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errors when making CESM1.2 run with interpinic initial file

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xiyanxu@...
errors when making CESM1.2 run with interpinic initial file

I am making regional run with I1850CRUCLM45BGC composet with CESM1.2.2. When the run is initialized with file created by interpinic, the history file is created but immediately terminated by the errors below.
These errors also occur in CESM1.2.1. The levgrnd, levlak,levdcmp,lon,lat,are, topo are shown in the history file,but the values are zero. I can see from the lnd.log.XXXX file that retart file was successfully read and history file was successfully difined. But after that when writing history file, errors occurs. If I don't use the interpiniced initial file, there's no error. Is there anyone can help? Thank you so much!!
cesm.log.XXXXXXX
....
WARNING: water balance error nstep = 0 indexc= 1761
errh2o= -2.89526396244037
Negative conc. in ch4tran. c,j,deficit (mol): 1766 3
1.682133945529015E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1167 3
1.912658951651470E-003
WARNING: water balance error nstep = 0 indexc= 507
errh2o= -2.89526396244037
Negative conc. in ch4tran. c,j,deficit (mol): 1430 2
2.256971696195905E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1220 3
1.131143484683002E-003
Negative conc. in ch4tran. c,j,deficit (mol): 239 2
Negative conc. in ch4tran. c,j,deficit (mol): 301 2
3.436985812089745E-003
1.175111523888160E-003
WARNING: snow balance error nstep = 0 indexc= 384 ltype:
2 errh2osno= -1.077903423870805E-005
Negative conc. in ch4tran. c,j,deficit (mol): 60 2
2.319489647517354E-003
Negative conc. in ch4tran. c,j,deficit (mol): 60 3
1.439129437016264E-003
Negative conc. in ch4tran. c,j,deficit (mol): 328 2
1.833615839044659E-003
Negative conc. in ch4tran. c,j,deficit (mol): 328 3
1.291774594302628E-003
Negative conc. in ch4tran. c,j,deficit (mol): 383 2
3.884753156414401E-003
WARNING: water balance error nstep = 0 indexc= 550
errh2o= -2.89526396244037
Negative conc. in ch4tran. c,j,deficit (mol): 342 2
Negative conc. in ch4tran. c,j,deficit (mol): 225 2
WARNING: water balance error nstep = 0 indexc= 521
1.831328459039113E-003
3.198380591750389E-003
Negative conc. in ch4tran. c,j,deficit (mol): 342 3
errh2o= -2.89526396244037
1.289461561423224E-003
Negative conc. in ch4tran. c,j,deficit (mol): 46 2
Negative conc. in ch4tran. c,j,deficit (mol): 356 2
2.210984140670391E-003
1.245439934396015E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1481 2
Negative conc. in ch4tran. c,j,deficit (mol): 1612 2
1.030888764698566E-003
1.401280647346900E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1553 2
2.249444222910866E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1494 2
1.486158061789606E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1359 3
1.394561011021509E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1443 2
Negative conc. in ch4tran. c,j,deficit (mol): 1371 3
Negative conc. in ch4tran. c,j,deficit (mol): 1569 2
3.233172429260094E-003
1.399118763440107E-003
2.444262816408948E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1534 2
1.518425181068753E-003
Negative conc. in ch4tran. c,j,deficit (mol): 1596 2
1.290672076213265E-003
Negative conc. in ch4tran. c,j,deficit (mol): 315 2
WARNING: water balance error nstep = 0 indexc= 194
1.293660990587647E-003
errh2o= -2.89526396244037
WARNING: snow balance error nstep = 0 indexc= 398 ltype:
2 errh2osno= -1.275479905027584E-005
Negative conc. in ch4tran. c,j,deficit (mol): 411 2
1.164683756181237E-003
Negative conc. in ch4tran. c,j,deficit (mol): 32 2
Negative conc. in ch4tran. c,j,deficit (mol): 211 2
Negative conc. in ch4tran. c,j,deficit (mol): 89 2
1.781484200262244E-003
1.245713043795234E-003
1.572831105360022E-003
WARNING: water balance error nstep = 0 indexc= 596
errh2o= -2.89526396244037
Negative conc. in ch4tran. c,j,deficit (mol): 74 2
1.573129284062894E-003
Negative conc. in ch4tran. c,j,deficit (mol): 370 2
Negative conc. in ch4tran. c,j,deficit (mol): 253 1
1.390435996798079E-003
1.078570420300920E-003
Negative conc. in ch4tran. c,j,deficit (mol): 253 2
4.410079368585279E-003
Negative conc. in ch4tran. c,j,deficit (mol): 285 2
Negative conc. in ch4tran. c,j,deficit (mol): 103 2
1.534708914969129E-003
1.710046916626776E-003
Negative conc. in ch4tran. c,j,deficit (mol): 180 2
1.931760110182332E-003
Negative conc. in ch4tran. c,j,deficit (mol): 180 3
Negative conc. in ch4tran. c,j,deficit (mol): 397 1
1.412713945968214E-003
1.248736827103428E-003
Negative conc. in ch4tran. c,j,deficit (mol): 397 2
4.422121276022629E-003
WARNING: water balance error nstep = 0 indexc= 282
errh2o= -2.89526396244037
WARNING: water balance error nstep = 0 indexc= 27
errh2o= -2.89526396244037
WARNING: water balance error nstep = 0 indexc= 210
errh2o= -2.89526396244037
Negative conc. in ch4tran. c,j,deficit (mol): 269 2
1.458577932343643E-003
Negative conc. in ch4tran. c,j,deficit (mol): 195 2
1.397832000215802E-003
Setting mpi info: striping_factor=16
Setting mpi info: striping_unit=1048576
Negative conc. in ch4tran. c,j,deficit (mol): 1180 3
1.791996740438412E-003
Opened file ./alaska_e21.clm2.h0.1950-01-01-00000.nc to write 262144
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
Rank 1 [Fri Aug 1 00:38:46 2014] [c7-0c2s2n2] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :
NetCDF: Numeric conversion not representable
Rank 125 [Fri Aug 1 00:38:46 2014] [c0-1c1s12n0] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 125
NetCDF: Numeric conversion not representable
pio_support::pio_die:: myrank= -1 : ERROR:
pionfwrite_mod::write_nfdarray_double: 246 :

NetCDF: Numeric conversion not representable

xiyanxu@...

an update:

I looked into the restart file created by interpinic. The lon and lat don't match the lat and lon of my domain file.  Anyone has any idea to fix it? 

erik

If you are using pnetcdf for your simulations with CLM, AND you are linking interpinic with versions of NetCDF before 4.3 -- it could be the following issue...

http://bugs.cgd.ucar.edu/show_bug.cgi?id=1634

If it sounds like that is the issue, rtry edoing your work with interpinic from scratch, but make sure you link with a NetCDF4.3 library.

Erik Kluzek ...............

CESM Land Model (CLM) Software Liason

CESM Software Engineering Group, NCAR

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

xiyanxu@...

Erik,

Thank you for the advice.
 I just looked at the bug on the page you provided. I am running on Edison with updated NetCDF4.3.0. What could the other problem be?
I know we don't have to make interpinic in the latest tag CLM. My simulation with CLM4_5_66 was terminated when I tried to use the same domain file and surfdata which can be read in the CLM4_5_10 or lower. Should I regenerate domain file and surfdata in CLM4_5_66?

Thanks a lot.

 

 

ratebsamy@...

I tried to install interpinic program to interpolate global CN restart file, but an error occured during compilation

 

To

Message body

Hello Dr.Liliu, I solved the problem i mentioned but another problem occured: 

gmake: execvp: /usr/local/netcdf-4.1.3/lib: Permission denied
/bin/gfortran -o ../interpinic fmain.o interpinic.o shr_kind_mod.o shr_sys_mod.o shr_const_mod.o shr_log_mod.o shr_infnan_mod.o shr_isnan.o 
fmain.o: In function `MAIN__':
fmain.F90:(.text+0x3de): undefined reference to `iargc_'
interpinic.o: In function `__interpinic_MOD_handle_error':
interpinic.F90:(.text+0xdf): undefined reference to `nf_strerror_'
interpinic.o: In function `__interpinic_MOD_check_ret':
interpinic.F90:(.text+0x1dc): undefined reference to `nf_strerror_'
interpinic.o: In function `__interpinic_MOD_addglobal':
interpinic.F90:(.text+0x520): undefined reference to `nf_redef_'
interpinic.F90:(.text+0x61c): undefined reference to `nf_inq_attid_'
interpinic.F90:(.text+0x652): undefined reference to `nf_inq_attlen_'
interpinic.F90:(.text+0x6a5): undefined reference to `nf_get_att_text_'
interpinic.F90:(.text+0xd26): undefined reference to `nf_put_att_text_'
interpinic.F90:(.text+0xdf5): undefined reference to `nf_put_att_text_'
interpinic.F90:(.text+0xe64): undefined reference to `nf_put_att_text_'
interpinic.F90:(.text+0xf85): undefined reference to `nf_put_att_text_'
interpinic.F90:(.text+0x1079): undefined reference to `nf_put_att_text_'
interpinic.F90:(.text+0x10ac): undefined reference to `nf_enddef_'
interpinic.o: In function `__interpinic_MOD_interp_sl_int':
interpinic.F90:(.text+0x18a0): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x18eb): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x1ada): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x1b25): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x1cff): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x1d4a): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x1d7f): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x1dca): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x2147): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x2192): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x21c7): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x2212): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x2247): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x2292): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x22c9): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x2311): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x2348): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x2390): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x2737): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x277f): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'
interpinic.o: In function `__interpinic_MOD_interp_sl_real':
interpinic.F90:(.text+0x3518): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x3563): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x35b4): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x35ff): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x3644): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x368f): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x36c4): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x370f): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x3760): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x37ab): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x37e2): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x382a): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x3861): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x38a9): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x3db5): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x3dfd): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
interpinic.o: In function `__interpinic_MOD_interp_ml_real':
interpinic.F90:(.text+0x4797): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x47e2): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x4830): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x487b): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x48d3): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x4939): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
interpinic.F90:(.text+0x4991): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x49fa): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
interpinic.F90:(.text+0x51f5): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x5240): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
interpinic.o: In function `__interpinic_MOD_findmindistldus':
interpinic.F90:(.text+0x648c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x64d7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x650c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x6557): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x658c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x65d7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x660c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x6657): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x668c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x66d7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x670c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x6757): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x678c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x67d7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x680c): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x6857): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.o: In function `__interpinic_MOD_findmindistcols':
interpinic.F90:(.text+0x878d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x87d8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x880d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8858): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x888d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x88d8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x890d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8958): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x898d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x89d8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x8a0d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8a58): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x8a8d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8ad8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x8b0d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8b58): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0x8b8d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8bd8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0x8c0d): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x8c58): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.o: In function `__interpinic_MOD_findmindistpfts':
interpinic.F90:(.text+0xb018): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb063): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0xb098): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb0e3): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0xb118): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb163): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0xb198): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb1e3): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0xb218): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb263): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0xb298): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb2e3): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0xb318): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb363): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.F90:(.text+0xb398): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb3e3): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0xb418): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb463): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'
interpinic.F90:(.text+0xb498): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xb4e3): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'
interpinic.o: In function `__interpinic_MOD_interp_filei':
interpinic.F90:(.text+0xc3f0): undefined reference to `__netcdf_MOD_nf90_open'
interpinic.F90:(.text+0xc450): undefined reference to `__netcdf_MOD_nf90_open'
interpinic.F90:(.text+0xc47d): undefined reference to `nf_inq_format_'
interpinic.F90:(.text+0xc523): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc558): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc587): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc5bc): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc696): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc6cb): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc6fa): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc72f): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc809): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc83e): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc86d): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc8a2): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc97c): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xc9b1): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xc9e0): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xca17): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xcb73): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xcba7): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xcbd6): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xcc0d): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xcdda): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xce0e): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xce3d): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xce74): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd041): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd076): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd0a5): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd0dc): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd238): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd26d): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd29c): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd2d1): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd429): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd45e): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd48d): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd4c2): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xd61a): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xd65b): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xdadd): undefined reference to `nf_inq_varid_'
interpinic.F90:(.text+0xdb0b): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xdb42): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xdc07): undefined reference to `__netcdf_MOD_nf90_inq_dimid'
interpinic.F90:(.text+0xdc3e): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'
interpinic.F90:(.text+0xdd14): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xe373): undefined reference to `__netcdf_MOD_nf90_inquire'
interpinic.F90:(.text+0xe394): undefined reference to `__netcdf_MOD_nf90_close'
interpinic.F90:(.text+0xe3f4): undefined reference to `__netcdf_MOD_nf90_open'
interpinic.F90:(.text+0xe4c7): undefined reference to `nf_inq_varname_'
interpinic.F90:(.text+0xecbc): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xee87): undefined reference to `__netcdf_MOD_nf90_inquire_variable'
interpinic.F90:(.text+0xef6b): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xef9f): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'
interpinic.F90:(.text+0xefd3): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xf1a9): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'
interpinic.F90:(.text+0xf5fb): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xf6a6): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
interpinic.F90:(.text+0xf6da): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xf9dc): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
interpinic.F90:(.text+0xfb23): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0xfc4b): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
interpinic.F90:(.text+0xfd64): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
interpinic.F90:(.text+0xff48): undefined reference to `__netcdf_MOD_nf90_inq_varid'
interpinic.F90:(.text+0x10070): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'
interpinic.F90:(.text+0x10190): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'
interpinic.F90:(.text+0x1078e): undefined reference to `__netcdf_MOD_nf90_close'
interpinic.F90:(.text+0x107af): undefined reference to `__netcdf_MOD_nf90_close'
collect2: error: ld returned 1 exit status
gmake: *** [../interpinic] Error 1

lhe2@...

Hi, 

I met the similar problem with you, specifically my alert information is as below,

shr_ncread_mod.F90:(.text+0x846): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_ncread_mod.F90:(.text+0x941): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x10eb): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x1232): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

shr_ncread_mod.F90:(.text+0x29a6): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

shr_ncread_mod.F90:(.text+0x29f8): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_dimsizename':

shr_ncread_mod.F90:(.text+0x4ff0): undefined reference to `__netcdf_MOD_nf90_inq_dimid'

shr_ncread_mod.F90:(.text+0x5031): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimsizes':

shr_ncread_mod.F90:(.text+0x51c7): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_ncread_mod.F90:(.text+0x521d): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x5370): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x5400): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimsizeid':

shr_ncread_mod.F90:(.text+0x556b): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_ncread_mod.F90:(.text+0x55d0): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x572b): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_ncread_mod.F90:(.text+0x5782): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_vardimnum':

shr_ncread_mod.F90:(.text+0x5991): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_ncread_mod.F90:(.text+0x59f1): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_ncread_mod.o): In function `__shr_ncread_mod_MOD_shr_ncread_varexists':

shr_ncread_mod.F90:(.text+0x5b76): undefined reference to `__netcdf_MOD_nf90_inq_varid'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_scam_mod.o): In function `__shr_scam_mod_MOD_shr_scam_getcloselatlonnc':

shr_scam_mod.F90:(.text+0x1889): undefined reference to `__netcdf_MOD_nf90_inquire'

shr_scam_mod.F90:(.text+0x18be): undefined reference to `__netcdf_MOD_nf90_inquire'

shr_scam_mod.F90:(.text+0x1a54): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_scam_mod.F90:(.text+0x1c6b): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

shr_scam_mod.F90:(.text+0x1e29): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

shr_scam_mod.F90:(.text+0x2132): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

shr_scam_mod.F90:(.text+0x236e): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_scam_mod.o): In function `__shr_scam_mod_MOD_shr_scam_checksurface':

shr_scam_mod.F90:(.text+0x2cb0): undefined reference to `__netcdf_MOD_nf90_open'

shr_scam_mod.F90:(.text+0x2e72): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_scam_mod.F90:(.text+0x305c): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_stream_mod.o): In function `__shr_stream_mod_MOD_shr_stream_readtcoord':

shr_stream_mod.F90:(.text+0x5ae5): undefined reference to `__netcdf_MOD_nf90_open'

shr_stream_mod.F90:(.text+0x5bcc): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_stream_mod.F90:(.text+0x5c2b): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_stream_mod.F90:(.text+0x5d89): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

shr_stream_mod.F90:(.text+0x5dda): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

shr_stream_mod.F90:(.text+0x60bd): undefined reference to `__netcdf_MOD_nf90_get_att_text'

shr_stream_mod.F90:(.text+0x6106): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

shr_stream_mod.F90:(.text+0x613c): undefined reference to `__netcdf_MOD_nf90_get_att_text'

shr_stream_mod.F90:(.text+0x646e): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

shr_stream_mod.F90:(.text+0x6497): undefined reference to `__netcdf_MOD_nf90_close'

/storage/lhe/output/try_cesm/lib//libcsm_share.a(shr_stream_mod.o): In function `__shr_stream_mod_MOD_shr_stream_getcalendar':

shr_stream_mod.F90:(.text+0x76d5): undefined reference to `__netcdf_MOD_nf90_open'

shr_stream_mod.F90:(.text+0x77be): undefined reference to `__netcdf_MOD_nf90_inq_varid'

shr_stream_mod.F90:(.text+0x7804): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

shr_stream_mod.F90:(.text+0x7837): undefined reference to `__netcdf_MOD_nf90_get_att_text'

shr_stream_mod.F90:(.text+0x7997): undefined reference to `__netcdf_MOD_nf90_close'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_copy_att':

nf_mod.F90:(.text+0x3c): undefined reference to `__netcdf_MOD_nf90_copy_att'

nf_mod.F90:(.text+0x4f): undefined reference to `__netcdf_MOD_nf90_copy_att'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_def_var_md':

nf_mod.F90:(.text+0x33b): undefined reference to `__netcdf_MOD_nf90_def_var_scalar'

nf_mod.F90:(.text+0x3c5): undefined reference to `__netcdf_MOD_nf90_def_var_manydims'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_def_dim':

nf_mod.F90:(.text+0x84d): undefined reference to `__netcdf_MOD_nf90_def_dim'

nf_mod.F90:(.text+0x88c): undefined reference to `__netcdf_MOD_nf90_def_dim'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_redef':

nf_mod.F90:(.text+0xa84): undefined reference to `__netcdf_MOD_nf90_redef'

nf_mod.F90:(.text+0xa99): undefined reference to `__netcdf_MOD_nf90_redef'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_enddef':

nf_mod.F90:(.text+0xba8): undefined reference to `__netcdf_MOD_nf90_enddef'

nf_mod.F90:(.text+0xbcc): undefined reference to `__netcdf_MOD_nf90_enddef'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_inq_dimlen':

nf_mod.F90:(.text+0xda3): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

nf_mod.F90:(.text+0xdcf): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_inq_dimname':

nf_mod.F90:(.text+0x1030): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

nf_mod.F90:(.text+0x1067): undefined reference to `__netcdf_MOD_nf90_inquire_dimension'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_inq_dimid':

nf_mod.F90:(.text+0x133c): undefined reference to `__netcdf_MOD_nf90_inq_dimid'

nf_mod.F90:(.text+0x1372): undefined reference to `__netcdf_MOD_nf90_inq_dimid'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_varnatts_vid':

nf_mod.F90:(.text+0x1719): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

nf_mod.F90:(.text+0x1768): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_vardimid_vid':

nf_mod.F90:(.text+0x1a44): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

nf_mod.F90:(.text+0x1acb): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_vartype_vid':

nf_mod.F90:(.text+0x1e14): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o):nf_mod.F90:(.text+0x1e61): more undefined references to `__netcdf_MOD_nf90_inquire_variable' follow

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_varid_vid':

nf_mod.F90:(.text+0x2877): undefined reference to `__netcdf_MOD_nf90_inq_varid'

nf_mod.F90:(.text+0x28a2): undefined reference to `__netcdf_MOD_nf90_inq_varid'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_attname_vid':

nf_mod.F90:(.text+0x2ae5): undefined reference to `__netcdf_MOD_nf90_inq_attname'

nf_mod.F90:(.text+0x2b1c): undefined reference to `__netcdf_MOD_nf90_inq_attname'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_attlen_vid':

nf_mod.F90:(.text+0x2ee0): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

nf_mod.F90:(.text+0x2f28): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_inq_att_vid':

nf_mod.F90:(.text+0x31d4): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

nf_mod.F90:(.text+0x321c): undefined reference to `__netcdf_MOD_nf90_inquire_attribute'

/storage/lhe/output/try_cesm/lib//libpio.a(nf_mod.o): In function `__nf_mod_MOD_pio_inquire':

nf_mod.F90:(.text+0x34d8): undefined reference to `__netcdf_MOD_nf90_inquire'

nf_mod.F90:(.text+0x3508): undefined reference to `__netcdf_MOD_nf90_inquire'

/storage/lhe/output/try_cesm/lib//libpio.a(pio_utils.o): In function `__pio_utils_MOD_check_netcdf':

pio_utils.F90:(.text+0x191): undefined reference to `__netcdf_MOD_nf90_strerror'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_1d_double':

pionfatt_mod.F90:(.text+0x256): undefined reference to `__netcdf_MOD_nf90_get_att_eightbytereal'

pionfatt_mod.F90:(.text+0x351): undefined reference to `__netcdf_MOD_nf90_get_att_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_1d_int':

pionfatt_mod.F90:(.text+0x6b0): undefined reference to `__netcdf_MOD_nf90_get_att_fourbyteint'

pionfatt_mod.F90:(.text+0x7ab): undefined reference to `__netcdf_MOD_nf90_get_att_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_1d_real':

pionfatt_mod.F90:(.text+0xb0a): undefined reference to `__netcdf_MOD_nf90_get_att_fourbytereal'

pionfatt_mod.F90:(.text+0xc05): undefined reference to `__netcdf_MOD_nf90_get_att_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_int':

pionfatt_mod.F90:(.text+0xeb7): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbyteint'

pionfatt_mod.F90:(.text+0xf2e): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_double':

pionfatt_mod.F90:(.text+0x1181): undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'

pionfatt_mod.F90:(.text+0x11f8): undefined reference to `__netcdf_MOD_nf90_get_att_one_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_real':

pionfatt_mod.F90:(.text+0x144b): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbytereal'

pionfatt_mod.F90:(.text+0x14c2): undefined reference to `__netcdf_MOD_nf90_get_att_one_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_get_att_text':

pionfatt_mod.F90:(.text+0x175b): undefined reference to `__netcdf_MOD_nf90_get_att_text'

pionfatt_mod.F90:(.text+0x17df): undefined reference to `__netcdf_MOD_nf90_get_att_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_1d_int':

pionfatt_mod.F90:(.text+0x1de1): undefined reference to `__netcdf_MOD_nf90_put_att_fourbyteint'

pionfatt_mod.F90:(.text+0x1e3c): undefined reference to `__netcdf_MOD_nf90_put_att_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_1d_double':

pionfatt_mod.F90:(.text+0x22fc): undefined reference to `__netcdf_MOD_nf90_put_att_eightbytereal'

pionfatt_mod.F90:(.text+0x2357): undefined reference to `__netcdf_MOD_nf90_put_att_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_1d_real':

pionfatt_mod.F90:(.text+0x2817): undefined reference to `__netcdf_MOD_nf90_put_att_fourbytereal'

pionfatt_mod.F90:(.text+0x2872): undefined reference to `__netcdf_MOD_nf90_put_att_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_int':

pionfatt_mod.F90:(.text+0x2b09): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'

pionfatt_mod.F90:(.text+0x2b2a): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_double':

pionfatt_mod.F90:(.text+0x2d64): undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'

pionfatt_mod.F90:(.text+0x2d85): undefined reference to `__netcdf_MOD_nf90_put_att_one_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_real':

pionfatt_mod.F90:(.text+0x2fbf): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'

pionfatt_mod.F90:(.text+0x2fe0): undefined reference to `__netcdf_MOD_nf90_put_att_one_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfatt_mod.o): In function `__pionfatt_mod_MOD_put_att_text':

pionfatt_mod.F90:(.text+0x3261): undefined reference to `__netcdf_MOD_nf90_put_att_text'

pionfatt_mod.F90:(.text+0x3284): undefined reference to `__netcdf_MOD_nf90_put_att_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_5d_double':

pionfput_mod.F90:(.text+0xb66): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'

pionfput_mod.F90:(.text+0xd9d): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_4d_double':

pionfput_mod.F90:(.text+0x1d24): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'

pionfput_mod.F90:(.text+0x1f35): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_3d_double':

pionfput_mod.F90:(.text+0x2dc4): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'

pionfput_mod.F90:(.text+0x2faf): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_2d_double':

pionfput_mod.F90:(.text+0x3d24): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'

pionfput_mod.F90:(.text+0x3ede): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_1d_double':

pionfput_mod.F90:(.text+0x4b17): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

pionfput_mod.F90:(.text+0x4ca2): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_5d_real':

pionfput_mod.F90:(.text+0x5c1c): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'

pionfput_mod.F90:(.text+0x5e53): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_4d_real':

pionfput_mod.F90:(.text+0x6dda): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'

pionfput_mod.F90:(.text+0x6feb): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_3d_real':

pionfput_mod.F90:(.text+0x7e7a): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'

pionfput_mod.F90:(.text+0x8065): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_2d_real':

pionfput_mod.F90:(.text+0x8dda): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'

pionfput_mod.F90:(.text+0x8f94): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_1d_real':

pionfput_mod.F90:(.text+0x9bcd): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

pionfput_mod.F90:(.text+0x9d58): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_5d_int':

pionfput_mod.F90:(.text+0xacd2): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'

pionfput_mod.F90:(.text+0xaf09): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_4d_int':

pionfput_mod.F90:(.text+0xbe90): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'

pionfput_mod.F90:(.text+0xc0a1): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_3d_int':

pionfput_mod.F90:(.text+0xcf30): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'

pionfput_mod.F90:(.text+0xd11b): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_2d_int':

pionfput_mod.F90:(.text+0xde90): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'

pionfput_mod.F90:(.text+0xe04a): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_1d_int':

pionfput_mod.F90:(.text+0xec83): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

pionfput_mod.F90:(.text+0xee0e): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_5d_text':

pionfput_mod.F90:(.text+0xfdf0): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'

pionfput_mod.F90:(.text+0x10035): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_4d_text':

pionfput_mod.F90:(.text+0x1102e): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'

pionfput_mod.F90:(.text+0x1124d): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_3d_text':

pionfput_mod.F90:(.text+0x1214b): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'

pionfput_mod.F90:(.text+0x1233e): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_2d_text':

pionfput_mod.F90:(.text+0x13128): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'

pionfput_mod.F90:(.text+0x132f8): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_vara_1d_text':

pionfput_mod.F90:(.text+0x13faa): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'

pionfput_mod.F90:(.text+0x1413f): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_0d_double':

pionfput_mod.F90:(.text+0x146eb): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'

pionfput_mod.F90:(.text+0x14717): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_0d_real':

pionfput_mod.F90:(.text+0x149be): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'

pionfput_mod.F90:(.text+0x149ea): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_0d_int':

pionfput_mod.F90:(.text+0x14c91): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'

pionfput_mod.F90:(.text+0x14cbd): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_5d_double':

pionfput_mod.F90:(.text+0x15566): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'

pionfput_mod.F90:(.text+0x15672): undefined reference to `__netcdf_MOD_nf90_put_var_5d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_4d_double':

pionfput_mod.F90:(.text+0x15f93): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'

pionfput_mod.F90:(.text+0x16079): undefined reference to `__netcdf_MOD_nf90_put_var_4d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_3d_double':

pionfput_mod.F90:(.text+0x1688c): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'

pionfput_mod.F90:(.text+0x1694c): undefined reference to `__netcdf_MOD_nf90_put_var_3d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_2d_double':

pionfput_mod.F90:(.text+0x1702c): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'

pionfput_mod.F90:(.text+0x170d1): undefined reference to `__netcdf_MOD_nf90_put_var_2d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_1d_double':

pionfput_mod.F90:(.text+0x17639): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

pionfput_mod.F90:(.text+0x176b7): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_5d_real':

pionfput_mod.F90:(.text+0x17fed): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'

pionfput_mod.F90:(.text+0x180f9): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_4d_real':

pionfput_mod.F90:(.text+0x18a1a): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'

pionfput_mod.F90:(.text+0x18b00): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_3d_real':

pionfput_mod.F90:(.text+0x19313): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'

pionfput_mod.F90:(.text+0x193d3): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_2d_real':

pionfput_mod.F90:(.text+0x19ab3): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'

pionfput_mod.F90:(.text+0x19b58): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_1d_real':

pionfput_mod.F90:(.text+0x1a0c0): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

pionfput_mod.F90:(.text+0x1a13e): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_5d_int':

pionfput_mod.F90:(.text+0x1aa74): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'

pionfput_mod.F90:(.text+0x1ab80): undefined reference to `__netcdf_MOD_nf90_put_var_5d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_4d_int':

pionfput_mod.F90:(.text+0x1b4a1): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'

pionfput_mod.F90:(.text+0x1b587): undefined reference to `__netcdf_MOD_nf90_put_var_4d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_3d_int':

pionfput_mod.F90:(.text+0x1bd9a): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'

pionfput_mod.F90:(.text+0x1be5a): undefined reference to `__netcdf_MOD_nf90_put_var_3d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_2d_int':

pionfput_mod.F90:(.text+0x1c53a): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'

pionfput_mod.F90:(.text+0x1c5df): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_1d_int':

pionfput_mod.F90:(.text+0x1cb47): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

pionfput_mod.F90:(.text+0x1cbc5): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_5d_text':

pionfput_mod.F90:(.text+0x1d57a): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'

pionfput_mod.F90:(.text+0x1d68f): undefined reference to `__netcdf_MOD_nf90_put_var_5d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_4d_text':

pionfput_mod.F90:(.text+0x1e041): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'

pionfput_mod.F90:(.text+0x1e130): undefined reference to `__netcdf_MOD_nf90_put_var_4d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_3d_text':

pionfput_mod.F90:(.text+0x1e9d0): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'

pionfput_mod.F90:(.text+0x1ea99): undefined reference to `__netcdf_MOD_nf90_put_var_3d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_2d_text':

pionfput_mod.F90:(.text+0x1f20f): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'

pionfput_mod.F90:(.text+0x1f2be): undefined reference to `__netcdf_MOD_nf90_put_var_2d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_1d_text':

pionfput_mod.F90:(.text+0x1f8a8): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'

pionfput_mod.F90:(.text+0x1f930): undefined reference to `__netcdf_MOD_nf90_put_var_1d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var_0d_text':

pionfput_mod.F90:(.text+0x1fcf6): undefined reference to `nf_put_vars_text_'

pionfput_mod.F90:(.text+0x1fd34): undefined reference to `nf_put_vars_text_'

pionfput_mod.F90:(.text+0x1fd80): undefined reference to `nf_put_vars_text_'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var1_double':

pionfput_mod.F90:(.text+0x2032a): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'

pionfput_mod.F90:(.text+0x20383): undefined reference to `__netcdf_MOD_nf90_put_var_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var1_real':

pionfput_mod.F90:(.text+0x209df): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'

pionfput_mod.F90:(.text+0x20a38): undefined reference to `__netcdf_MOD_nf90_put_var_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var1_int':

pionfput_mod.F90:(.text+0x21094): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'

pionfput_mod.F90:(.text+0x210ed): undefined reference to `__netcdf_MOD_nf90_put_var_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfput_mod.o): In function `__pionfput_mod_MOD_put_var1_text':

pionfput_mod.F90:(.text+0x217ce): undefined reference to `__netcdf_MOD_nf90_put_var_text'

pionfput_mod.F90:(.text+0x2183f): undefined reference to `__netcdf_MOD_nf90_put_var_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_5d_int':

pionfget_mod.F90:(.text+0x4c3): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'

pionfget_mod.F90:(.text+0x5d4): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_4d_int':

pionfget_mod.F90:(.text+0xe55): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'

pionfget_mod.F90:(.text+0xf37): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_3d_int':

pionfget_mod.F90:(.text+0x168d): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'

pionfget_mod.F90:(.text+0x1743): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_2d_int':

pionfget_mod.F90:(.text+0x1d58): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'

pionfget_mod.F90:(.text+0x1de9): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_1d_int':

pionfget_mod.F90:(.text+0x22ae): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

pionfget_mod.F90:(.text+0x2316): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_0d_int':

pionfget_mod.F90:(.text+0x2692): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'

pionfget_mod.F90:(.text+0x26b7): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_5d_double':

pionfget_mod.F90:(.text+0x2c93): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'

pionfget_mod.F90:(.text+0x2da4): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_4d_double':

pionfget_mod.F90:(.text+0x3625): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'

pionfget_mod.F90:(.text+0x3707): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_3d_double':

pionfget_mod.F90:(.text+0x3e5d): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'

pionfget_mod.F90:(.text+0x3f13): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_2d_double':

pionfget_mod.F90:(.text+0x4528): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

pionfget_mod.F90:(.text+0x45b9): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_1d_double':

pionfget_mod.F90:(.text+0x4a7e): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

pionfget_mod.F90:(.text+0x4ae6): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_0d_double':

pionfget_mod.F90:(.text+0x4e62): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'

pionfget_mod.F90:(.text+0x4e87): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_5d_real':

pionfget_mod.F90:(.text+0x5463): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'

pionfget_mod.F90:(.text+0x5574): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_4d_real':

pionfget_mod.F90:(.text+0x5df5): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'

pionfget_mod.F90:(.text+0x5ed7): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_3d_real':

pionfget_mod.F90:(.text+0x662d): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'

pionfget_mod.F90:(.text+0x66e3): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_2d_real':

pionfget_mod.F90:(.text+0x6cf8): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'

pionfget_mod.F90:(.text+0x6d89): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_1d_real':

pionfget_mod.F90:(.text+0x724e): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

pionfget_mod.F90:(.text+0x72b6): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_0d_real':

pionfget_mod.F90:(.text+0x7632): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'

pionfget_mod.F90:(.text+0x7657): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_5d_text':

pionfget_mod.F90:(.text+0x7e9f): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'

pionfget_mod.F90:(.text+0x7fd5): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_4d_text':

pionfget_mod.F90:(.text+0x8ab2): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'

pionfget_mod.F90:(.text+0x8bbf): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_3d_text':

pionfget_mod.F90:(.text+0x9507): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'

pionfget_mod.F90:(.text+0x95e8): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_2d_text':

pionfget_mod.F90:(.text+0x9d83): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'

pionfget_mod.F90:(.text+0x9e3b): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_1d_text':

pionfget_mod.F90:(.text+0xa433): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'

pionfget_mod.F90:(.text+0xa4a7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var_0d_text':

pionfget_mod.F90:(.text+0xa8c2): undefined reference to `__netcdf_MOD_nf90_get_var_text'

pionfget_mod.F90:(.text+0xa8fb): undefined reference to `__netcdf_MOD_nf90_get_var_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_5d_int':

pionfget_mod.F90:(.text+0xb180): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'

pionfget_mod.F90:(.text+0xb347): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_4d_int':

pionfget_mod.F90:(.text+0xbf5d): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'

pionfget_mod.F90:(.text+0xc0f8): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_3d_int':

pionfget_mod.F90:(.text+0xcc1c): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'

pionfget_mod.F90:(.text+0xcd8b): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_2d_int':

pionfget_mod.F90:(.text+0xd79b): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'

pionfget_mod.F90:(.text+0xd8e4): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_1d_int':

pionfget_mod.F90:(.text+0xe1eb): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

pionfget_mod.F90:(.text+0xe305): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_5d_double':

pionfget_mod.F90:(.text+0xeda4): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'

pionfget_mod.F90:(.text+0xef6b): undefined reference to `__netcdf_MOD_nf90_get_var_5d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_4d_double':

pionfget_mod.F90:(.text+0xfb81): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'

pionfget_mod.F90:(.text+0xfd1c): undefined reference to `__netcdf_MOD_nf90_get_var_4d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_3d_double':

pionfget_mod.F90:(.text+0x10840): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'

pionfget_mod.F90:(.text+0x109af): undefined reference to `__netcdf_MOD_nf90_get_var_3d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_2d_double':

pionfget_mod.F90:(.text+0x113bf): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

pionfget_mod.F90:(.text+0x11508): undefined reference to `__netcdf_MOD_nf90_get_var_2d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_1d_double':

pionfget_mod.F90:(.text+0x11e0f): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

pionfget_mod.F90:(.text+0x11f29): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_5d_real':

pionfget_mod.F90:(.text+0x129c8): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'

pionfget_mod.F90:(.text+0x12b8f): undefined reference to `__netcdf_MOD_nf90_get_var_5d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_4d_real':

pionfget_mod.F90:(.text+0x137a5): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'

pionfget_mod.F90:(.text+0x13940): undefined reference to `__netcdf_MOD_nf90_get_var_4d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_3d_real':

pionfget_mod.F90:(.text+0x14464): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'

pionfget_mod.F90:(.text+0x145d3): undefined reference to `__netcdf_MOD_nf90_get_var_3d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_2d_real':

pionfget_mod.F90:(.text+0x14fe3): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'

pionfget_mod.F90:(.text+0x1512c): undefined reference to `__netcdf_MOD_nf90_get_var_2d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_1d_real':

pionfget_mod.F90:(.text+0x15a33): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

pionfget_mod.F90:(.text+0x15b4d): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_5d_text':

pionfget_mod.F90:(.text+0x16628): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'

pionfget_mod.F90:(.text+0x167f8): undefined reference to `__netcdf_MOD_nf90_get_var_5d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_4d_text':

pionfget_mod.F90:(.text+0x17481): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'

pionfget_mod.F90:(.text+0x17625): undefined reference to `__netcdf_MOD_nf90_get_var_4d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_3d_text':

pionfget_mod.F90:(.text+0x181bc): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'

pionfget_mod.F90:(.text+0x18334): undefined reference to `__netcdf_MOD_nf90_get_var_3d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_2d_text':

pionfget_mod.F90:(.text+0x18dba): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'

pionfget_mod.F90:(.text+0x18f0c): undefined reference to `__netcdf_MOD_nf90_get_var_2d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_vara_1d_text':

pionfget_mod.F90:(.text+0x1988a): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'

pionfget_mod.F90:(.text+0x199ad): undefined reference to `__netcdf_MOD_nf90_get_var_1d_text'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var1_int':

pionfget_mod.F90:(.text+0x1a0a0): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'

pionfget_mod.F90:(.text+0x1a0ff): undefined reference to `__netcdf_MOD_nf90_get_var_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var1_double':

pionfget_mod.F90:(.text+0x1a646): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'

pionfget_mod.F90:(.text+0x1a6a5): undefined reference to `__netcdf_MOD_nf90_get_var_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var1_real':

pionfget_mod.F90:(.text+0x1abec): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'

pionfget_mod.F90:(.text+0x1ac4b): undefined reference to `__netcdf_MOD_nf90_get_var_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfget_mod.o): In function `__pionfget_mod_MOD_get_var1_text':

pionfget_mod.F90:(.text+0x1b206): undefined reference to `__netcdf_MOD_nf90_get_var_text'

pionfget_mod.F90:(.text+0x1b27e): undefined reference to `__netcdf_MOD_nf90_get_var_text'

/storage/lhe/output/try_cesm/lib//libpio.a(ionf_mod.o): In function `__ionf_mod_MOD_sync_nf':

ionf_mod.F90:(.text+0xb7): undefined reference to `__netcdf_MOD_nf90_sync'

/storage/lhe/output/try_cesm/lib//libpio.a(ionf_mod.o): In function `__ionf_mod_MOD_close_nf':

ionf_mod.F90:(.text+0x1d1): undefined reference to `__netcdf_MOD_nf90_sync'

ionf_mod.F90:(.text+0x1e4): undefined reference to `__netcdf_MOD_nf90_close'

/storage/lhe/output/try_cesm/lib//libpio.a(ionf_mod.o): In function `__ionf_mod_MOD_open_nf':

ionf_mod.F90:(.text+0x345): undefined reference to `__netcdf_MOD_nf90_open'

ionf_mod.F90:(.text+0x400): undefined reference to `__netcdf_MOD_nf90_set_fill'

/storage/lhe/output/try_cesm/lib//libpio.a(ionf_mod.o): In function `__ionf_mod_MOD_create_nf':

ionf_mod.F90:(.text+0x548): undefined reference to `__netcdf_MOD_nf90_create'

ionf_mod.F90:(.text+0x612): undefined reference to `__netcdf_MOD_nf90_set_fill'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfread_mod.o): In function `__pionfread_mod_MOD_read_nfdarray_int':

pionfread_mod.F90:(.text+0x2a7): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

pionfread_mod.F90:(.text+0xbfd): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

pionfread_mod.F90:(.text+0x107e): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfread_mod.o): In function `__pionfread_mod_MOD_read_nfdarray_double':

pionfread_mod.F90:(.text+0x1421): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

pionfread_mod.F90:(.text+0x1d77): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

pionfread_mod.F90:(.text+0x21f8): undefined reference to `__netcdf_MOD_nf90_get_var_1d_eightbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfread_mod.o): In function `__pionfread_mod_MOD_read_nfdarray_real':

pionfread_mod.F90:(.text+0x259b): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

pionfread_mod.F90:(.text+0x2ef1): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

pionfread_mod.F90:(.text+0x3372): undefined reference to `__netcdf_MOD_nf90_get_var_1d_fourbytereal'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfwrite_mod.o): In function `__pionfwrite_mod_MOD_write_nfdarray_double':

pionfwrite_mod.F90:(.text+0x28d): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

pionfwrite_mod.F90:(.text+0x4fd): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

pionfwrite_mod.F90:(.text+0xa73): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

pionfwrite_mod.F90:(.text+0x1052): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'

pionfwrite_mod.F90:(.text+0x1578): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

pionfwrite_mod.F90:(.text+0x17e0): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

pionfwrite_mod.F90:(.text+0x1d56): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

pionfwrite_mod.F90:(.text+0x2335): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbyteint'

/storage/lhe/output/try_cesm/lib//libpio.a(pionfwrite_mod.o): In function `__pionfwrite_mod_MOD_write_nfdarray_real':

pionfwrite_mod.F90:(.text+0x285b): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

pionfwrite_mod.F90:(.text+0x2acb): undefined reference to `__netcdf_MOD_nf90_inquire_variable'

pionfwrite_mod.F90:(.text+0x3041): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

pionfwrite_mod.F90:(.text+0x3620): undefined reference to `__netcdf_MOD_nf90_put_var_1d_fourbytereal'

collect2: error: ld returned 1 exit status

 

Ecological modeling

anura003@...

xiyanxu@

 

This is an old post, but still giving it a shot - do you remember what you did to get rid of this error ("Negative conc. in ch4tran")? I am also running a regional simulation of CLM4.5BGC, with my own forcing data, and getting the same error after the model runs for about 80 years.

 

Any help would be appreciated.

 

Thanks

Harsh

zhaohgoodluck@...

I also met with this problem for single point data simulation, is also due to the resolution problem? Thanks a lot. 

H ZHAO

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