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Error when spinup BGC

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Error when spinup BGC

Hi all

  I am doing a spinup  with BGC compset by the steps of user's guide. After i submit, the simulation works fine. At the end of the simulation, it says it is successful. but some error come out.  May i get some advice or help?please! Thanks a lot!

The following is scripts which I used for my site:

 


./create_newcase -case bgcspinupr1 -res CLM_USRDAT -compset ICLM45BGCCROP -mach saber

cd bgcspinup1

./xmlchange CLM_BLDNML_OPTS="-bgc_spinup on" -append

./xmlchange CLM_FORCE_COLDSTART=on,RUN_TYPE=startup

./xmlchange DATM_MODE=CLM1PT

./xmlchange CLM_CONFIG_OPTS="-crop on" -append

./xmlchange CLM_BLDNML_OPTS="-irrig .true." -append

echo 'hist_nhtfrq = -8760' >> user_nl_clm

echo ' hist_dov2xy = .false. ' >> user_nl_clm

./cesm_setup

./bgcspinup.build

./xmlchange RESUBMIT=20,STOP_N=50,STOP_OPTION=nyears,STOP_DATE=10010101

 

./bgcspinup.submit

 

 

 

 

Error is shown above:

 

(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============

Archiving cesm output to /home/zyz/cesm/CESM1_2_2/archive/bgcspinupr1

Calling the short-term archiving script st_archive.sh

 

st_archive.sh: start of short-term archiving

st_archive.sh: restart files from end of run will be saved, 

               interim restart files will be deleted

st_archive.sh: short-term archiving completed successfully

RESUBMIT is now 0

-------------------------------------------------------------------------

 CESM BUILDNML SCRIPT STARTING

 - To prestage restarts, untar a restart.tar file into /home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run

 infile is /home/zyz/cesm/scripts/bgcspinupr1/Buildconf/cplconf/cesm_namelist 

CLM configure done.

CLM adding use_case 2000_control defaults for var sim_year with val 2000 

CLM adding use_case 2000_control defaults for var sim_year_range with val constant 

CLM adding use_case 2000_control defaults for var stream_year_first_ndep with val 2000 

CLM adding use_case 2000_control defaults for var stream_year_first_popdens with val 1850 

CLM adding use_case 2000_control defaults for var stream_year_last_ndep with val 2000 

CLM adding use_case 2000_control defaults for var stream_year_last_popdens with val 1850 

CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use 

 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY

-------------------------------------------------------------------------

-------------------------------------------------------------------------

 CESM PRESTAGE SCRIPT STARTING

 - Case input data directory, DIN_LOC_ROOT, is /home/zyz/cesm/mycsmdata/

 - Checking the existence of input datasets in DIN_LOC_ROOT

 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY

-------------------------------------------------------------------------

Thu May 31 00:20:57 CST 2018 -- CSM EXECUTION BEGINS HERE

Thu May 31 00:21:22 CST 2018 -- CSM EXECUTION HAS FINISHED

Model did not complete - see /home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/cesm.log.180531-002029

ccsm_postrun error: problem sourcing tempres 

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-233938: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-225901: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-221813: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-213724: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-205639: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-201602: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-193457: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-185409: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-181326: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-173247: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-165206: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-161132: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-153048: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-145012: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-140949: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-132913: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-124844: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-120811: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-112747: No such file or directory

rm: cannot remove ‘tempres’: No such file or directory

/home/zyz/cesm/CESM1_2_2/case/bgcspinupr1/run/timing/ccsm_timing_stats not found, exit

gzip: timing/ccsm_timing_stats.180530-104715: No such file or directory

  zhu
mmills

This part of the forum is for the WACCM model, so those with expertise in BGC will likely not see your question. You should post your question in the Biogeochemistry Modeling section of this forum:

https://bb.cgd.ucar.edu/forums/software-and-run-time-issues-5

Mike Mills
WACCM Liaison
Atmospheric Chemistry Division
NCAR Foothills Lab
Boulder, Colorado USA

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