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ERROR: CIME models require NETCDF in PIO build

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robert.letscher@...
ERROR: CIME models require NETCDF in PIO build

I'm attempting to setup cesm v2 to run on my university cluster for the first time and I'm encountering an error in the pio build of .case.build stating that CIME requires NETCDF in the PIO build. I've listed the directory locations on my cluster of netcdf, C++ netcdf, and fortran netcdf as well as the associated libraries in the file 'config_machines.xml' but based on the pio.bldlog file it appears that netcdf_fortran_libary and netcdf_fortran_include_dir are missing (could not be found). pio.bldlog pasted below; config_machines.xml attached. My compiler is gnu v4.


gmake /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/Makefile -C /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASEROOT=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASETOOLS=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools PIO_VERSION=1 MPILIB=openmpi SHAREDLIBROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio EXEROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld COMPILER=gnu BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/Makefile

gmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkSrcfiles

cp -f Filepath Deppath

/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkDepends  Deppath Srcfiles > Depends

gmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1; \

 CC=/usr/lib64/openmpi/bin/mpicc CXX=/usr/lib64/openmpi/bin/mpicxx FC=/usr/lib64/openmpi/bin/mpif90 LDFLAGS="" cmake  -D CMAKE_Fortran_FLAGS:STRING="-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-std=gnu99   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-std=gnu99   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/CMake;/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio2/cmake"  -D NetCDF_C_PATH:PATH=/usr -D NetCDF_Fortran_PATH:PATH=/usr -D WITH_PNETCDF:LOGICAL=FALSE -D PIO_USE_MPIIO:LOGICAL=FALSE -D GENF90_PATH=/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90  /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1

-- The C compiler identification is GNU 4.8.5

-- The Fortran compiler identification is GNU

-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc

-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90

-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90  -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90

-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- yes

-- Fortran compiler does not support c_sizeof function

-- Found NetCDF_C: /usr/lib64/libnetcdf.so  

-- Checking NetCDF version

-- Checking NetCDF version - 4.3.3.1

-- Checking whether NetCDF has parallel support

-- Checking whether NetCDF has parallel support - yes

-- Looking for nc_set_log_level

-- Looking for nc_set_log_level - not found

-- Could NOT find NetCDF_Fortran (missing:  NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) 

-- MPI Fortran module detected and enabled.

-- Configuring done

-- Generating done

-- Build files have been written to: /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1

gmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

cat: Filepath: No such file or directory

cat: Srcfiles: No such file or directory

%file_modules

%file_includes

@check_includes


Building PIO without netcdf support TRUE FALSE

CMake Warning at pio/CMakeLists.txt:48 (MESSAGE):

  Warning: Not building with PNetcdf - cannot run all regression tests.



CMake Warning:

  Manually-specified variables were not used by the project:


    CMAKE_CXX_FLAGS

    GPTL_PATH

    PIO_ENABLE_TESTS

gmake -j 8

/usr/bin/cmake -H/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 -B/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0

/usr/bin/cmake -E cmake_progress_start /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marks

gmake -f CMakeFiles/Makefile2 all

gmake[1]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/depend

gmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 12

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 1

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 2

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 3

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 4

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 5

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 6

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 7

[ 10%] [ 10%] [ 10%] [ 12%] [ 12%] [ 17%] [ 20%] [ 20%] Generating pio_msg_getput_callbacks.F90

Generating pionfread_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90

Generating pionfwrite_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90

Generating pionfatt_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90

Generating pionfput_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90

Generating pionfget_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90

Generating alloc_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90

Generating box_rearrange.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 8

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 9

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 10

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 11

[ 25%] [ 30%] [ 30%] [ 30%] Generating rearrange.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90

Generating piodarray.F90

Generating pio_spmd_utils.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90

Generating iompi_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=

Scanning dependencies of target pio

gmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/requires

gmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build

gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 14

[ 33%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o

/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp GNU

/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build

gmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.build

gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build

gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 22

/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 17

[ 38%] [ 38%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_support.F90 -o CMakeFiles/pio.dir/pio_support.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/pio_types.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_utils.F90 -o CMakeFiles/pio.dir/pio_utils.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/alloc_mod.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_mpi_utils.F90 -o CMakeFiles/pio.dir/pio_mpi_utils.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_mod.F90 -o CMakeFiles/pio.dir/pio_msg_mod.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfget_mod.F90 -o CMakeFiles/pio.dir/pionfget_mod.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfatt_mod.F90 -o CMakeFiles/pio.dir/pionfatt_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/nf_mod.F90 -o CMakeFiles/pio.dir/nf_mod.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o CMakeFiles/pio.dir/iompi_mod.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o

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cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o

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Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.o

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90  -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none   -O  -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1  -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio    -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o

/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils pio/CMakeFiles/pio.dir/pio_nf_utils.mod.stamp GNU

/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_nf_utils.F90.o.provides.build

Linking Fortran static library libpio.a

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/bin/cmake -P CMakeFiles/pio.dir/cmake_clean_target.cmake

cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/bin/cmake -E cmake_link_script CMakeFiles/pio.dir/link.txt --verbose=1

/usr/bin/ar cr libpio.a  CMakeFiles/pio.dir/pio.F90.o CMakeFiles/pio.dir/pio_kinds.F90.o CMakeFiles/pio.dir/nf_mod.F90.o CMakeFiles/pio.dir/ionf_mod.F90.o CMakeFiles/pio.dir/pio_types.F90.o CMakeFiles/pio.dir/piolib_mod.F90.o CMakeFiles/pio.dir/pio_mpi_utils.F90.o CMakeFiles/pio.dir/pio_nf_utils.F90.o CMakeFiles/pio.dir/pio_utils.F90.o CMakeFiles/pio.dir/pio_support.F90.o CMakeFiles/pio.dir/calcdisplace_mod.F90.o CMakeFiles/pio.dir/calcdecomp.F90.o CMakeFiles/pio.dir/pio_msg_mod.F90.o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o

/usr/bin/ranlib libpio.a

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/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39

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Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"

Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"

Installing pio version 1

 

ERROR: CIME models require NETCDF in PIO build

-Robert Letscher
University of New Hampshire

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