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error (ld: symbol(s) not found for architecture x86_64) with ./cesm_build

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msafeeq@...
error (ld: symbol(s) not found for architecture x86_64) with ./cesm_build

Hello everyone

I am porting cesm1_2_2 on a Mac Pro with Yosemite (3.7 GHz Quad-Core Intel Xeon E5, 32 GB RAM). However, now I am stuck to this error with ./cesm_build.

 

Here is the cesm.bldlog:

 

Wed Jan 28 12:50:32 PST 2015 /Users/msafeeq/Case_Brazil/bld/cesm.bldlog.150128-125000
-------------------------------------------------------------------------
 Building a single executable version of CESM
-------------------------------------------------------------------------
cat: Srcfiles: No such file or directory
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkSrcfiles
cp -f /Users/msafeeq/Case_Brazil/bld/cesm/obj/Filepath /Users/msafeeq/Case_Brazil/bld/cesm/obj/Deppath
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkDepends  Deppath Srcfiles > /Users/msafeeq/Case_Brazil/bld/cesm/obj/Depends
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_diag_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_esmf.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/mrg_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_flux_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_hist_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_mctext_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_rest_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_domain_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_frac_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:208.52:

   type (ESMF_Clock), target, SAVE       :: EClock_a
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:207.52:

   type (ESMF_Clock), target, SAVE       :: EClock_d      ! driver clock
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:212.52:

   type (ESMF_Clock), target, SAVE       :: EClock_g
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:211.52:

   type (ESMF_Clock), target, SAVE       :: EClock_i
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:209.52:

   type (ESMF_Clock), target, SAVE       :: EClock_l
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:210.52:

   type (ESMF_Clock), target, SAVE       :: EClock_o
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:213.52:

   type (ESMF_Clock), target, SAVE       :: EClock_r
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:214.52:

   type (ESMF_Clock), target, SAVE       :: EClock_w
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:160.51:

   type(seq_map), SAVE :: mapper_Ca2x(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:172.51:

   type(seq_map), SAVE :: mapper_Cg2x(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:168.51:

   type(seq_map), SAVE :: mapper_Ci2x(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:162.51:

   type(seq_map), SAVE :: mapper_Cl2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:170.51:

   type(seq_map), SAVE :: mapper_Co2x(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:166.51:

   type(seq_map), SAVE :: mapper_Cr2x(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:164.51:

   type(seq_map), SAVE :: mapper_Cs2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:174.51:

   type(seq_map), SAVE :: mapper_Cw2x(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:161.51:

   type(seq_map), SAVE :: mapper_Cx2a(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:173.51:

   type(seq_map), SAVE :: mapper_Cx2g(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:169.51:

   type(seq_map), SAVE :: mapper_Cx2i(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:163.51:

   type(seq_map), SAVE :: mapper_Cx2l(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:171.51:

   type(seq_map), SAVE :: mapper_Cx2o(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:167.51:

   type(seq_map), SAVE :: mapper_Cx2r(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:165.51:

   type(seq_map), SAVE :: mapper_Cx2s(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:175.51:

   type(seq_map), SAVE :: mapper_Cx2w(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:183.37:

   type(seq_map), SAVE :: mapper_Fa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:179.37:

   type(seq_map), SAVE :: mapper_Fa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:188.37:

   type(seq_map), SAVE :: mapper_Fi2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:185.37:

   type(seq_map), SAVE :: mapper_Fl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:186.37:

   type(seq_map), SAVE :: mapper_Fl2r
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:181.37:

   type(seq_map), SAVE :: mapper_Fo2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:191.37:

   type(seq_map), SAVE :: mapper_Fr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:189.37:

   type(seq_map), SAVE :: mapper_Fr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:190.37:

   type(seq_map), SAVE :: mapper_Rr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:182.37:

   type(seq_map), SAVE :: mapper_Sa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:177.37:

   type(seq_map), SAVE :: mapper_Sa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:197.37:

   type(seq_map), SAVE :: mapper_Sa2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:195.38:

   type(seq_map), SAVE :: mapper_SFg2s
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:193.38:

   type(seq_map), SAVE :: mapper_SFi2o
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:194.38:

   type(seq_map), SAVE :: mapper_SFo2i
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:196.38:

   type(seq_map), SAVE :: mapper_SFs2g
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:187.37:

   type(seq_map), SAVE :: mapper_Si2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:199.37:

   type(seq_map), SAVE :: mapper_Si2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:184.37:

   type(seq_map), SAVE :: mapper_Sl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:180.37:

   type(seq_map), SAVE :: mapper_So2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:198.37:

   type(seq_map), SAVE :: mapper_So2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:192.37:

   type(seq_map), SAVE :: mapper_Sr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:200.37:

   type(seq_map), SAVE :: mapper_Sw2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:178.37:

   type(seq_map), SAVE :: mapper_Va2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:206.49:

   type (seq_timemgr_type), SAVE :: seq_SyncClock ! array of all clocks & alarm
                                                 1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_driver.F90
gfortran  -o /Users/msafeeq/Case_Brazil/bld/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/Users/msafeeq/Case_Brazil/bld/lib/ -latm  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lice  -L/Users/msafeeq/Case_Brazil/bld/lib/ -llnd  -L/Users/msafeeq/Case_Brazil/bld/lib/ -locn  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lrof  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lglc  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lwav -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/opt/local/lib -lnetcdff -L/opt/local/lib -Wl,-headerpad_max_install_names -lnetcdf -lnetcdf -L/opt/local/lib -lpnetcdf  /Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/mct/mpi-serial/libmpi-serial.a
Undefined symbols for architecture x86_64:
  "_MPI_Error_class", referenced from:
      _ncmpii_handle_error in libpnetcdf.a(error.o)
  "_MPI_File_close", referenced from:
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_delete", referenced from:
      _ncmpi_delete in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_get_info", referenced from:
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_File_open", referenced from:
      _ncmpii_check_mpifh in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
  "_MPI_File_read", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_at", referenced from:
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _hdr_fetch in libpnetcdf.a(header.o)
  "_MPI_File_read_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_File_set_view", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_sync", referenced from:
      _ncmpii_end_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_begin_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_sync in libpnetcdf.a(mpincio.o)
  "_MPI_File_write", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_at", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
  "_MPI_File_write_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_Get_address", referenced from:
      _ncmpii_abuf_free.isra.0 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _hdr_check_buffer in libpnetcdf.a(header.o)
      _hdr_get_NC_name in libpnetcdf.a(header.o)
      _hdr_get_NC_attrarray in libpnetcdf.a(header.o)
      _ncmpii_hdr_get_NC in libpnetcdf.a(header.o)
      ...
  "_MPI_Get_count", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
      ...
  "_MPI_Info_create", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
  "_MPI_Info_dup", referenced from:
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
  "_MPI_Info_free", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
      _ncmpiio_free in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_Info_get", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_striping in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_enddef in libpnetcdf.a(nc.o)
      _ncmpii__enddef in libpnetcdf.a(nc.o)
      _ncmpiio_extract_hints.part.0 in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
      ...
  "_MPI_Info_set", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_NC_enddef in libpnetcdf.a(nc.o)
  "_MPI_Pack_size", referenced from:
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_commit", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
      ...
  "_MPI_Type_contiguous", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_create_hindexed", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
  "_MPI_Type_create_struct", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_subarray", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_free", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      ...
  "_MPI_Type_get_contents", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_envelope", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_extent", referenced from:
      _ncmpii_subfile_getput_vars in libpnetcdf.a(subfile.o)
  "_MPI_Type_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_size", referenced from:
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_struct", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_vector", referenced from:
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/Makefile:625: recipe for target '/Users/msafeeq/Case_Brazil/bld/cesm.exe' failed
gmake: *** [/Users/msafeeq/Case_Brazil/bld/cesm.exe] Error 1

jedwards

It looks like you are trying to link pnetcdf with an mpi-serial build, they are incompatable.   Take pnetcdf out of the build and just use netcdf.  

CESM Software Engineer

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