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Error building CESM1_2_2 on Yellowstone

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taylor.hughlett@...
Error building CESM1_2_2 on Yellowstone

Good morning,

I am attempting to build CESM1_2_2 on yellowstone, and am getting the following error:

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a319): more undefined references to `shr_infnan_mod_mp_set_nan_2d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_init_pft_pstate_type_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a4a0): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a54a): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a5f4): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a69e): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a748): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5a7ff): more undefined references to `shr_infnan_mod_mp_set_nan_1d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_init_pft_pstate_type_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5ad84): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5ae63): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5af42): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b021): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b100): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b1df): more undefined references to `shr_infnan_mod_mp_set_nan_2d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_init_pft_pstate_type_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b368): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b412): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b4bc): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b566): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b610): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x5b756): more undefined references to `shr_infnan_mod_mp_set_nan_1d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_init_pft_ecophys_constants_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60c6e): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60d33): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60df8): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60ebd): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60f51): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x60fe5): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x61079): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x6110d): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x611a1): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x61235): more undefined references to `shr_infnan_mod_mp_set_nan_1d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_initclmtype_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x6606a): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66536): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x665df): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x666c0): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66769): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66812): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x668bb): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66964): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66c63): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o):/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x66d0c): more undefined references to `shr_infnan_mod_mp_set_nan_1d_double_' follow

/glade/scratch/hughlett/test/bld/lib//liblnd.a(clmtypeInitMod.o): In function `clmtypeinitmod_mp_initclmtype_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/main/clmtypeInitMod.F90:(.text+0x670ec): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(domainMod.o): In function `domainmod_mp_domain_init_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/util_share/domainMod.F90:(.text+0x2959): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/util_share/domainMod.F90:(.text+0x2995): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/util_share/domainMod.F90:(.text+0x29d1): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(ncdio_pio.o): In function `ncdio_pio_mp_ncd_io_real_var1_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/util_share/ncdio_pio.F90:(.text+0x9ff8): undefined reference to `shr_infnan_mod_mp_set_nan_0d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(ncdio_pio.o): In function `ncdio_pio_mp_ncd_io_real_var2_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/util_share/ncdio_pio.F90:(.text+0xc82b): undefined reference to `shr_infnan_mod_mp_set_nan_0d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(CNAllocationMod.o): In function `cnallocationmod_mp_cnallocationinit_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/CNAllocationMod.F90:(.text+0x5a02): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/CNAllocationMod.F90:(.text+0x5f4e): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/CNAllocationMod.F90:(.text+0x5fea): undefined reference to `shr_infnan_mod_mp_set_nan_1d_double_'

/glade/scratch/hughlett/test/bld/lib//liblnd.a(STATICEcosysDynMod.o): In function `staticecosysdynmod_mp_ecosystemdynini_':

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/STATICEcosysDynMod.F90:(.text+0x1b7): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/STATICEcosysDynMod.F90:(.text+0x267): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/STATICEcosysDynMod.F90:(.text+0x31b): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

/glade/p/cesm/releases/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem/STATICEcosysDynMod.F90:(.text+0x3b4): undefined reference to `shr_infnan_mod_mp_set_nan_2d_double_'

 

gmake: *** [/glade/scratch/hughlett/test/bld/cesm.exe] Error 1


After having read through previous responses in the forums, I believe this is a library issue, but am not 100% sure. Any help would be greatly appreciated.

Taylor M. Hughlett, Ph.D.
Postdoctoral Research Fellow
Department of Earth & Environmental Sciences
University of Texas at Arlington

jedwards

Something is corrupt in your build.   I was able to clone your case and build to complettion.   

Try

rm -fr /glade/scratch/hughlett/test/bld/   

and build again.   

CESM Software Engineer

jedwards

Something is corrupt in your build.   I was able to clone your case and build to complettion.   

Try

rm -fr /glade/scratch/hughlett/test/bld/   

and build again.   

CESM Software Engineer

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