Main menu

Navigation

Issue running CESM1.2.2.1 with CARMA on Cheyenne

2 posts / 0 new
Last post
christopher.mal...
Issue running CESM1.2.2.1 with CARMA on Cheyenne

Good morning,

    I have just switched over to Cheyenne from Yellowstone and have downloaded CESM1.2.2.1 instead of porting over the older version of CESM I was using. I have successfully run test cases using just CAM5 configurations (F_2000_CAM5) on Cheyenne with CESM1.2.2.1. However, when I turn on the CARMA module I can successfully build a case, but each run is immediately aborted upon starting. I am not exactly sure why this is occuring, or if this is a Cheyenne issue or a CESM1.2.2.1 issue. Any insight would be much appreciated. I included the error message from my cesm.log file below. There is also an error appearing in my atm.log file relating to an "invalid NetCDF dimension ID or name" when attempting to create the initial carma reference temperature file, but I do not believe that is the issue here.

Thanks,

Chris Maloney

 

1: Opened existing file 

1: /glade/p/cesmdata/cseg/inputdata/atm/cam/physprops/seasalt4_rrtmg_c080918.nc

1:      196608

0:(shr_sys_abort) ERROR: HANDLE_ERROR

0:(shr_sys_abort) WARNING: calling shr_mpi_abort() and stopping

0:MPT ERROR: Rank 0(g:0) is aborting with error code 1001.

0:      Process ID: 28079, Host: r2i3n1, Program: /glade2/scratch2/cmaloney/CARMA_Test_12_28_17/bld/cesm.exe

0:      MPT Version: SGI MPT 2.15  09/03/16 04:15:54

0:

0:MPT: --------stack traceback-------

0:MPT: Attaching to program: /proc/28079/exe, process 28079

0:MPT: Try: zypper install -C "debuginfo(build-id)=3d290be00d48b823d3b71df2249e80d881bc473d"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=5409c48fdb15e90649c1407e444fbe31d6dc8ec1"

0:MPT: (no debugging symbols found)...done.

0:MPT: [Thread debugging using libthread_db enabled]

0:MPT: Using host libthread_db library "/glade/u/apps/ch/os/lib64/libthread_db.so.1".

0:MPT: Try: zypper install -C "debuginfo(build-id)=e97cfdb062d6f0c41073f2109a7605d0ae991c03"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=f43d7754940a14ffe3d9bd8fc9472ffbbfead544"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=0ea764119690f32c98faae9a63a73f35ed8b1099"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=15916519d9dbaea26ec88427460b4cedb9c0a6ab"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=79264652a62453da222372a430cd9351d4bbcbde"

0:MPT: (no debugging symbols found)...done.

0:MPT: Try: zypper install -C "debuginfo(build-id)=68682e9ac223d269cbecb94315fcec5e16b32bfb"

0:MPT: (no debugging symbols found)...done.

0:MPT: 0x00002aaaab7d641c in waitpid () from /glade/u/apps/ch/os/lib64/libpthread.so.0

0:MPT: Missing separate debuginfos, use: zypper install glibc-debuginfo-2.19-35.1.x86_64

0:MPT: (gdb) #0  0x00002aaaab7d641c in waitpid ()

0:MPT:    from /glade/u/apps/ch/os/lib64/libpthread.so.0

0:MPT: #1  0x00002aaaabefe79c in mpi_sgi_system (command=<optimized out>) at sig.c:98

0:MPT: #2  MPI_SGI_stacktraceback (header=<optimized out>) at sig.c:339

0:MPT: #3  0x00002aaaabe58fae in print_traceback (ecode=1001) at abort.c:227

0:MPT: #4  0x00002aaaabe591e1 in PMPI_Abort (comm=<optimized out>, errorcode=1001)

0:MPT:     at abort.c:66

0:MPT: #5  0x00002aaaabe5923a in pmpi_abort__ ()

0:MPT:    from /glade/u/apps/opt/mpt/2.15-sgi715a158/lib/libmpi.so

0:MPT: #6  0x0000000001a5d569 in shr_mpi_mod_mp_shr_mpi_abort_ ()

0:MPT: #7  0x0000000001aacd46 in shr_sys_mod_mp_shr_sys_abort_ ()

0:MPT: #8  0x0000000000de4187 in wrap_nf_mp_wrap_def_var_ ()

0:MPT: #9  0x0000000000e77474 in carma_intr_mp_carma_init_ ()

0:MPT: #10 0x000000000054d252 in physpkg_mp_phys_init_ ()

0:MPT: #11 0x000000000048e4be in cam_comp_mp_cam_init_ ()

0:MPT: #12 0x000000000048a627 in atm_comp_mct_mp_atm_init_mct_ ()

0:MPT: #13 0x0000000000428391 in ccsm_comp_mod_mp_ccsm_init_ ()

0:MPT: #14 0x000000000042a893 in MAIN__ ()

0:MPT: #15 0x000000000040861e in main ()

0:MPT: (gdb) A debugging session is active.

0:MPT:

0:MPT:  Inferior 1 [process 28079] will be detached.

0:MPT: 

0:MPT: Quit anyway? (y or n) [answered Y; input not from terminal]

0:MPT: Detaching from program: /proc/28079/exe, process 28079

0:

0:MPT: -----stack traceback ends-----

-1:MPT ERROR: MPI_COMM_WORLD rank 0 has terminated without calling MPI_Finalize()

 

-1:     aborting job

kezhoulumelody@...

Hi Christopher,

Did you have a solution for this problem? I have a similar error messeage for cice component.

Thanks!

Melody Lu

Log in or register to post comments

Who's new

  • bxz125@...
  • yixiaozhang@...
  • dongxia.yang@...
  • 2017301110179@...
  • zhangpengcheng@...