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Error at the time of writing NetCDF file of CLM 4.5

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pawanvats5086@...
Error at the time of writing NetCDF file of CLM 4.5

Hi,

     I am using CESM1_2_2_CAMChem with user define compnent set that has atmospheric component  C4SSOA with CLM version 4.5 and is using GEOS5 offline meteorology, at resolution f09_f09. My simulation crashed during writing of 2011 August file of clm CSSOA_Nemin.clm2.h0.2011-08.nc with error message

 

 Opened file ./FGES_CSSOA_L45_Nemin.clm2.h0.2011-08.nc to write      2752512
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
 NetCDF: Numeric conversion not representable
 NetCDF: Numeric conversion not representable
 pio_support::pio_die:: myrank=           -1 : ERROR:
 pionfwrite_mod::write_nfdarray_double:          715 :
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 185 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[cn235:17087] 137 more processes have sent help message help-mpi-api.txt / mpi-abort
[cn235:17087] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
--------------------------------------------------------------------------
WARNING: A process refused to die despite all the efforts!
This process may still be running and/or consuming resources.

Host: cn235
PID:  17113

--------------------------------------------------------------------------
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 89 more processes have sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 161 more processes have sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 71 more processes have sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 54 more processes have sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 1 more process has sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
[cn235:17087] 35 more processes have sent help message help-orte-odls-base.txt / orte-odls-base:could-not-kill
                                                                                                                                                                                                 181861921,5   Bot

Kindly help

regards

Pawan Vats

 

 

 

jedwards

You are trying to write trash to the file.   Look in your output Logs for indications of bad values - NaN or ***.   Or try rerunning in DEBUG mode to see if you can find where the problem originates.

CESM Software Engineer

pawanvats5086@...

I had tried to run in debug mode by changing INFO_DBUG  value from defualt (1) to 3 in env_run.xml but still getting same error without any detail description. Could you please guide me how find out the achual cause of this problem and how it can be sort out.

Thanking you

 

jedwards

Set the DEBUG (not INFO_DBUG) flag to TRUE and clean and rebuild.

CESM Software Engineer

pawanvats5086@...

Dear Jedwards,

                       I  tried to run in debug mode by changing the DEBUG  flag to TRUE  from default False in env_build.xml and clean_build then rebuild as you have suggested to me but still I am facing the same error without any detailed description. Could you please guide me some other way to sort out this problem.

Thanking you

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