: checking for dummy main to link with Fortran libraries
configure:4624: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdff -lnetcdf   -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath >&5
configure:4624: $? = 0
configure:4669: result: none
configure:4702: checking for Fortran name-mangling scheme
configure:4715: gfortran  -c -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr  conftest.F >&5
Warning: Nonexistent include directory "/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share"
Warning: Nonexistent include directory "/usr/lib64//include"
configure:4715: $? = 0
configure:4756: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c cfortran_test.o -L/usr/lib64/ -lnetcdff -lnetcdf   -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath >&5
/tmp/ccn69677.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:4756: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return foobar ();
|   ;
|   return 0;
| }
configure:4756: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c cfortran_test.o -L/usr/lib64/ -lnetcdff -lnetcdf   -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath >&5
configure:4756: $? = 0
configure:4814: gcc  -o conftest  -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c cfortran_test.o -L/usr/lib64/ -lnetcdff -lnetcdf   -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath >&5
configure:4814: $? = 0
configure:4856: result: lower case, underscore, no extra underscore
configure:5319: checking for ranlib
configure:5335: found /usr/bin/ranlib
configure:5346: result: ranlib
configure:5498: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by MCT config.status 2.8, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    =
  CONFIG_HEADERS  =
  CONFIG_LINKS    =
  CONFIG_COMMANDS =
  $ ./config.status

on localhost.localdomain

config.status:836: creating Makefile.conf
config.status:836: creating config.h

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_env_AR_set=
ac_cv_env_AR_value=
ac_cv_env_BABELROOT_set=
ac_cv_env_BABELROOT_value=
ac_cv_env_BIT64_set=
ac_cv_env_BIT64_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value='gcc '
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_COMPILER_ROOT_set=
ac_cv_env_COMPILER_ROOT_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_DEBUG_set=set
ac_cv_env_DEBUG_value=FALSE
ac_cv_env_ENDIAN_set=
ac_cv_env_ENDIAN_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_FC_set=set
ac_cv_env_FC_value='gfortran '
ac_cv_env_FORT_SIZE_set=
ac_cv_env_FORT_SIZE_value=
ac_cv_env_FPPFLAGS_set=
ac_cv_env_FPPFLAGS_value=
ac_cv_env_FPP_set=
ac_cv_env_FPP_value=
ac_cv_env_INCLUDEFLAG_set=
ac_cv_env_INCLUDEFLAG_value=
ac_cv_env_INCLUDEPATH_set=
ac_cv_env_INCLUDEPATH_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value='-L/usr/lib64/ -lnetcdff -lnetcdf '
ac_cv_env_MPIFC_set=set
ac_cv_env_MPIFC_value='mpif90 '
ac_cv_env_MPIHEADER_set=
ac_cv_env_MPIHEADER_value=
ac_cv_env_MPILIBS_set=set
ac_cv_env_MPILIBS_value=openmpi,mpich,mpt,mpt,ibm,mpi-serial
ac_cv_env_OPT_set=
ac_cv_env_OPT_value=
ac_cv_env_PROGFCFLAGS_set=
ac_cv_env_PROGFCFLAGS_value=
ac_cv_env_RANLIB_set=
ac_cv_env_RANLIB_value=
ac_cv_env_REAL8_set=
ac_cv_env_REAL8_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_pp_define=-D
ac_cv_fc_pp_srcext_F=none
ac_cv_fc_srcext_F90=none
ac_cv_fortran_dummy_main=none
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_prog_CPP='gcc  -E'
ac_cv_prog_MPIFC='mpif90 '
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_fc_version=--version

## ----------------- ##
## Output variables. ##
## ----------------- ##

AR='ar cq'
BABELROOT=''
BIT64=''
CC='gcc '
CFLAGS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
COMPILER_ROOT=''
CPP='gcc  -E'
CPPDEFS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -DSYSLINUX -DCPRGNU'
CPPFLAGS=''
CRULE='.c.o'
DEBUG=''
DEFS='-DHAVE_CONFIG_H'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
ENDIAN=''
EXEEXT=''
FC='gfortran '
FCFLAGS='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -ffree-form  -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
FCFLAGS_F90=''
FCFLAGS_F=''
FCLIBS=' -L/usr/lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.2/../../.. -lnetcdff -lnetcdf -lgfortran -lm -lquadmath'
FC_DEFINE='-D'
FORT_SIZE=''
FPP=''
FPPFLAGS=''
GREP='/usr/bin/grep'
INCLUDEFLAG='-I'
INCLUDEPATH=''
LDFLAGS=''
LIBOBJS=''
LIBS='-L/usr/lib64/ -lnetcdff -lnetcdf '
LTLIBOBJS=''
MPIFC='mpif90 '
MPIHEADER=''
MPILIBS=''
MPISERPATH=''
OBJEXT='o'
OPT='-O2'
PACKAGE_BUGREPORT=''
PACKAGE_NAME='MCT'
PACKAGE_STRING='MCT 2.8'
PACKAGE_TARNAME='mct'
PACKAGE_URL=''
PACKAGE_VERSION='2.8'
PATH_SEPARATOR=':'
PROGFCFLAGS=''
PYTHON=''
PYTHONOPTS=''
RANLIB='ranlib'
REAL8=''
SHELL='/bin/sh'
ac_ct_CC=''
ac_ct_FC=''
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "MCT"
#define PACKAGE_TARNAME "mct"
#define PACKAGE_VERSION "2.8"
#define PACKAGE_STRING "MCT 2.8"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _

configure: exit 0

jedwards

I don't see any error here, failed tests in config.log are to be expected.   Where does your build stop now?

CESM Software Engineer

jedwards

I don't see any error here, failed tests in config.log are to be expected.   Where does your build stop now?

CESM Software Engineer

spamiad@...

I moved on a bit by mostly updating Path with relevant directories and am currently stuck at this point.

 

Sun 18 Jan 11:14:03 GMT 2015 /home/dominik//gnu/openmpi/nodebug/nothreads/csm_share.bldlog.150118-111350
cat: Srcfiles: No such file or directory
/home/dominik/cesm1_2_2/scripts/test1/Tools/mkSrcfiles
cp -f /home/dominik/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/Filepath /home/dominik/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/Deppath
/home/dominik/cesm1_2_2/scripts/test1/Tools/mkDepends  Deppath Srcfiles > /home/dominik/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/Depends
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_BaseMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_BaseTimeMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_CalendarMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_Stubs.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_ShrTimeMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_FractionMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_TimeIntervalMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_TimeMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/MeatMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_AlarmMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_ClockMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF_AlarmClockMod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr/ESMF.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_kind_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/dead_share/dead_data_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_log_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_mpi_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
/home/dominik/cesm1_2_2/models/csm_share/shr/shr_mpi_mod.F90:98:0: warning: extra tokens at end of #include directive [enabled by default]
 #include <mpif.h>         ! mpi library include file
 ^
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_sys_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_file_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_const_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/mct_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/shr/seq_comm_mct.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_timer_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_string_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_nl_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/shr/shr_megan_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
mpif90  -c -I.  -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik//gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64//include -I/usr/lib64/openmpi//include -I/home/dominik//gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.share -I/home/dominik/cesm1_2_2/models/drv/shr -I/home/dominik/cesm1_2_2/models/dead_share -I/home/dominik/cesm1_2_2/models/csm_share/shr -I/home/dominik/cesm1_2_2/models/utils/esmf_wrf_timemgr -I/home/dominik//lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/csm_share/shr/shr_test_infnan_mod.F90
Warning: Nonexistent include directory "/usr/lib64//include"
Warning: Nonexistent include directory "/usr/lib64/openmpi//include"
/home/dominik/cesm1_2_2/models/csm_share/shr/shr_test_infnan_mod.F90:53.43:

    integer(Single), parameter :: sNegInf = Z"FF800000"
                                           1
Error: Arithmetic overflow converting INTEGER(16) to INTEGER(4) at (1). This check can be disabled with the option -fno-range-check
/home/dominik/cesm1_2_2/models/csm_share/shr/shr_test_infnan_mod.F90:58.43:

    integer(Double), parameter :: dNegInf = Z"FFF0000000000000"
                                           1
Error: Arithmetic overflow converting INTEGER(16) to INTEGER(8) at (1). This check can be disabled with the option -fno-range-check
/home/dominik/cesm1_2_2/models/csm_share/shr/shr_test_infnan_mod.F90:461.33:

    res = ieor(transfer(d,dNegInf), dNegInf) == 0
                                 1
Error: Symbol 'dneginf' at (1) has no IMPLICIT type
/home/dominik/cesm1_2_2/models/csm_share/shr/shr_test_infnan_mod.F90:454.33:

    res = ieor(transfer(x,sNegInf), sNegInf) == 0
                                 1
Error: Symbol 'sneginf' at (1) has no IMPLICIT type
gmake: *** [shr_test_infnan_mod.o] Error 1
gmake  complib -j 1 MODEL=csm_share COMPLIB=libcsm_share.a USER_CPPDEFS="  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DNUM_COMP_INST_ROF=1" -f /home/dominik/cesm1_2_2/scripts/test1/Tools/Makefile  returned non-zero exit status 2

santos

The way that we specified NaN bit patterns in that version of the model caused some internal checks to fail in gfortran. If you add "-fno-range-check" to your FFLAGS, either in config_compilers.xml or the case directory Macros file, it should work around this.

Sean Patrick Santos

CESM Software Engineering Group

spamiad@...

Thank you, I have a litle progress. Currently I am stuck with folowing errors in the cesm_bldlog

 

Thu 22 Jan 19:28:15 GMT 2015 /home/dominik/CESM_run/data/cesm.bldlog.150122-192729
-------------------------------------------------------------------------
 Building a single executable version of CESM
-------------------------------------------------------------------------
cat: Srcfiles: No such file or directory
/home/dominik/cesm1_2_2/scripts/test1/Tools/mkSrcfiles
cp -f /home/dominik/CESM_run/data/cesm/obj/Filepath /home/dominik/CESM_run/data/cesm/obj/Deppath
/home/dominik/cesm1_2_2/scripts/test1/Tools/mkDepends  Deppath Srcfiles > /home/dominik/CESM_run/data/cesm/obj/Depends
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_diag_mct.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_mctext_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_map_esmf.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_map_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_domain_mct.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/mrg_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_hist_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_flux_mct.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_frac_mct.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/seq_rest_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90
Warning: Nonexistent include directory "/usr/lib64/include"
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:208.52:

   type (ESMF_Clock), target, SAVE       :: EClock_a
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:207.52:

   type (ESMF_Clock), target, SAVE       :: EClock_d      ! driver clock
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:212.52:

   type (ESMF_Clock), target, SAVE       :: EClock_g
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:211.52:

   type (ESMF_Clock), target, SAVE       :: EClock_i
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:209.52:

   type (ESMF_Clock), target, SAVE       :: EClock_l
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:210.52:

   type (ESMF_Clock), target, SAVE       :: EClock_o
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:213.52:

   type (ESMF_Clock), target, SAVE       :: EClock_r
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:214.52:

   type (ESMF_Clock), target, SAVE       :: EClock_w
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:160.51:

   type(seq_map), SAVE :: mapper_Ca2x(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:172.51:

   type(seq_map), SAVE :: mapper_Cg2x(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:168.51:

   type(seq_map), SAVE :: mapper_Ci2x(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:162.51:

   type(seq_map), SAVE :: mapper_Cl2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:170.51:

   type(seq_map), SAVE :: mapper_Co2x(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:166.51:

   type(seq_map), SAVE :: mapper_Cr2x(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:164.51:

   type(seq_map), SAVE :: mapper_Cs2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:174.51:

   type(seq_map), SAVE :: mapper_Cw2x(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:161.51:

   type(seq_map), SAVE :: mapper_Cx2a(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:173.51:

   type(seq_map), SAVE :: mapper_Cx2g(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:169.51:

   type(seq_map), SAVE :: mapper_Cx2i(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:163.51:

   type(seq_map), SAVE :: mapper_Cx2l(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:171.51:

   type(seq_map), SAVE :: mapper_Cx2o(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:167.51:

   type(seq_map), SAVE :: mapper_Cx2r(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:165.51:

   type(seq_map), SAVE :: mapper_Cx2s(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:175.51:

   type(seq_map), SAVE :: mapper_Cx2w(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:183.37:

   type(seq_map), SAVE :: mapper_Fa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:179.37:

   type(seq_map), SAVE :: mapper_Fa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:188.37:

   type(seq_map), SAVE :: mapper_Fi2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:185.37:

   type(seq_map), SAVE :: mapper_Fl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:186.37:

   type(seq_map), SAVE :: mapper_Fl2r
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:181.37:

   type(seq_map), SAVE :: mapper_Fo2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:191.37:

   type(seq_map), SAVE :: mapper_Fr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:189.37:

   type(seq_map), SAVE :: mapper_Fr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:190.37:

   type(seq_map), SAVE :: mapper_Rr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:182.37:

   type(seq_map), SAVE :: mapper_Sa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:177.37:

   type(seq_map), SAVE :: mapper_Sa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:197.37:

   type(seq_map), SAVE :: mapper_Sa2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:195.38:

   type(seq_map), SAVE :: mapper_SFg2s
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:193.38:

   type(seq_map), SAVE :: mapper_SFi2o
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:194.38:

   type(seq_map), SAVE :: mapper_SFo2i
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:196.38:

   type(seq_map), SAVE :: mapper_SFs2g
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:187.37:

   type(seq_map), SAVE :: mapper_Si2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:199.37:

   type(seq_map), SAVE :: mapper_Si2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:184.37:

   type(seq_map), SAVE :: mapper_Sl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:180.37:

   type(seq_map), SAVE :: mapper_So2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:198.37:

   type(seq_map), SAVE :: mapper_So2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:192.37:

   type(seq_map), SAVE :: mapper_Sr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:200.37:

   type(seq_map), SAVE :: mapper_Sw2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:178.37:

   type(seq_map), SAVE :: mapper_Va2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/home/dominik/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:206.49:

   type (seq_timemgr_type), SAVE :: seq_SyncClock ! array of all clocks & alarm
                                                 1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
mpif90  -c -I.  -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/include -I/home/dominik/CESM_run/data/atm/obj -I/home/dominik/CESM_run/data/lnd/obj -I/home/dominik/CESM_run/data/ice/obj -I/home/dominik/CESM_run/data/ocn/obj -I/home/dominik/CESM_run/data/glc/obj -I/home/dominik/CESM_run/data/rof/obj -I/home/dominik/CESM_run/data/wav/obj -I/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr -I. -I/home/dominik/cesm1_2_2/scripts/test1/SourceMods/src.drv -I/home/dominik/cesm1_2_2/models/drv/driver -I/home/dominik/CESM_run/data/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -ffree-form   /home/dominik/cesm1_2_2/models/drv/driver/ccsm_driver.F90
Warning: Nonexistent include directory "/usr/lib64/include"
mpif90  -o /home/dominik/CESM_run/data/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/home/dominik/CESM_run/data/lib/ -latm  -L/home/dominik/CESM_run/data/lib/ -lice  -L/home/dominik/CESM_run/data/lib/ -llnd  -L/home/dominik/CESM_run/data/lib/ -locn  -L/home/dominik/CESM_run/data/lib/ -lrof  -L/home/dominik/CESM_run/data/lib/ -lglc  -L/home/dominik/CESM_run/data/lib/ -lwav -L/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/usr/lib64/lib -lnetcdf  
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `__shr_mct_mod_MOD_shr_mct_smatreaddnc':
shr_mct_mod.F90:(.text+0x11e1): undefined reference to `nf_open_'
shr_mct_mod.F90:(.text+0x129b): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x1300): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x1329): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x1354): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x137d): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x13a8): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x13d1): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x1432): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x1456): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x1481): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x14aa): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x14d5): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x14fe): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x1529): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x1552): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x172c): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x17a6): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x17f7): undefined reference to `nf_get_var_double_'
shr_mct_mod.F90:(.text+0x189e): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x1995): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x1a0f): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x1a60): undefined reference to `nf_get_var_double_'
shr_mct_mod.F90:(.text+0x1b07): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x2568): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x259b): undefined reference to `nf_get_vara_double_'
shr_mct_mod.F90:(.text+0x2624): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x266c): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x269f): undefined reference to `nf_get_vara_int_'
shr_mct_mod.F90:(.text+0x2728): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x2770): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x27a3): undefined reference to `nf_get_vara_int_'
shr_mct_mod.F90:(.text+0x282c): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x3294): undefined reference to `nf_close_'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `__shr_mct_mod_MOD_shr_mct_smatreadnc':
shr_mct_mod.F90:(.text+0x489e): undefined reference to `nf_open_'
shr_mct_mod.F90:(.text+0x4914): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x4972): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x498f): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x49b1): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x49ce): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x49f0): undefined reference to `nf_inq_dimid_'
shr_mct_mod.F90:(.text+0x4a0d): undefined reference to `nf_inq_dimlen_'
shr_mct_mod.F90:(.text+0x4cb8): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x4cd3): undefined reference to `nf_get_var_double_'
shr_mct_mod.F90:(.text+0x4d56): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x4e95): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x4eb0): undefined reference to `nf_get_var_int_'
shr_mct_mod.F90:(.text+0x4f33): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x4fea): undefined reference to `nf_inq_varid_'
shr_mct_mod.F90:(.text+0x5005): undefined reference to `nf_get_var_int_'
shr_mct_mod.F90:(.text+0x5088): undefined reference to `nf_strerror_'
shr_mct_mod.F90:(.text+0x512e): undefined reference to `nf_close_'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_scam_mod.o): In function `__shr_scam_mod_MOD_shr_scam_getcloselatlonnc':
shr_scam_mod.F90:(.text+0x17d9): undefined reference to `__netcdf_MOD_nf90_inquire'
shr_scam_mod.F90:(.text+0x19dc): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_scam_mod.F90:(.text+0x1bfb): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
shr_scam_mod.F90:(.text+0x1dac): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
shr_scam_mod.F90:(.text+0x20cd): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
shr_scam_mod.F90:(.text+0x2325): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_scam_mod.o): In function `__shr_scam_mod_MOD_shr_scam_checksurface':
shr_scam_mod.F90:(.text+0x2c75): undefined reference to `__netcdf_MOD_nf90_open'
shr_scam_mod.F90:(.text+0x2e4f): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_scam_mod.F90:(.text+0x3068): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_stream_mod.o): In function `__shr_stream_mod_MOD_shr_stream_readtcoord':
shr_stream_mod.F90:(.text+0x6355): undefined reference to `__netcdf_MOD_nf90_open'
shr_stream_mod.F90:(.text+0x643f): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_stream_mod.F90:(.text+0x64e5): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_stream_mod.F90:(.text+0x6689): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_stream_mod.F90:(.text+0x66d6): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
shr_stream_mod.F90:(.text+0x69d4): undefined reference to `__netcdf_MOD_nf90_get_att_text'
shr_stream_mod.F90:(.text+0x6a1e): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
shr_stream_mod.F90:(.text+0x6a50): undefined reference to `__netcdf_MOD_nf90_get_att_text'
shr_stream_mod.F90:(.text+0x6d93): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
shr_stream_mod.F90:(.text+0x6db8): undefined reference to `__netcdf_MOD_nf90_close'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_stream_mod.o): In function `__shr_stream_mod_MOD_shr_stream_getcalendar':
shr_stream_mod.F90:(.text+0x7f9b): undefined reference to `__netcdf_MOD_nf90_open'
shr_stream_mod.F90:(.text+0x8082): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_stream_mod.F90:(.text+0x80c9): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
shr_stream_mod.F90:(.text+0x80f8): undefined reference to `__netcdf_MOD_nf90_get_att_text'
shr_stream_mod.F90:(.text+0x82db): undefined reference to `__netcdf_MOD_nf90_close'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_handleerr':
shr_ncread_mod.F90:(.text+0x1f3): undefined reference to `__netcdf_MOD_nf90_strerror'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_close':
shr_ncread_mod.F90:(.text+0x2e4): undefined reference to `__netcdf_MOD_nf90_close'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_open':
shr_ncread_mod.F90:(.text+0x5c2): undefined reference to `__netcdf_MOD_nf90_open'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_field4dg':
shr_ncread_mod.F90:(.text+0x894): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_ncread_mod.F90:(.text+0x9d8): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x124b): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x1376): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
shr_ncread_mod.F90:(.text+0x2a8b): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
shr_ncread_mod.F90:(.text+0x2adb): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_dimsizename':
shr_ncread_mod.F90:(.text+0x5ec5): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
shr_ncread_mod.F90:(.text+0x5efa): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimsizes':
shr_ncread_mod.F90:(.text+0x6093): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_ncread_mod.F90:(.text+0x6130): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x62d3): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x635e): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimsizeid':
shr_ncread_mod.F90:(.text+0x64b8): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_ncread_mod.F90:(.text+0x6555): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x66ec): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
shr_ncread_mod.F90:(.text+0x6734): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimnum':
shr_ncread_mod.F90:(.text+0x6951): undefined reference to `__netcdf_MOD_nf90_inq_varid'
shr_ncread_mod.F90:(.text+0x69ec): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_varexists':
shr_ncread_mod.F90:(.text+0x6b76): undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_copy_att':
nf_mod.F90:(.text+0x41): undefined reference to `__netcdf_MOD_nf90_copy_att'
nf_mod.F90:(.text+0x54): undefined reference to `__netcdf_MOD_nf90_copy_att'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_def_var_md':
nf_mod.F90:(.text+0x362): undefined reference to `__netcdf_MOD_nf90_def_var_scalar'
nf_mod.F90:(.text+0x43a): undefined reference to `__netcdf_MOD_nf90_def_var_manydims'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_def_dim':
nf_mod.F90:(.text+0x8cc): undefined reference to `__netcdf_MOD_nf90_def_dim'
nf_mod.F90:(.text+0x8fd): undefined reference to `__netcdf_MOD_nf90_def_dim'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_redef':
nf_mod.F90:(.text+0xaf7): undefined reference to `__netcdf_MOD_nf90_redef'
nf_mod.F90:(.text+0xb0c): undefined reference to `__netcdf_MOD_nf90_redef'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_enddef':
nf_mod.F90:(.text+0xc16): undefined reference to `__netcdf_MOD_nf90_enddef'
nf_mod.F90:(.text+0xc3a): undefined reference to `__netcdf_MOD_nf90_enddef'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_inq_dimlen':
nf_mod.F90:(.text+0xdff): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
nf_mod.F90:(.text+0xe28): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_inq_dimname':
nf_mod.F90:(.text+0x1072): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
nf_mod.F90:(.text+0x10a6): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_inq_dimid':
nf_mod.F90:(.text+0x133a): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
nf_mod.F90:(.text+0x1367): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_varnatts_vid':
nf_mod.F90:(.text+0x1751): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
nf_mod.F90:(.text+0x17e3): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_vardimid_vid':
nf_mod.F90:(.text+0x1b29): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
nf_mod.F90:(.text+0x1c08): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_vartype_vid':
nf_mod.F90:(.text+0x1fe8): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o):nf_mod.F90:(.text+0x207c): more undefined references to `__netcdf_MOD_nf90_inquire_variable' follow
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_varid_vid':
nf_mod.F90:(.text+0x2bb9): undefined reference to `__netcdf_MOD_nf90_inq_varid'
nf_mod.F90:(.text+0x2be3): undefined reference to `__netcdf_MOD_nf90_inq_varid'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_attname_vid':
nf_mod.F90:(.text+0x2e1f): undefined reference to `__netcdf_MOD_nf90_inq_attname'
nf_mod.F90:(.text+0x2e4f): undefined reference to `__netcdf_MOD_nf90_inq_attname'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_attlen_vid':
nf_mod.F90:(.text+0x320c): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
nf_mod.F90:(.text+0x324c): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_inq_att_vid':
nf_mod.F90:(.text+0x34ec): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
nf_mod.F90:(.text+0x352c): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(nf_mod.F90.o): In function `__nf_mod_MOD_pio_inquire':
nf_mod.F90:(.text+0x37e3): undefined reference to `__netcdf_MOD_nf90_inquire'
nf_mod.F90:(.text+0x3818): undefined reference to `__netcdf_MOD_nf90_inquire'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pio_utils.F90.o): In function `__pio_utils_MOD_check_netcdf':
pio_utils.F90:(.text+0x226): undefined reference to `__netcdf_MOD_nf90_strerror'
pio_utils.F90:(.text+0x2b6): undefined reference to `__netcdf_MOD_nf90_strerror'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_1d_double':
pionfatt_mod.F90:(.text+0x24e): undefined reference to `__netcdf_MOD_nf90_get_att_eightbytereal'
pionfatt_mod.F90:(.text+0x37b): undefined reference to `__netcdf_MOD_nf90_get_att_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_1d_int':
pionfatt_mod.F90:(.text+0x6ee): undefined reference to `__netcdf_MOD_nf90_get_att_fourbyteint'
pionfatt_mod.F90:(.text+0x81b): undefined reference to `__netcdf_MOD_nf90_get_att_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_1d_real':
pionfatt_mod.F90:(.text+0xb8e): undefined reference to `__netcdf_MOD_nf90_get_att_fourbytereal'
pionfatt_mod.F90:(.text+0xcbb): undefined reference to `__netcdf_MOD_nf90_get_att_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_int':
pionfatt_mod.F90:(.text+0xf85): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbyteint'
pionfatt_mod.F90:(.text+0xff8): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_double':
pionfatt_mod.F90:(.text+0x1246): undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'
pionfatt_mod.F90:(.text+0x12b9): undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_real':
pionfatt_mod.F90:(.text+0x1507): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbytereal'
pionfatt_mod.F90:(.text+0x157a): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_get_att_text':
pionfatt_mod.F90:(.text+0x180d): undefined reference to `__netcdf_MOD_nf90_get_att_text'
pionfatt_mod.F90:(.text+0x1889): undefined reference to `__netcdf_MOD_nf90_get_att_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_1d_int':
pionfatt_mod.F90:(.text+0x1e84): undefined reference to `__netcdf_MOD_nf90_put_att_fourbyteint'
pionfatt_mod.F90:(.text+0x1eef): undefined reference to `__netcdf_MOD_nf90_put_att_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_1d_double':
pionfatt_mod.F90:(.text+0x23a0): undefined reference to `__netcdf_MOD_nf90_put_att_eightbytereal'
pionfatt_mod.F90:(.text+0x240b): undefined reference to `__netcdf_MOD_nf90_put_att_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_1d_real':
pionfatt_mod.F90:(.text+0x28bd): undefined reference to `__netcdf_MOD_nf90_put_att_fourbytereal'
pionfatt_mod.F90:(.text+0x2928): undefined reference to `__netcdf_MOD_nf90_put_att_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_int':
pionfatt_mod.F90:(.text+0x2c51): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
pionfatt_mod.F90:(.text+0x2c6e): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_double':
pionfatt_mod.F90:(.text+0x2f4a): undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
pionfatt_mod.F90:(.text+0x2f67): undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_real':
pionfatt_mod.F90:(.text+0x3241): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
pionfatt_mod.F90:(.text+0x325e): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfatt_mod.F90.o): In function `__pionfatt_mod_MOD_put_att_text':
pionfatt_mod.F90:(.text+0x3579): undefined reference to `__netcdf_MOD_nf90_put_att_text'
pionfatt_mod.F90:(.text+0x359b): undefined reference to `__netcdf_MOD_nf90_put_att_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_5d_double':
pionfput_mod.F90:(.text+0xb3e): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_4d_double':
pionfput_mod.F90:(.text+0x1923): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_3d_double':
pionfput_mod.F90:(.text+0x2600): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_2d_double':
pionfput_mod.F90:(.text+0x31ad): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_1d_double':
pionfput_mod.F90:(.text+0x3be6): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_5d_real':
pionfput_mod.F90:(.text+0x4979): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_4d_real':
pionfput_mod.F90:(.text+0x575e): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_3d_real':
pionfput_mod.F90:(.text+0x643b): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_2d_real':
pionfput_mod.F90:(.text+0x6fe8): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_1d_real':
pionfput_mod.F90:(.text+0x7a21): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_5d_int':
pionfput_mod.F90:(.text+0x87b4): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_4d_int':
pionfput_mod.F90:(.text+0x9599): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_3d_int':
pionfput_mod.F90:(.text+0xa276): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_2d_int':
pionfput_mod.F90:(.text+0xae23): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_1d_int':
pionfput_mod.F90:(.text+0xb85c): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_5d_text':
pionfput_mod.F90:(.text+0xc941): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_4d_text':
pionfput_mod.F90:(.text+0xdb01): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_3d_text':
pionfput_mod.F90:(.text+0xeb98): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_2d_text':
pionfput_mod.F90:(.text+0xfaea): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_vara_1d_text':
pionfput_mod.F90:(.text+0x108c6): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_0d_double':
pionfput_mod.F90:(.text+0x10d0b): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_0d_real':
pionfput_mod.F90:(.text+0x10f80): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_0d_int':
pionfput_mod.F90:(.text+0x111f5): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_5d_double':
pionfput_mod.F90:(.text+0x1196d): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_4d_double':
pionfput_mod.F90:(.text+0x12154): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_3d_double':
pionfput_mod.F90:(.text+0x12827): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_2d_double':
pionfput_mod.F90:(.text+0x12df5): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_1d_double':
pionfput_mod.F90:(.text+0x13266): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_5d_real':
pionfput_mod.F90:(.text+0x13a46): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_4d_real':
pionfput_mod.F90:(.text+0x1422d): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_3d_real':
pionfput_mod.F90:(.text+0x14900): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_2d_real':
pionfput_mod.F90:(.text+0x14ece): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_1d_real':
pionfput_mod.F90:(.text+0x1533f): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_5d_int':
pionfput_mod.F90:(.text+0x15b1f): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_4d_int':
pionfput_mod.F90:(.text+0x16306): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_3d_int':
pionfput_mod.F90:(.text+0x169d9): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_2d_int':
pionfput_mod.F90:(.text+0x16fa7): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_1d_int':
pionfput_mod.F90:(.text+0x17418): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_5d_text':
pionfput_mod.F90:(.text+0x17c48): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_4d_text':
pionfput_mod.F90:(.text+0x1847a): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_3d_text':
pionfput_mod.F90:(.text+0x18bb8): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_2d_text':
pionfput_mod.F90:(.text+0x191ec): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_1d_text':
pionfput_mod.F90:(.text+0x196b6): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var_0d_text':
pionfput_mod.F90:(.text+0x199fc): undefined reference to `nf_put_vars_text_'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var1_double':
pionfput_mod.F90:(.text+0x19f0f): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var1_real':
pionfput_mod.F90:(.text+0x1a47c): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var1_int':
pionfput_mod.F90:(.text+0x1a9e9): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfput_mod.F90.o): In function `__pionfput_mod_MOD_put_var1_text':
pionfput_mod.F90:(.text+0x1b07e): undefined reference to `__netcdf_MOD_nf90_put_var_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_5d_int':
pionfget_mod.F90:(.text+0x4af): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'
pionfget_mod.F90:(.text+0x5c1): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_4d_int':
pionfget_mod.F90:(.text+0xe18): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'
pionfget_mod.F90:(.text+0xf04): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_3d_int':
pionfget_mod.F90:(.text+0x163d): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'
pionfget_mod.F90:(.text+0x1703): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_2d_int':
pionfget_mod.F90:(.text+0x1d14): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
pionfget_mod.F90:(.text+0x1db4): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_1d_int':
pionfget_mod.F90:(.text+0x2264): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
pionfget_mod.F90:(.text+0x22df): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_0d_int':
pionfget_mod.F90:(.text+0x266e): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
pionfget_mod.F90:(.text+0x268e): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_5d_double':
pionfget_mod.F90:(.text+0x2c42): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'
pionfget_mod.F90:(.text+0x2d54): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_4d_double':
pionfget_mod.F90:(.text+0x35ab): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
pionfget_mod.F90:(.text+0x3697): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_3d_double':
pionfget_mod.F90:(.text+0x3dd0): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
pionfget_mod.F90:(.text+0x3e96): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_2d_double':
pionfget_mod.F90:(.text+0x44a7): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
pionfget_mod.F90:(.text+0x4547): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_1d_double':
pionfget_mod.F90:(.text+0x49f7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
pionfget_mod.F90:(.text+0x4a72): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_0d_double':
pionfget_mod.F90:(.text+0x4e01): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'
pionfget_mod.F90:(.text+0x4e21): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_5d_real':
pionfget_mod.F90:(.text+0x53d5): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'
pionfget_mod.F90:(.text+0x54e7): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_4d_real':
pionfget_mod.F90:(.text+0x5d3e): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'
pionfget_mod.F90:(.text+0x5e2a): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_3d_real':
pionfget_mod.F90:(.text+0x6563): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'
pionfget_mod.F90:(.text+0x6629): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_2d_real':
pionfget_mod.F90:(.text+0x6c3a): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'
pionfget_mod.F90:(.text+0x6cda): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_1d_real':
pionfget_mod.F90:(.text+0x718a): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
pionfget_mod.F90:(.text+0x7205): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_0d_real':
pionfget_mod.F90:(.text+0x7594): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'
pionfget_mod.F90:(.text+0x75b4): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_5d_text':
pionfget_mod.F90:(.text+0x7e00): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'
pionfget_mod.F90:(.text+0x7f41): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_4d_text':
pionfget_mod.F90:(.text+0x8a21): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'
pionfget_mod.F90:(.text+0x8b39): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_3d_text':
pionfget_mod.F90:(.text+0x9470): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'
pionfget_mod.F90:(.text+0x9559): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_2d_text':
pionfget_mod.F90:(.text+0x9cda): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'
pionfget_mod.F90:(.text+0x9d97): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_1d_text':
pionfget_mod.F90:(.text+0xa342): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
pionfget_mod.F90:(.text+0xa3d6): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var_0d_text':
pionfget_mod.F90:(.text+0xa7ed): undefined reference to `__netcdf_MOD_nf90_get_var_text'
pionfget_mod.F90:(.text+0xa829): undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_5d_int':
pionfget_mod.F90:(.text+0xb0bd): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'
pionfget_mod.F90:(.text+0xb286): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_4d_int':
pionfget_mod.F90:(.text+0xbef2): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'
pionfget_mod.F90:(.text+0xc092): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_3d_int':
pionfget_mod.F90:(.text+0xcbe5): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'
pionfget_mod.F90:(.text+0xcd59): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_2d_int':
pionfget_mod.F90:(.text+0xd779): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
pionfget_mod.F90:(.text+0xd8c1): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_1d_int':
pionfget_mod.F90:(.text+0xe1bc): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
pionfget_mod.F90:(.text+0xe2db): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_5d_double':
pionfget_mod.F90:(.text+0xeda7): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'
pionfget_mod.F90:(.text+0xef70): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_4d_double':
pionfget_mod.F90:(.text+0xfbdc): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
pionfget_mod.F90:(.text+0xfd7c): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_3d_double':
pionfget_mod.F90:(.text+0x108cf): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
pionfget_mod.F90:(.text+0x10a43): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_2d_double':
pionfget_mod.F90:(.text+0x11463): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
pionfget_mod.F90:(.text+0x115ab): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_1d_double':
pionfget_mod.F90:(.text+0x11ea6): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
pionfget_mod.F90:(.text+0x11fc5): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_5d_real':
pionfget_mod.F90:(.text+0x12a91): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'
pionfget_mod.F90:(.text+0x12c5a): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_4d_real':
pionfget_mod.F90:(.text+0x138c6): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'
pionfget_mod.F90:(.text+0x13a66): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_3d_real':
pionfget_mod.F90:(.text+0x145b9): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'
pionfget_mod.F90:(.text+0x1472d): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_2d_real':
pionfget_mod.F90:(.text+0x1514d): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'
pionfget_mod.F90:(.text+0x15295): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_1d_real':
pionfget_mod.F90:(.text+0x15b90): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
pionfget_mod.F90:(.text+0x15caf): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_5d_text':
pionfget_mod.F90:(.text+0x167cf): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'
pionfget_mod.F90:(.text+0x169ad): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_4d_text':
pionfget_mod.F90:(.text+0x17696): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'
pionfget_mod.F90:(.text+0x17845): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_3d_text':
pionfget_mod.F90:(.text+0x18408): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'
pionfget_mod.F90:(.text+0x1858b): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_2d_text':
pionfget_mod.F90:(.text+0x1901c): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'
pionfget_mod.F90:(.text+0x19173): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_vara_1d_text':
pionfget_mod.F90:(.text+0x19adc): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
pionfget_mod.F90:(.text+0x19c0a): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var1_int':
pionfget_mod.F90:(.text+0x1a2e0): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
pionfget_mod.F90:(.text+0x1a34e): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var1_double':
pionfget_mod.F90:(.text+0x1a898): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'
pionfget_mod.F90:(.text+0x1a906): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var1_real':
pionfget_mod.F90:(.text+0x1ae50): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'
pionfget_mod.F90:(.text+0x1aebe): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfget_mod.F90.o): In function `__pionfget_mod_MOD_get_var1_text':
pionfget_mod.F90:(.text+0x1b476): undefined reference to `__netcdf_MOD_nf90_get_var_text'
pionfget_mod.F90:(.text+0x1b4fc): undefined reference to `__netcdf_MOD_nf90_get_var_text'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(ionf_mod.F90.o): In function `__ionf_mod_MOD_sync_nf':
ionf_mod.F90:(.text+0xc7): undefined reference to `__netcdf_MOD_nf90_sync'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(ionf_mod.F90.o): In function `__ionf_mod_MOD_close_nf':
ionf_mod.F90:(.text+0x1e6): undefined reference to `__netcdf_MOD_nf90_sync'
ionf_mod.F90:(.text+0x28b): undefined reference to `__netcdf_MOD_nf90_close'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(ionf_mod.F90.o): In function `__ionf_mod_MOD_open_nf':
ionf_mod.F90:(.text+0x411): undefined reference to `__netcdf_MOD_nf90_open'
ionf_mod.F90:(.text+0x4d4): undefined reference to `__netcdf_MOD_nf90_set_fill'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(ionf_mod.F90.o): In function `__ionf_mod_MOD_create_nf':
ionf_mod.F90:(.text+0x614): undefined reference to `__netcdf_MOD_nf90_create'
ionf_mod.F90:(.text+0x6dd): undefined reference to `__netcdf_MOD_nf90_set_fill'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfread_mod.F90.o): In function `__pionfread_mod_MOD_read_nfdarray_int':
pionfread_mod.F90:(.text+0x298): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
pionfread_mod.F90:(.text+0xbcf): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
pionfread_mod.F90:(.text+0x104c): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfread_mod.F90.o): In function `__pionfread_mod_MOD_read_nfdarray_double':
pionfread_mod.F90:(.text+0x13c8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
pionfread_mod.F90:(.text+0x1cff): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
pionfread_mod.F90:(.text+0x217c): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfread_mod.F90.o): In function `__pionfread_mod_MOD_read_nfdarray_real':
pionfread_mod.F90:(.text+0x24f8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
pionfread_mod.F90:(.text+0x2e2f): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
pionfread_mod.F90:(.text+0x32ac): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfwrite_mod.F90.o): In function `__pionfwrite_mod_MOD_write_nfdarray_double':
pionfwrite_mod.F90:(.text+0x46c): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
pionfwrite_mod.F90:(.text+0x9f9): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
pionfwrite_mod.F90:(.text+0xfd5): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfwrite_mod.F90.o): In function `__pionfwrite_mod_MOD_write_nfdarray_int':
pionfwrite_mod.F90:(.text+0x169d): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
pionfwrite_mod.F90:(.text+0x1c2a): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
pionfwrite_mod.F90:(.text+0x2206): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
/home/dominik/CESM_run/data/gnu/openmpi/nodebug/nothreads/lib/libpio.a(pionfwrite_mod.F90.o): In function `__pionfwrite_mod_MOD_write_nfdarray_real':
pionfwrite_mod.F90:(.text+0x28d6): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
pionfwrite_mod.F90:(.text+0x2e63): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'
pionfwrite_mod.F90:(.text+0x343f): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'
/usr/lib64/openmpi/lib/libnetcdf.so: undefined reference to `H5Pset_dxpl_mpio'
/usr/lib64/openmpi/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpio'
/usr/lib64/openmpi/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix'
collect2: error: ld returned 1 exit status
gmake: *** [/home/dominik/CESM_run/data/cesm.exe] Error 1

jedwards

You need to link the netcdf fortran library libnetcdff.a as well as the c version.  

CESM Software Engineer

spamiad@...

Did I not do this by setting

SLIBS+=# -L$NETCDF_PATH/lib -lnetcdff -lnetcdf

NETCDF_PATH:= /usr/lib64/openmpi

 

... in the Macro file.

 

I also tried pointing the directories to the folder where the non openmpi ncdf libraries were installed.

jedwards

Should be

SLIBS+= -L$NETCDF_PATH/lib -lnetcdff -lnetcdf

 

(remove the #)

CESM Software Engineer

spamiad@...

Thanks!

spamiad@...

now I try to run a job order receiving

 

 ./test1.run
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /home/dominik/CESM_run/run
 infile is /home/dominik/cesm1_2_2/scripts/test1/Buildconf/cplconf/cesm_namelist
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/dominik/CESM_run/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Thu 22 Jan 22:51:43 GMT 2015 -- CSM EXECUTION BEGINS HERE
Thu 22 Jan 22:51:43 GMT 2015 -- CSM EXECUTION HAS FINISHED
ls: No match.

spamiad@...

I guess it was impossible to work since I did not have torque installed.


However, after installing it and succesfully testing a small sample script I still receive above error. ls: no match.


Within mkbatch.userdefined I did remove the extra # in front of all PBS commands and both tried mpiexec and mpirun.


spamiad@...

I set the LD_LIBRARY_PATH correctly and was able to run the -compset X test run.

Now I am trying to export my settings so I do not have to repeat the setup steps for each new case.

Following the manual I have configured the respective files. However, already trying to build mcp I receive below errors (from the config.log) It seems there is a /include directory within the compiler call which does not exist, from which setting could this come?

 

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by MCT configure 2.8, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /home/dominik/cesm1_2_2/models/utils/mct/configure CC=gcc  FC=gfortran  MPICC=mpicc   MPIFC=mpif90  FCFLAGS=-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check  -ffree-form  -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr CPPDEFS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  CFLAGS= -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr NETCDF_PATH=/usr/lib64/ LDFLAGS= LIBS=-L/usr/lib64/ -lnetcdf -lnetcdff  --srcdir /home/dominik/cesm1_2_2/models/utils/mct

## --------- ##
## Platform. ##
## --------- ##

hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.10.0-123.13.2.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Thu Dec 18 14:09:13 UTC 2014

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/bin
PATH: /usr/local/sbin
PATH: /usr/bin
PATH: /usr/sbin
PATH: /bin
PATH: /sbin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2358: checking for C compiler version
configure:2367: gcc  --version >&5
gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2378: $? = 0
configure:2367: gcc  -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC)
configure:2378: $? = 0
configure:2367: gcc  -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2367: gcc  -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:2378: $? = 4
configure:2398: checking whether the C compiler works
configure:2420: gcc   -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr   conftest.c -L/usr/lib64/ -lnetcdf -lnetcdff  >&5
gcc: error: /include: No such file or directory
configure:2424: $? = 1
configure:2462: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
|
| int
| main ()
| {
|
|   ;
|   return 0;
| }
configure:2467: error: in `/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/mct':
configure:2469: error: C compiler cannot create executables
See `config.log' for more details

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_env_AR_set=
ac_cv_env_AR_value=
ac_cv_env_BABELROOT_set=
ac_cv_env_BABELROOT_value=
ac_cv_env_BIT64_set=
ac_cv_env_BIT64_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value='gcc '
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_COMPILER_ROOT_set=
ac_cv_env_COMPILER_ROOT_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_DEBUG_set=set
ac_cv_env_DEBUG_value=FALSE
ac_cv_env_ENDIAN_set=
ac_cv_env_ENDIAN_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check  -ffree-form  -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
ac_cv_env_FC_set=set
ac_cv_env_FC_value='gfortran '
ac_cv_env_FORT_SIZE_set=
ac_cv_env_FORT_SIZE_value=
ac_cv_env_FPPFLAGS_set=
ac_cv_env_FPPFLAGS_value=
ac_cv_env_FPP_set=
ac_cv_env_FPP_value=
ac_cv_env_INCLUDEFLAG_set=
ac_cv_env_INCLUDEFLAG_value=
ac_cv_env_INCLUDEPATH_set=
ac_cv_env_INCLUDEPATH_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value='-L/usr/lib64/ -lnetcdf -lnetcdff '
ac_cv_env_MPIFC_set=set
ac_cv_env_MPIFC_value='mpif90 '
ac_cv_env_MPIHEADER_set=
ac_cv_env_MPIHEADER_value=
ac_cv_env_MPILIBS_set=set
ac_cv_env_MPILIBS_value=openmpi
ac_cv_env_OPT_set=
ac_cv_env_OPT_value=
ac_cv_env_PROGFCFLAGS_set=
ac_cv_env_PROGFCFLAGS_value=
ac_cv_env_RANLIB_set=
ac_cv_env_RANLIB_value=
ac_cv_env_REAL8_set=
ac_cv_env_REAL8_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=

## ----------------- ##
## Output variables. ##
## ----------------- ##

AR=''
BABELROOT=''
BIT64=''
CC='gcc '
CFLAGS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU  -I.. -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
COMPILER_ROOT=''
CPP=''
CPPDEFS=' -DLinux  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRGNU '
CPPFLAGS=''
CRULE=''
DEBUG='FALSE'
DEFS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENDIAN=''
EXEEXT=''
FC='gfortran '
FCFLAGS='-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check  -ffree-form  -I.  -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/usr/lib64/ /include -I/CESM_run/scratch/root/root/bld/gnu/openmpi/nodebug/nothreads/include -I/home/dominik/cesm1_2_2/models/csm_share/shr'
FCFLAGS_F90=''
FCFLAGS_F=''
FCLIBS=''
FC_DEFINE=''
FORT_SIZE=''
FPP=''
FPPFLAGS=''
GREP=''
INCLUDEFLAG=''
INCLUDEPATH=''
LDFLAGS=''
LIBOBJS=''
LIBS='-L/usr/lib64/ -lnetcdf -lnetcdff '
LTLIBOBJS=''
MPIFC='mpif90 '
MPIHEADER=''
MPILIBS='openmpi'
MPISERPATH=''
OBJEXT=''
OPT=''
PACKAGE_BUGREPORT=''
PACKAGE_NAME='MCT'
PACKAGE_STRING='MCT 2.8'
PACKAGE_TARNAME='mct'
PACKAGE_URL=''
PACKAGE_VERSION='2.8'
PATH_SEPARATOR=':'
PROGFCFLAGS=''
PYTHON=''
PYTHONOPTS=''
RANLIB=''
REAL8=''
SHELL='/bin/sh'
ac_ct_CC=''
ac_ct_FC=''
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "MCT"
#define PACKAGE_TARNAME "mct"
#define PACKAGE_VERSION "2.8"
#define PACKAGE_STRING "MCT 2.8"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""

configure: exit 77

jedwards

You have a space before the /include in this line:  


-I/usr/lib64/ /include

CESM Software Engineer

spamiad@...

yes, silly mistake.I have installed the model.

 

After creating a new case and trying to build it I however receive a new error: foreach: no match

The input data was downloaded in a previous case resulting in the identical error while building.

./create_newcase -case t1 -res f19_g16 -compset I -mach vbox
-------------------------------------------------------------------------------
For a list of potential issues in the current tag, please point your web browser to:
https://svn-ccsm-models.cgd.ucar.edu/cesm1/known_problems/
-------------------------------------------------------------------------------
 grid longname is f19_g16
Component set: longname (shortname) (alias)
  2000_DATM%QIA_CLM40%SP_SICE_SOCN_RTM_SGLC_SWAV (I_2000) (I)
Component set Description:
  DATM: CLM: RTM: SICE: SOCN: SGLC: SWAV: present day: clm4.0 physics: clm4.0 Satellite phenology: QIAN atm input data for 1972-2004:
Grid:
  a%1.9x2.5_l%1.9x2.5_oi%gx1v6_r%r05_m%gx1v6_g%null_w%null (1.9x2.5_gx1v6)
  ATM_GRID = 1.9x2.5  NX_ATM=144 NY_ATM=96
  LND_GRID = 1.9x2.5  NX_LND=144 NX_LND=96
  ICE_GRID = gx1v6  NX_ICE=320 NX_ICE=384
  OCN_GRID = gx1v6  NX_OCN=320 NX_OCN=384
  ROF_GRID = r05  NX_ROF=720 NX_ROF=360
  GLC_GRID = 1.9x2.5  NX_GLC=144 NX_GLC=96
  WAV_GRID = null  NX_WAV=0 NX_WAV=0
Grid Description:
  null is no grid: 1.9x2.5 is FV 2-deg grid: gx1v6 is Greenland pole v6 1-deg grid: r05 is 1/2 degree river routing grid:
Non-Default Options:
  ATM_NCPL: 48
  BUDGETS: FALSE
  CCSM_BGC: none
  CCSM_CCOST: -2
  CCSM_CO2_PPMV: 367.0
  CLM_CO2_TYPE: constant
  CLM_CONFIG_OPTS: -phys clm4_0
  CLM_NML_USE_CASE: 2000_control
  COMP_ATM: datm
  COMP_GLC: sglc
  COMP_ICE: sice
  COMP_LND: clm
  COMP_OCN: socn
  COMP_ROF: rtm
  COMP_WAV: swav
  CPL_ALBAV: false
  CPL_EPBAL: off
  DATM_CLMNCEP_YR_ALIGN: 1
  DATM_CLMNCEP_YR_END: 2004
  DATM_CLMNCEP_YR_START: 1972
  DATM_MODE: CLM_QIAN
  DATM_PRESAERO: clim_2000
  GET_REFCASE: TRUE
  OCN_NCPL: 1
  OCN_TIGHT_COUPLING: FALSE
  ROF_NCPL: 8
  RTM_BLDNML_OPTS: -simyr 2000
  RUN_REFCASE: I2000CN_f19_g16_c100503
  RUN_REFDATE: 0001-01-01
  RUN_TYPE: hybrid
  SCIENCE_SUPPORT: NO

The PE layout for this case match these options:
GRID =  a%1.9x2.5
CCSM_LCOMPSET =  XATM|DATM.+CLM
Creating /home/dominik/cesm1_2_2/scripts/t1
Created /home/dominik/cesm1_2_2/scripts/t1/env_case.xml
Created /home/dominik/cesm1_2_2/scripts/t1/env_mach_pes.xml
Created /home/dominik/cesm1_2_2/scripts/t1/env_build.xml
Created /home/dominik/cesm1_2_2/scripts/t1/env_run.xml
Locking file /home/dominik/cesm1_2_2/scripts/t1/env_case.xml
Successfully created the case for vbox

./cesm_setup
Creating Macros file for vbox
/home/dominik/cesm1_2_2/scripts/ccsm_utils/Machines/config_compilers.xml gnu vbox
Creating batch script t1.run
Locking file env_mach_pes.xml
Creating user_nl_xxx files for components and cpl
Running preview_namelist script
 infile is /home/dominik/cesm1_2_2/scripts/t1/Buildconf/cplconf/cesm_namelist
CLM configure done.
WARNING: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc is being used.
WARNING: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc is being used.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
rtm.buildnml.csh could not find restart file for branch or hybrid start
See ./CaseDoc for component namelists
If an old case build already exists, might want to run t1.clean_build before building

./t1.build
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /CESM_run/scratch/dominik/t1/run
 infile is /home/dominik/cesm1_2_2/scripts/t1/Buildconf/cplconf/cesm_namelist
CLM configure done.
WARNING: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc is being used.
WARNING: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc is being used.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
rtm.buildnml.csh could not find restart file for branch or hybrid start
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /media/sf_Desktop/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 
Any files with "status unknown" below were not found in the
expected location, and are not from the input data repository.
This is informational only; this script will not attempt to
find these files. If CESM can find (or does not need) these files
at run time, no error will result.
Input Data List Files Found:
/home/dominik/cesm1_2_2/scripts/t1/Buildconf/cpl.input_data_list
/home/dominik/cesm1_2_2/scripts/t1/Buildconf/datm.input_data_list
/home/dominik/cesm1_2_2/scripts/t1/Buildconf/clm.input_data_list
/home/dominik/cesm1_2_2/scripts/t1/Buildconf/rtm.input_data_list
File status unknown: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc
File status unknown: I2000CN_f19_g16_c100503.clm2.r.0001-01-01-00000.nc
 
 - Prestaging REFCASE (ccsm4_init/I2000CN_f19_g16_c100503/0001-01-01) to /CESM_run/scratch/dominik/t1/run
foreach: No match.

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