Welcome to the new DiscussCESM forum!
We are still working on the website migration, so you may experience downtime during this process.

Existing users, please reset your password before logging in here: https://xenforo.cgd.ucar.edu/cesm/index.php?lost-password/

The error of running ./case.submit

pjiang

pjiang
New Member
Hello,

when running ./case.submit, I encountered the following errors:
.
.
Model cpl missing file ice2wav_smapname = '/root/cesm/inputdata/cpl/gridmaps/gx1v7/map_gx1v7_TO_ww3a_splice_170214.nc'
Model cpl missing file wav2ocn_smapname = '/root/cesm/inputdata/cpl/gridmaps/ww3a/map_ww3a_TO_gx1v7_splice_170214.nc'
Using protocol wget with user anonymous and passwd user@example.edu
Could not connect to repo 'ftp://ftp.cgd.ucar.edu/cesm/inputdata'
This is most likely either a proxy, or network issue .
Trying to download file: '../inputdata_checksum.dat' to path '/root/cesm/scratch/mycase/run/inputdata_checksum.dat.raw' using NoneType protocol.
Traceback (most recent call last):
File "./case.submit", line 107, in <module>
_main_func(__doc__)
File "./case.submit", line 104, in _main_func
mail_user=mail_user, mail_type=mail_type, batch_args=batch_args)
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 157, in submit
custom_success_msg_functor=verbatim_success_msg)
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/utils.py", line 1683, in run_and_log_case_status
rv = func()
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 155, in <lambda>
batch_args=batch_args)
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 85, in _submit
case.check_case()
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 171, in check_case
self.check_all_input_data()
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/check_input_data.py", line 163, in check_all_input_data
_download_checksum_file(self.get_value("RUNDIR"))
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/check_input_data.py", line 54, in _download_checksum_file
success = server.getfile(rel_path, new_file)
AttributeError: 'NoneType' object has no attribute 'getfile'

when running ./check_input_data --download, I encountered the following errors:
.
Model cpl missing file ice2wav_smapname = '/root/cesm/inputdata/cpl/gridmaps/gx1v7/map_gx1v7_TO_ww3a_splice_170214.nc'
Model cpl missing file wav2ocn_smapname = '/root/cesm/inputdata/cpl/gridmaps/ww3a/map_ww3a_TO_gx1v7_splice_170214.nc'
Using protocol wget with user anonymous and passwd user@example.edu
Could not connect to repo 'ftp://ftp.cgd.ucar.edu/cesm/inputdata'
This is most likely either a proxy, or network issue .
Trying to download file: '../inputdata_checksum.dat' to path '/root/cesm/scratch/mycase/run/inputdata_checksum.dat.raw' using NoneType protocol.
Traceback (most recent call last):
File "./check_input_data", line 76, in <module>
_main_func(__doc__)
File "./check_input_data", line 71, in _main_func
chksum=chksum) else 1)
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/check_input_data.py", line 163, in check_all_input_data
_download_checksum_file(self.get_value("RUNDIR"))
File "/opt/CESM/CESM-release-cesm2.1.3/cime/scripts/Tools/../../scripts/lib/CIME/case/check_input_data.py", line 54, in _download_checksum_file
success = server.getfile(rel_path, new_file)
AttributeError: 'NoneType' object has no attribute 'getfile'

As executing server = CIME.Servers.WGET.wget_login(address, user, passwd), return None in check_input_data.py.

I can access https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/

How will I proceed? I would like to help. Thank you in advance.
 

fischer

CSEG and Liaisons
Staff member
Hi,

Can you do anonymous ftp to ftp.cgd.ucar.edu? I'm wondering if your sever is being block.
>ftp ftp.cgd.ucar.edu
Name: anonymous
Password: user@mail.edu

Chris
 

pjiang

pjiang
New Member
Hi,

Can you do anonymous ftp to ftp.cgd.ucar.edu? I'm wondering if your sever is being block.
>ftp ftp.cgd.ucar.edu
Name: anonymous
Password: user@mail.edu

Chris

Hi,

Can you do anonymous ftp to ftp.cgd.ucar.edu? I'm wondering if your sever is being block.
>ftp ftp.cgd.ucar.edu
Name: anonymous
Password: user@mail.edu

Chris
Thank you very much, It's OK now from ftp ftp.cgd.ucar.edu, but I need to modify config_inputdata.xml file.
 

fischer

CSEG and Liaisons
Staff member
I'm not sure what's going on. It looks like you're not having a problem access the servers. You shouldn't need to modify the config_inputdata.xml
file. Try either of these check_input_data commands.

./check_input_data --download --protocol svn
or
./check_input_data --download --protocol ftp

Chris
 

Riley

hanzy
New Member
i guess the problem comes from "inputdata" dir. it looks like that files couldn't find in the path you set at *.xml
 
I'm not sure what's going on. It looks like you're not having a problem access the servers. You shouldn't need to modify the config_inputdata.xml
file. Try either of these check_input_data commands.

./check_input_data --download --protocol svn
or
./check_input_data --download --protocol ftp

Chris
Hi Fischer,
I have the same problem and get following error. Did anybody resolve this issue? Thanks, VIshal

Model pop missing file init_ecosys_init_file = '/scratch-shared/vvdixit/inputdata/ocn/pop/gx1v6/ic/ecosys_jan_IC_omip_POP_gx1v7_c200323.nc'

Using protocol gftp with user and passwd

Trying to download file: '../inputdata_checksum.dat' to path '/scratch-shared/vvdixit/B1850.test/run/inputdata_checksum.dat.raw' using GridFTP protocol.

FAIL: GridFTP repo 'ftp://gridanon.cgd.ucar.edu:2811/cesm/inputdata/' does not have file '../inputdata_checksum.dat' error=error: globus_ftp_client: the server responded with an error

500 500-Command failed. : callback failed.

500-globus_xio: Unable to connect to 145.100.200.15:47624

500-globus_xio: System error in connect: Connection timed out

500-globus_xio: A system call failed: Connection timed out

500 End.
 
Top