An error of CESM2 building

3 posts / 0 new

Last post

October 8, 2018 - 5:16am

zhouchunjiang@...

An error of CESM2 building

I'm porting CESM2 with a new machine and i get an error when i run case.build.

It seems that something wrong with my compiler.But i have no idea.

Here is the complete log , my config_compiler.xml , config_machines.xml and system/software situation.

Thank you for any help!

[hg@ln01 test]$ ./case.build

Building case in directory /public/hg/peng/test

sharedlib_only is False

model_only is False

Generating component namelists as part of build

Creating component namelists

Calling /public/hg/peng/cesm/components/cam//cime_config/buildnml

...calling cam buildcpp to set build time options

CAM namelist copy: file1 /public/hg/peng/test/Buildconf/camconf/atm_in file2 /public/hg/peng/archive2/run/projects/test/run/atm_in

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/slnd/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/sice/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/data_comps/docn/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/srof/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/sglc/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/swav/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/components/stub_comps/sesp/cime_config/buildnml

Calling /public/hg/peng/cesm/cime/src/drivers/mct/cime_config/buildnml

Finished creating component namelists

Building gptl with output to file /public/hg/peng/archive2/run/projects/test/bld/gptl.bldlog.181008-165311

Calling /public/hg/peng/cesm/cime/src/build_scripts/buildlib.gptl

Component gptl build complete with 9 warnings

Building mct with output to file /public/hg/peng/archive2/run/projects/test/bld/mct.bldlog.181008-165311

Calling /public/hg/peng/cesm/cime/src/build_scripts/buildlib.mct

Component mct build complete with 56 warnings

Building pio with output to file /public/hg/peng/archive2/run/projects/test/bld/pio.bldlog.181008-165311

Calling /public/hg/peng/cesm/cime/src/build_scripts/buildlib.pio

Component pio build complete with 31 warnings

Building csm_share with output to file /public/hg/peng/archive2/run/projects/test/bld/csm_share.bldlog.181008-165311

Calling /public/hg/peng/cesm/cime/src/build_scripts/buildlib.csm_share

Component csm_share build complete with 124 warnings

Building atm with output to /public/hg/peng/archive2/run/projects/test/bld/atm.bldlog.181008-165311

Building lnd with output to /public/hg/peng/archive2/run/projects/test/bld/lnd.bldlog.181008-165311

Building ice with output to /public/hg/peng/archive2/run/projects/test/bld/ice.bldlog.181008-165311

Building ocn with output to /public/hg/peng/archive2/run/projects/test/bld/ocn.bldlog.181008-165311

Building rof with output to /public/hg/peng/archive2/run/projects/test/bld/rof.bldlog.181008-165311

Building glc with output to /public/hg/peng/archive2/run/projects/test/bld/glc.bldlog.181008-165311

Building wav with output to /public/hg/peng/archive2/run/projects/test/bld/wav.bldlog.181008-165311

Building esp with output to /public/hg/peng/archive2/run/projects/test/bld/esp.bldlog.181008-165311

Component lnd build complete with 1 warnings

Component wav build complete with 1 warnings

slnd built in 5.380197 seconds

swav built in 5.363935 seconds

Component rof build complete with 1 warnings

srof built in 5.427232 seconds

Component ice build complete with 1 warnings

sice built in 5.499429 seconds

Component esp build complete with 1 warnings

sesp built in 5.505163 seconds

Component glc build complete with 1 warnings

sglc built in 5.535266 seconds

Component ocn build complete with 3 warnings

docn built in 7.833208 seconds

/public/hg/peng/cesm/components/cam/src/dynamics/fv/par_vecsum.F90(107): error #6378: SUBROUTINE must be present on the end-subroutine-stmt of an internal or module subroutine

Component atm build complete with 235 warnings

cam built in 481.139815 seconds

ERROR: BUILD FAIL: cam.buildlib failed, cat /public/hg/peng/archive2/run/projects/test/bld/atm.bldlog.181008-165311

Attachment:

atm.bldlog.181008-165311.txt

config_compiler.xml.txt

config_machine.xml.txt

sysytem and software.txt

October 8, 2018 - 8:08am

jedwards

It looks liike you are using an old version of gnu compilers. Please try updating to gnu 8.x or use another compiler. It also looks like you are mixing a build with gnu and a netcdf library built with intel - that's not going to work either.

October 10, 2018 - 3:29am

linxf@...

An error of CESM2 building

I'm porting CESM2 with a new machine and i get an error when i run case.build. The gnu compiler version is 4.4.6

I have no idea.

Thank you for any help!

[linxf@login03 shinstall]$ cat /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/pio.bldlog.181009-225904

make /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/Makefile -C /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1 CASEROOT=/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/scripts/b.e20.B1850.f19_g17.test MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1 CASETOOLS=/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/scripts/b.e20.B1850.f19_g17.test/Tools PIO_VERSION=1 MPILIB=mpich SHAREDLIBROOT=/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio EXEROOT=/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld COMPILER=gnu BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/scripts/b.e20.B1850.f19_g17.test/Tools/Makefile

make: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/scripts/b.e20.B1850.f19_g17.test/Tools/mkSrcfiles

cp -f Filepath Deppath

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/scripts/b.e20.B1850.f19_g17.test/Tools/mkDepends Deppath Srcfiles > Depends

make: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1; \

CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/CMake;/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio2/cmake" -D NetCDF_PATH:PATH=/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1 -D PnetCDF_PATH:STRING="/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0" -D GENF90_PATH=/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/genf90 /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1

-- The C compiler identification is GNU 4.4.6

-- The Fortran compiler identification is GNU 4.4.6

-- Check for working C compiler: /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpicc

-- Check for working C compiler: /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpicc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Detecting C compile features

-- Detecting C compile features - done

-- Check for working Fortran compiler: /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90

-- Check for working Fortran compiler: /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 supports Fortran 90

-- Checking whether /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 supports Fortran 90 -- yes

-- Fortran compiler does not support c_sizeof function

-- Found NetCDF_C: /wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/lib/libnetcdf.so

-- Checking NetCDF version

-- Checking NetCDF version - 4.3.3.1

-- Checking whether NetCDF has parallel support

-- Checking whether NetCDF has parallel support - no

-- Looking for nc_set_log_level

-- Looking for nc_set_log_level - not found

-- Found NetCDF_Fortran: /wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/lib/libnetcdff.a

-- Found PnetCDF_Fortran: /wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/lib/libpnetcdf.so

-- Checking PnetCDF version

-- Checking PnetCDF version - 1.9.0

-- MPIIO detected and enabled.

-- MPI Fortran module detected and enabled.

-- Configuring done

-- Generating done

-- Build files have been written to: /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1

make: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

cat: Filepath: No such file or directory

cat: Srcfiles: No such file or directory

%file_modules

%file_includes

@check_includes

Building PIO with netcdf support

CMake Warning:

Manually-specified variables were not used by the project:

CMAKE_CXX_FLAGS

GPTL_PATH

PIO_ENABLE_TESTS

make -j 1

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -H/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1 -B/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_progress_start /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/CMakeFiles /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marks

make -f CMakeFiles/Makefile2 all

make[1]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/depend

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[ 2%] Generating pio_msg_getput_callbacks.F90

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/genf90/genf90.pl /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90

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[ 30%] Generating pio_spmd_utils.F90

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1 && /wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_depends "Unix Makefiles" /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1 /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1 /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=

Scanning dependencies of target pio

make[2]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/requires

make[2]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 32%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp GNU

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make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 40%] Building Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/calcdecomp pio/CMakeFiles/pio.dir/calcdecomp.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 42%] Building Fortran object pio/CMakeFiles/pio.dir/alloc_mod.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/alloc_mod pio/CMakeFiles/pio.dir/alloc_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_utils.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 52%] Building Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o CMakeFiles/pio.dir/iompi_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/iompi_mod pio/CMakeFiles/pio.dir/iompi_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/pionfread_mod.F90 -o CMakeFiles/pio.dir/pionfread_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/pionfread_mod pio/CMakeFiles/pio.dir/pionfread_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 57%] Building Fortran object pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/pionfwrite_mod pio/CMakeFiles/pio.dir/pionfwrite_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

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make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 60%] Building Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/calcdisplace_mod pio/CMakeFiles/pio.dir/calcdisplace_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 62%] Building Fortran object pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/pio_spmd_utils pio/CMakeFiles/pio.dir/pio_spmd_utils.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/box_rearrange.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/box_rearrange pio/CMakeFiles/pio.dir/box_rearrange.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 67%] Building Fortran object pio/CMakeFiles/pio.dir/rearrange.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/rearrange pio/CMakeFiles/pio.dir/rearrange.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 70%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.o

cd /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/bin/mpif90 -DNO_C_SIZEOF -DUSEMPIIO -D_NETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DLINUX -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/netcdf-4.3.3.1/include -I/wps/home/linxf/CLM/CLM4.5_install/software/mpich-3.1.1/include -I/wps/home/linxf/CLM/CLM5.0_install/software/parallel-netcdf-1.9.0/include -I/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/piodarray pio/CMakeFiles/pio.dir/piodarray.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 72%] Building Fortran object pio/CMakeFiles/pio.dir/ionf_mod.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/ionf_mod pio/CMakeFiles/pio.dir/ionf_mod.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 75%] Building Fortran object pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp GNU

/wps/home/linxf/CLM/CLM4.5_install/software/cmake-3.4.1/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.build

make[3]: Entering directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

[ 77%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.o

make[3]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make[2]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

make[1]: Leaving directory `/wps/home/linxf/CLM/cesm_outdata/cesm2_0_0/b.e20.B1850.f19_g17.test/bld/gnu/mpich/nodebug/nothreads/pio/pio1'

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2579.18:

character(len=:), allocatable :: myfname

Error: Syntax error in CHARACTER declaration at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2608.25:

allocate(character(len=namelen) :: myfname)

Error: Syntax error in ALLOCATE statement at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2749.18:

character(len=:), allocatable :: myfname

Error: Syntax error in CHARACTER declaration at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2797.25:

allocate(character(len=namelen) :: myfname)

Error: Syntax error in ALLOCATE statement at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2799.14:

myfname = trim(fname)

Error: Symbol 'myfname' at (1) has no IMPLICIT type

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2610.14:

myfname = trim(fname)

Error: Symbol 'myfname' at (1) has no IMPLICIT type

make[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1

make[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2

make[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2

make: *** [all] Error 2

ERROR: /wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2579.18:

character(len=:), allocatable :: myfname

Error: Syntax error in CHARACTER declaration at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2608.25:

allocate(character(len=namelen) :: myfname)

Error: Syntax error in ALLOCATE statement at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2749.18:

character(len=:), allocatable :: myfname

Error: Syntax error in CHARACTER declaration at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2797.25:

allocate(character(len=namelen) :: myfname)

Error: Syntax error in ALLOCATE statement at (1)

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2799.14:

myfname = trim(fname)

Error: Symbol 'myfname' at (1) has no IMPLICIT type

/wps/home/linxf/CLM/cesm_code/cesm2_0_0/cime/src/externals/pio1/pio/piolib_mod.F90:2610.14:

myfname = trim(fname)

Error: Symbol 'myfname' at (1) has no IMPLICIT type

make[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1

make[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2

make[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2

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