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CESM 1.2.0 termination EXIT CODE:139

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23lukia@...
CESM 1.2.0 termination EXIT CODE:139

I update netcdf version from 4.3.3.1 to 4.4.1.1, netcdf-fortran from 4.4.2 to 4.4.4, build step is success but when run the model, it crashes. I have no idea why the process is terminated. The error shows as follows:

 

(seq_comm_setcomm)  initialize ID (  1 GLOBAL          ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID (  2 CPL             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 17 ATM             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 18 CPLATM          ) join IDs =     2    17       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  3 ALLATMID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 10 CPLALLATMID     ) join IDs =     2     3       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 19 LND             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 20 CPLLND          ) join IDs =     2    19       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  4 ALLLNDID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 11 CPLALLLNDID     ) join IDs =     2     4       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 21 OCN             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 22 CPLOCN          ) join IDs =     2    21       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  5 ALLOCNID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 12 CPLALLOCNID     ) join IDs =     2     5       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 23 ICE             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 24 CPLICE          ) join IDs =     2    23       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  6 ALLICEID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 13 CPLALLICEID     ) join IDs =     2     6       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 25 GLC             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 26 CPLGLC          ) join IDs =     2    25       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  7 ALLGLCID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 14 CPLALLGLCID     ) join IDs =     2     7       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 27 ROF             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 28 CPLROF          ) join IDs =     2    27       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  8 ALLROFID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 15 CPLALLROFID     ) join IDs =     2     8       ( npes =     8) ( nthreads =  1)

(seq_comm_setcomm)  initialize ID ( 29 WAV             ) pelist   =     0     7     1 ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 30 CPLWAV          ) join IDs =     2    29       ( npes =     8) ( nthreads =  1)

(seq_comm_jcommarr) initialize ID (  9 ALLWAVID        ) join multiple comp IDs       ( npes =     8) ( nthreads =  1)

(seq_comm_joincomm) initialize ID ( 16 CPLALLWAVID     ) join IDs =     2     9       ( npes =     8) ( nthreads =  1)

(seq_comm_printcomms)     1     0     8     1  GLOBAL:

(seq_comm_printcomms)     2     0     8     1  CPL:

(seq_comm_printcomms)     3     0     8     1  ALLATMID:

(seq_comm_printcomms)     4     0     8     1  ALLLNDID:

(seq_comm_printcomms)     5     0     8     1  ALLOCNID:

(seq_comm_printcomms)     6     0     8     1  ALLICEID:

(seq_comm_printcomms)     7     0     8     1  ALLGLCID:

(seq_comm_printcomms)     8     0     8     1  ALLROFID:

(seq_comm_printcomms)     9     0     8     1  ALLWAVID:

(seq_comm_printcomms)    10     0     8     1  CPLALLATMID:

(seq_comm_printcomms)    11     0     8     1  CPLALLLNDID:

(seq_comm_printcomms)    12     0     8     1  CPLALLOCNID:

(seq_comm_printcomms)    13     0     8     1  CPLALLICEID:

(seq_comm_printcomms)    14     0     8     1  CPLALLGLCID:

(seq_comm_printcomms)    15     0     8     1  CPLALLROFID:

(seq_comm_printcomms)    16     0     8     1  CPLALLWAVID:

(seq_comm_printcomms)    17     0     8     1  ATM:

(seq_comm_printcomms)    18     0     8     1  CPLATM:

(seq_comm_printcomms)    19     0     8     1  LND:

(seq_comm_printcomms)    20     0     8     1  CPLLND:

(seq_comm_printcomms)    21     0     8     1  OCN:

(seq_comm_printcomms)    22     0     8     1  CPLOCN:

(seq_comm_printcomms)    23     0     8     1  ICE:

(seq_comm_printcomms)    24     0     8     1  CPLICE:

(seq_comm_printcomms)    25     0     8     1  GLC:

(seq_comm_printcomms)    26     0     8     1  CPLGLC:

(seq_comm_printcomms)    27     0     8     1  ROF:

(seq_comm_printcomms)    28     0     8     1  CPLROF:

(seq_comm_printcomms)    29     0     8     1  WAV:

(seq_comm_printcomms)    30     0     8     1  CPLWAV:

 (t_initf) Read in prof_inparm namelist from: drv_in

8 MB memory   alloc in MB is             8.00

8 MB memory dealloc in MB is             0.00

Memory block size conversion in bytes is          1022.00

seq_flds_mod: read seq_cplflds_inparm namelist from: drv_in

 drv_in

8 MB memory   alloc in MB is             8.00

8 MB memory dealloc in MB is             0.00

Memory block size conversion in bytes is          1022.00

8 MB memory   alloc in MB is             8.008 MB memory   alloc in MB is             8.00

seq_flds_mod: read seq_cplflds_userspec namelist from: drv_in

8 MB memory dealloc in MB is             0.00

Memory block size conversion in bytes is          1019.52

 

8 MB memory dealloc in MB is             0.00

8 MB memory   alloc in MB is             8.00Memory block size conversion in bytes is          1021.51

8 MB memory   alloc in MB is             8.00

8 MB memory dealloc in MB is             0.00

 

8 MB memory dealloc in MB is             0.00

Memory block size conversion in bytes is          1020.51

Memory block size conversion in bytes is          1022.00

8 MB memory   alloc in MB is             8.00

8 MB memory dealloc in MB is             0.00

Memory block size conversion in bytes is          1019.52

seq_flds_mod: seq_flds_a2x_states= 

Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Sa_dens:Sa_pslv:Sa_co2prog:Sa_co2diag

seq_flds_mod: seq_flds_a2x_fluxes= 

Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_swnet:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4

seq_flds_mod: seq_flds_x2a_states= 

Sf_lfrac:Sf_ifrac:Sf_ofrac:Sx_avsdr:Sx_anidr:Sx_avsdf:Sx_anidf:Sx_tref:Sx_qref:So_t:Sx_t:Sl_fv:Sl_ram1:Sl_snowh:Si_snowh:So_ssq:So_re:Sx_u10:So_ustar

seq_flds_mod: seq_flds_x2a_fluxes= 

Faxx_taux:Faxx_tauy:Faxx_lat:Faxx_sen:Faxx_lwup:Faxx_evap:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4

seq_flds_mod: seq_flds_l2x_states= 

Sl_avsdr:Sl_anidr:Sl_avsdf:Sl_anidf:Sl_tref:Sl_qref:Sl_t:Sl_fv:Sl_ram1:Sl_snowh:Sl_u10

seq_flds_mod: seq_flds_l2x_fluxes= 

Fall_swnet:Fall_taux:Fall_tauy:Fall_lat:Fall_sen:Fall_lwup:Fall_evap:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4:Flrl_rofliq:Flrl_rofice

seq_flds_mod: seq_flds_x2l_states= 

Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Slrr_volr:Sa_co2prog:Sa_co2diag

seq_flds_mod: seq_flds_x2l_fluxes= 

Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Flrr_flood

seq_flds_mod: seq_flds_i2x_states= 

Si_avsdr:Si_anidr:Si_avsdf:Si_anidf:Si_tref:Si_qref:Si_t:Si_snowh:Si_u10:Si_ifrac

seq_flds_mod: seq_flds_i2x_fluxes= 

Faii_swnet:Fioi_swpen:Faii_taux:Fioi_taux:Faii_tauy:Fioi_tauy:Faii_lat:Faii_sen:Faii_lwup:Faii_evap:Fioi_melth:Fioi_meltw:Fioi_salt

seq_flds_mod: seq_flds_x2i_states= 

Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Sa_dens:So_t:So_s:So_u:So_v:So_dhdx:So_dhdy

seq_flds_mod: seq_flds_x2i_fluxes= 

Faxa_rain:Faxa_snow:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Fioo_q

seq_flds_mod: seq_flds_o2x_states= 

So_t:So_s:So_u:So_v:So_dhdx:So_dhdy:So_bldepth

seq_flds_mod: seq_flds_o2x_fluxes= 

Fioo_q

seq_flds_mod: seq_flds_x2o_states= 

Sa_pslv:So_duu10n:Si_ifrac:Sw_lamult:Sw_ustokes:Sw_vstokes:Sw_hstokes

seq_flds_mod: seq_flds_x2o_fluxes= 

Faxa_rain:Faxa_snow:Faxa_prec:Faxa_lwdn:Foxx_swnet:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Foxx_taux:Foxx_tauy:Foxx_lat:Foxx_sen:Foxx_lwup:Foxx_evap:Fioi_melth:Fioi_meltw:Fioi_salt:Forr_roff:Forr_ioff

seq_flds_mod: seq_flds_s2x_states= 

 

seq_flds_mod: seq_flds_s2x_fluxes= 

 

seq_flds_mod: seq_flds_x2s_states= 

 

seq_flds_mod: seq_flds_x2s_fluxes= 

 

seq_flds_mod: seq_flds_g2x_states= 

 

seq_flds_mod: seq_flds_g2x_fluxes= 

 

seq_flds_mod: seq_flds_x2g_states= 

 

seq_flds_mod: seq_flds_x2g_fluxes= 

 

seq_flds_mod: seq_flds_xao_states= 

So_tref:So_qref:So_ssq:So_re:So_u10:So_duu10n:So_ustar

seq_flds_mod: seq_flds_xao_albedo= 

So_avsdr:So_anidr:So_avsdf:So_anidf

seq_flds_mod: seq_flds_r2x_states= 

Slrr_volr

seq_flds_mod: seq_flds_r2x_fluxes= 

Forr_roff:Forr_ioff:Flrr_flood

seq_flds_mod: seq_flds_x2r_states= 

 

seq_flds_mod: seq_flds_x2r_fluxes= 

Flrl_rofliq:Flrl_rofice

seq_flds_mod: seq_flds_w2x_states= 

Sw_lamult:Sw_ustokes:Sw_vstokes:Sw_hstokes

seq_flds_mod: seq_flds_w2x_fluxes= 

 

seq_flds_mod: seq_flds_x2w_states= 

Sa_u:Sa_v:Sa_tbot:Si_ifrac:So_t:So_u:So_v:So_bldepth

seq_flds_mod: seq_flds_x2w_fluxes= 

 

            8 pes participating in computation

 -----------------------------------

 TASK#  NAME

  0  node4

  1  node4

  2  node4

  3  node4

  4  node4

  5  node4

  6  node4

  7  node4

 

===================================================================================

=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES

=   PID 9237 RUNNING AT node4

=   EXIT CODE: 139

=   CLEANING UP REMAINING PROCESSES

=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

===================================================================================

YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)

This typically refers to a problem with your application.

Please see the FAQ page for debugging suggestions

 

Layna

 
jedwards

There is no error apparent in this log - check the component logs and the output from your batch system for the error.    Try compiling with DEBUG=TRUE and running again.

CESM Software Engineer

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