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CESM2.1.1, PIO building Failed

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rack.hun.son@...
CESM2.1.1, PIO building Failed

Hello,


I have tried to setup CESM2.1.1 on our cluster machine and struggling for PIO build up issue. It is hard for me to know what is wrong from the below log message. I also copy config_machine.xml below the log. Could you advice me what I am missing or where I should correct?

 

 

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ERROR: /home/slhdesa/cesm/cime/src/build_scripts/buildlib.pio FAILED, cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127


[slhdesa@forecast1 b.day1.0.25]$ cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127

make /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/Makefile -C /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASEROOT=/home/slhdesa/cesm_exp/b.day1.0.25 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASETOOLS=/home/slhdesa/cesm_exp/b.day1.0.25/Tools PIO_VERSION=1 MPILIB=mpich SHAREDLIBROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio EXEROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld COMPILER=intel BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /home/slhdesa/cesm_exp/b.day1.0.25/Tools/Makefile

make: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkSrcfiles

cp -f Filepath Deppath

/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkDepends  Deppath Srcfiles > Depends

make: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

make: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1; \

 CC=mpicc   CXX=mpicxx  FC=mpif90  LDFLAGS="" cmake  -D CMAKE_Fortran_FLAGS:STRING="-qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99   -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99   -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/home/slhdesa/cesm/cime/src/CMake;/home/slhdesa/cesm/cime/src/externals/pio2/cmake"  -D NetCDF_PATH:PATH=/usr/local/netcdf/432_inter18 -D PnetCDF_PATH:STRING="/usr/local/PnetCDF" -D GENF90_PATH=/home/slhdesa/cesm/cime/src/externals/genf90  /home/slhdesa/cesm/cime/src/externals/pio1

-- The C compiler identification is Intel 18.0.3.20180410

-- The Fortran compiler identification is Intel 18.0.3.20180410

-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc

-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Detecting C compile features

-- Detecting C compile features - done

-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90

-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90  -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90

-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90 -- yes

-- Found NetCDF_C: /usr/lib64/libnetcdf.so  

-- Checking NetCDF version

-- Checking NetCDF version - 4.3.3.1

-- Checking whether NetCDF has parallel support

-- Checking whether NetCDF has parallel support - no

-- Looking for nc_set_log_level

-- Looking for nc_set_log_level - not found

-- Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) 

-- Found PnetCDF_Fortran: /usr/local/PnetCDF/lib/libpnetcdf.a  

-- Checking PnetCDF version

-- Checking PnetCDF version - 1.11.2

-- MPIIO detected and enabled.

-- MPI Fortran module detected and enabled.

-- Configuring done

-- Generating done

-- Build files have been written to: /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1

make: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

cat: Filepath: No such file or directory

cat: Srcfiles: No such file or directory

%file_modules

%file_includes

@check_includes

 

Building PIO without netcdf support TRUE FALSE

CMake Warning:

  Manually-specified variables were not used by the project:

 

    CMAKE_CXX_FLAGS

    GPTL_PATH

    PIO_ENABLE_TESTS

make -j 8

/usr/local/bin/cmake -S/home/slhdesa/cesm/cime/src/externals/pio1 -B/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0

/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marks

make -f CMakeFiles/Makefile2 all

make[1]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/depend

make[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

[  2%] Generating pio_msg_getput_callbacks.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90

[ 10%] Generating pionfread_mod.F90

[ 10%] Generating pionfatt_mod.F90

[ 12%] Generating pionfwrite_mod.F90

[ 12%] Generating pionfput_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90

[ 15%] Generating pionfget_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90

[ 17%] Generating alloc_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90

[ 20%] Generating box_rearrange.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90

[ 22%] Generating rearrange.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90

[ 25%] Generating iompi_mod.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90

[ 27%] Generating piodarray.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90

[ 30%] Generating pio_spmd_utils.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/slhdesa/cesm/cime/src/externals/pio1 /home/slhdesa/cesm/cime/src/externals/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=

Scanning dependencies of target pio

make[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/build

make[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

[ 32%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o

[ 35%] Building C object pio/CMakeFiles/pio.dir/topology.c.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio  -qno-opt-dynamic-align -fp-model precise -std=gnu99   -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -o CMakeFiles/pio.dir/topology.c.o   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/topology.c

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds.mod pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build

[ 37%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_support.F90 -o CMakeFiles/pio.dir/pio_support.F90.o

[ 40%] Building Fortran object pio/CMakeFiles/pio.dir/pio_types.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_types.mod pio/CMakeFiles/pio.dir/pio_types.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_support.mod pio/CMakeFiles/pio.dir/pio_support.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.build

[ 42%] Building Fortran object pio/CMakeFiles/pio.dir/alloc_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.o

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cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.o

[ 50%] Building Fortran object pio/CMakeFiles/pio.dir/pio_utils.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o

[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o

[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_utils.F90 -o CMakeFiles/pio.dir/pio_utils.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_mod.F90 -o CMakeFiles/pio.dir/pio_msg_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_mpi_utils.F90 -o CMakeFiles/pio.dir/pio_mpi_utils.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils.mod pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_utils.mod pio/CMakeFiles/pio.dir/pio_utils.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_utils.F90.o.provides.build

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/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_msg_mod.mod pio/CMakeFiles/pio.dir/pio_msg_mod.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.build

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cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfatt_mod.F90 -o CMakeFiles/pio.dir/pionfatt_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfget_mod.F90 -o CMakeFiles/pio.dir/pionfget_mod.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/alloc_mod.mod pio/CMakeFiles/pio.dir/alloc_mod.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.build

[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o

[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.o

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cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o CMakeFiles/pio.dir/iompi_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.o

[ 70%] Building Fortran object pio/CMakeFiles/pio.dir/nf_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/nf_mod.F90 -o CMakeFiles/pio.dir/nf_mod.F90.o

[ 72%] Building Fortran object pio/CMakeFiles/pio.dir/pionfread_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfread_mod.F90 -o CMakeFiles/pio.dir/pionfread_mod.F90.o

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/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.build

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build

[ 75%] Building Fortran object pio/CMakeFiles/pio.dir/box_rearrange.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o

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[ 77%] Building Fortran object pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o

[ 80%] Building Fortran object pio/CMakeFiles/pio.dir/pionfput_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfput_mod.F90 -o CMakeFiles/pio.dir/pionfput_mod.F90.o

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[ 82%] Building Fortran object pio/CMakeFiles/pio.dir/rearrange.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/rearrange.mod pio/CMakeFiles/pio.dir/rearrange.mod.stamp Intel

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[ 85%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o

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[ 87%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfput_mod.mod pio/CMakeFiles/pio.dir/pionfput_mod.mod.stamp Intel

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[ 90%] Building Fortran object pio/CMakeFiles/pio.dir/pio_nf_utils.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils.mod pio/CMakeFiles/pio.dir/pio_nf_utils.mod.stamp Intel

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/usr/local/bin/cmake -E cmake_copy_f90_mod pio/piolib_mod.mod pio/CMakeFiles/pio.dir/piolib_mod.mod.stamp Intel

/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.build

[ 92%] Building Fortran object pio/CMakeFiles/pio.dir/pio.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio.F90 -o CMakeFiles/pio.dir/pio.F90.o

/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio.mod pio/CMakeFiles/pio.dir/pio.mod.stamp Intel

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[ 95%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.o

[ 97%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include  -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include   -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

[100%] Linking Fortran static library libpio.a

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -P CMakeFiles/pio.dir/cmake_clean_target.cmake

cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pio.dir/link.txt --verbose=1

/usr/bin/ar qc libpio.a  CMakeFiles/pio.dir/pio.F90.o CMakeFiles/pio.dir/pio_kinds.F90.o CMakeFiles/pio.dir/nf_mod.F90.o CMakeFiles/pio.dir/ionf_mod.F90.o CMakeFiles/pio.dir/pio_types.F90.o CMakeFiles/pio.dir/piolib_mod.F90.o CMakeFiles/pio.dir/pio_mpi_utils.F90.o CMakeFiles/pio.dir/pio_nf_utils.F90.o CMakeFiles/pio.dir/pio_utils.F90.o CMakeFiles/pio.dir/pio_support.F90.o CMakeFiles/pio.dir/calcdisplace_mod.F90.o CMakeFiles/pio.dir/calcdecomp.F90.o CMakeFiles/pio.dir/pio_msg_mod.F90.o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

/usr/bin/ranlib libpio.a

make[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

[100%] Built target pio

make[1]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'

/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles 0

/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value.   [IOPROC]

  subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )

-----------------------------------------^

/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value.   [NUMIOTASKS]

  subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )

-------------------------------------------------^

 

Installing pio version 1


 




###################################################################



  <machine MACH="centos7-linux">

    <DESC>

      Example port to centos7 linux system with gcc, netcdf, pnetcdf and mpich

      using modules from http://www.admin-magazine.com/HPC/Articles/Environment-Modules

    </DESC>

    <NODENAME_REGEX>regex.expression.matching.your.machine</NODENAME_REGEX>

    <OS>LINUX</OS>

    <PROXY> https://howto.get.out </PROXY>

    <COMPILERS>intel,gnu</COMPILERS>

    <MPILIBS>mpich,openmpi</MPILIBS>

    <PROJECT>none</PROJECT>

    <SAVE_TIMING_DIR></SAVE_TIMING_DIR>

    <CIME_OUTPUT_ROOT>$ENV{HOME}/cesm/scratch</CIME_OUTPUT_ROOT>

    <DIN_LOC_ROOT>$ENV{HOME}/cesm/inputdata</DIN_LOC_ROOT>

    <DIN_LOC_ROOT_CLMFORC>$ENV{HOME}/cesm/inputdata/lmwg</DIN_LOC_ROOT_CLMFORC>

    <DOUT_S_ROOT>$ENV{HOME}/cesm/archive/$CASE</DOUT_S_ROOT>

    <BASELINE_ROOT>$ENV{HOME}/cesm/cesm_baselines</BASELINE_ROOT>

    <CCSM_CPRNC>$ENV{HOME}/cesm/tools/cime/tools/cprnc/cprnc</CCSM_CPRNC>

    <GMAKE>make</GMAKE>

    <GMAKE_J>8</GMAKE_J>

    <BATCH_SYSTEM>none</BATCH_SYSTEM>

    <SUPPORTED_BY>me@my.address</SUPPORTED_BY>

    <MAX_TASKS_PER_NODE>8</MAX_TASKS_PER_NODE>

    <MAX_MPITASKS_PER_NODE>8</MAX_MPITASKS_PER_NODE>

    <PROJECT_REQUIRED>FALSE</PROJECT_REQUIRED>

    <mpirun mpilib="default">

      <executable>mpiexec</executable>

      <arguments>

        <arg name="ntasks"> -np {{ total_tasks }} </arg>

      </arguments>

    </mpirun>

    <mpirun mpilib="openmpi">

      <executable>mpirun</executable>

      <arguments>

        <arg name="anum_tasks"> -np {{ total_tasks }}</arg>

      </arguments>

    </mpirun>

    <mpirun mpilib="mpich">

      <executable>mpirun</executable>

      <arguments>

        <arg name="machine_file">-hostfile $ENV{PBS_JOBID}</arg>

        <arg name="tasks_per_node"> -ppn $MAX_MPITASKS_PER_NODE</arg>

        <arg name="num_tasks"> -n {{ total_tasks }}</arg>

      </arguments>

 

    </mpirun>

    <module_system type="module"allow_error="true">

      <init_path lang="perl">/usr/share/Modules/init/perl.pm</init_path>

      <init_path lang="python">/usr/share/Modules/init/python.py</init_path>

      <init_path lang="csh">/usr/share/Modules/init/csh</init_path>

      <init_path lang="sh">/usr/share/Modules/init/sh</init_path>

      <cmd_path lang="perl">/usr/bin/modulecmd perl</cmd_path>

      <cmd_path lang="python">/usr/bin/modulecmd python</cmd_path>

      <cmd_path lang="sh">module</cmd_path>

      <cmd_path lang="csh">module</cmd_path>

      <modules>

        <command name="purge"/>

      </modules>

      <modules compiler="intel">

        <command name="load">intel18/compiler-18</command>

        <command name="load">intel18/mpich-3.2</command>

        <command name="load">intel18/openmpi-2.0.2</command>

      </modules>

      <modules compiler="gnu">

        <command name="load">compiler/gnu/8.2.0</command>

        <command name="load">mpi/3.3/gcc-8.2.0</command>

        <command name="load">tool/netcdf/4.6.1/gcc-8.1.0</command>

      </modules>

    </module_system>

    <environment_variables>

      <env name="OMP_STACKSIZE">256M</env>

      <env name="NETCDF_PATH">/usr/local/netcdf/432_inter18</env>

      <env name="PNETCDF_PATH">/usr/local/PnetCDF</env>

    </environment_variables>

    <resource_limits>

      <resource name="RLIMIT_STACK">-1</resource>

    </resource_limits>

  </machine>


  

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