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XML parsing error during cesm_setup

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msafeeq@...
XML parsing error during cesm_setup

Hi Everyone

I am trying to build a new cases on my local machine (Mac Pro) following the instructions as described: http://www.cesm.ucar.edu/models/cesm1.0/cesm/cesm_doc_1_0_4/c2249.html

I ran the ./create_newcase successfully with -mach userdefined option. However, I keep getting this XML parsing error during ./cesm_setup run:

EnviroWorks:I4804 User$ ./cesm_setup
XML::Lite:Your XML document must begin with a root element.

I have checked the *.XML files and they all seems to begin and end with a root element.

 

I will appriciate if you can provide me any lead to fix the issue.

 

Thanks

~Safeeq

 

santos

On a new machine, CESM 1.0.6 will probably be a better starting point than CESM 1.0.4. I can't think of any obvious reason for this issue, though. Do you have any *extra* XML files in your case directory? (Or files with a similar name?) I know that scripts in some versions of the model were not very smart about picking up XML files, and tried to treat anything with "env" and "xml" in the name as a source of environment variables.

Sean Patrick Santos

CESM Software Engineering Group

msafeeq@...

Hi Sean

Thanks for your reply. Infact I am trying to setup the cesm1_2_2 but loosely following the old instructions. I do see some aditional files/scripts in the case directory with *xml* and *env* in the name (e.g. xmlchange,xmlquery,env_mach_specific). Any thoughts on how to fix the script?

Additionally, I only need the lnd component of the model and in particular the CLM. Is there a way I can build that separately?

 

Thanks in advance

*************************************
Mohammad (Safeeq) Safeeq
Assistant Research Scientist
Sierra Nevada Research Institute,
University of California-Merced
http://tinyurl.com/klqlyhe
Office: 209-228-2459 Cell: 541-740-7346
*************************************

jedwards

From the message it seems like one or more of your .xml files is corrupted.   One easy way to try to find it is to

open the files in emacs and use nxml mode, once you are in that mode emacs will tell you if the file is proper xml format and

where the problem is if it is not.

CESM Software Engineer

santos

"xmlchange,xmlquery,env_mach_specific"

None of these are a problem. It's more of an issue if you have something called "env_build.xml.backup" or something like that.

I agree that it sounds like there's some corruption here in one of the files.

Sean Patrick Santos

CESM Software Engineering Group

msafeeq@...

Thanks Sean and Jim

That was it; re-saving the xml files that i modified using xml editor (aquamacs) fixed the isse. However, now I am stuck to this error with ./cesm_build. Here is the cesm.bldlog:

 

Wed Jan 28 12:50:32 PST 2015 /Users/msafeeq/Case_Brazil/bld/cesm.bldlog.150128-125000
-------------------------------------------------------------------------
 Building a single executable version of CESM
-------------------------------------------------------------------------
cat: Srcfiles: No such file or directory
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkSrcfiles
cp -f /Users/msafeeq/Case_Brazil/bld/cesm/obj/Filepath /Users/msafeeq/Case_Brazil/bld/cesm/obj/Deppath
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkDepends  Deppath Srcfiles > /Users/msafeeq/Case_Brazil/bld/cesm/obj/Depends
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_diag_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_esmf.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/mrg_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_flux_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_hist_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_mctext_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_rest_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_domain_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_frac_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:208.52:

   type (ESMF_Clock), target, SAVE       :: EClock_a
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:207.52:

   type (ESMF_Clock), target, SAVE       :: EClock_d      ! driver clock
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:212.52:

   type (ESMF_Clock), target, SAVE       :: EClock_g
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:211.52:

   type (ESMF_Clock), target, SAVE       :: EClock_i
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:209.52:

   type (ESMF_Clock), target, SAVE       :: EClock_l
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:210.52:

   type (ESMF_Clock), target, SAVE       :: EClock_o
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:213.52:

   type (ESMF_Clock), target, SAVE       :: EClock_r
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:214.52:

   type (ESMF_Clock), target, SAVE       :: EClock_w
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:160.51:

   type(seq_map), SAVE :: mapper_Ca2x(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:172.51:

   type(seq_map), SAVE :: mapper_Cg2x(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:168.51:

   type(seq_map), SAVE :: mapper_Ci2x(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:162.51:

   type(seq_map), SAVE :: mapper_Cl2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:170.51:

   type(seq_map), SAVE :: mapper_Co2x(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:166.51:

   type(seq_map), SAVE :: mapper_Cr2x(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:164.51:

   type(seq_map), SAVE :: mapper_Cs2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:174.51:

   type(seq_map), SAVE :: mapper_Cw2x(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:161.51:

   type(seq_map), SAVE :: mapper_Cx2a(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:173.51:

   type(seq_map), SAVE :: mapper_Cx2g(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:169.51:

   type(seq_map), SAVE :: mapper_Cx2i(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:163.51:

   type(seq_map), SAVE :: mapper_Cx2l(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:171.51:

   type(seq_map), SAVE :: mapper_Cx2o(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:167.51:

   type(seq_map), SAVE :: mapper_Cx2r(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:165.51:

   type(seq_map), SAVE :: mapper_Cx2s(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:175.51:

   type(seq_map), SAVE :: mapper_Cx2w(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:183.37:

   type(seq_map), SAVE :: mapper_Fa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:179.37:

   type(seq_map), SAVE :: mapper_Fa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:188.37:

   type(seq_map), SAVE :: mapper_Fi2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:185.37:

   type(seq_map), SAVE :: mapper_Fl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:186.37:

   type(seq_map), SAVE :: mapper_Fl2r
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:181.37:

   type(seq_map), SAVE :: mapper_Fo2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:191.37:

   type(seq_map), SAVE :: mapper_Fr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:189.37:

   type(seq_map), SAVE :: mapper_Fr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:190.37:

   type(seq_map), SAVE :: mapper_Rr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:182.37:

   type(seq_map), SAVE :: mapper_Sa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:177.37:

   type(seq_map), SAVE :: mapper_Sa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:197.37:

   type(seq_map), SAVE :: mapper_Sa2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:195.38:

   type(seq_map), SAVE :: mapper_SFg2s
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:193.38:

   type(seq_map), SAVE :: mapper_SFi2o
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:194.38:

   type(seq_map), SAVE :: mapper_SFo2i
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:196.38:

   type(seq_map), SAVE :: mapper_SFs2g
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:187.37:

   type(seq_map), SAVE :: mapper_Si2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:199.37:

   type(seq_map), SAVE :: mapper_Si2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:184.37:

   type(seq_map), SAVE :: mapper_Sl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:180.37:

   type(seq_map), SAVE :: mapper_So2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:198.37:

   type(seq_map), SAVE :: mapper_So2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:192.37:

   type(seq_map), SAVE :: mapper_Sr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:200.37:

   type(seq_map), SAVE :: mapper_Sw2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:178.37:

   type(seq_map), SAVE :: mapper_Va2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:206.49:

   type (seq_timemgr_type), SAVE :: seq_SyncClock ! array of all clocks & alarm
                                                 1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_driver.F90
gfortran  -o /Users/msafeeq/Case_Brazil/bld/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/Users/msafeeq/Case_Brazil/bld/lib/ -latm  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lice  -L/Users/msafeeq/Case_Brazil/bld/lib/ -llnd  -L/Users/msafeeq/Case_Brazil/bld/lib/ -locn  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lrof  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lglc  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lwav -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/opt/local/lib -lnetcdff -L/opt/local/lib -Wl,-headerpad_max_install_names -lnetcdf -lnetcdf -L/opt/local/lib -lpnetcdf  /Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/mct/mpi-serial/libmpi-serial.a
Undefined symbols for architecture x86_64:
  "_MPI_Error_class", referenced from:
      _ncmpii_handle_error in libpnetcdf.a(error.o)
  "_MPI_File_close", referenced from:
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_delete", referenced from:
      _ncmpi_delete in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_get_info", referenced from:
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_File_open", referenced from:
      _ncmpii_check_mpifh in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
  "_MPI_File_read", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_at", referenced from:
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _hdr_fetch in libpnetcdf.a(header.o)
  "_MPI_File_read_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_File_set_view", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_sync", referenced from:
      _ncmpii_end_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_begin_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_sync in libpnetcdf.a(mpincio.o)
  "_MPI_File_write", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_at", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
  "_MPI_File_write_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_Get_address", referenced from:
      _ncmpii_abuf_free.isra.0 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _hdr_check_buffer in libpnetcdf.a(header.o)
      _hdr_get_NC_name in libpnetcdf.a(header.o)
      _hdr_get_NC_attrarray in libpnetcdf.a(header.o)
      _ncmpii_hdr_get_NC in libpnetcdf.a(header.o)
      ...
  "_MPI_Get_count", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
      ...
  "_MPI_Info_create", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
  "_MPI_Info_dup", referenced from:
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
  "_MPI_Info_free", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
      _ncmpiio_free in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_Info_get", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_striping in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_enddef in libpnetcdf.a(nc.o)
      _ncmpii__enddef in libpnetcdf.a(nc.o)
      _ncmpiio_extract_hints.part.0 in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
      ...
  "_MPI_Info_set", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_NC_enddef in libpnetcdf.a(nc.o)
  "_MPI_Pack_size", referenced from:
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_commit", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
      ...
  "_MPI_Type_contiguous", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_create_hindexed", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
  "_MPI_Type_create_struct", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_subarray", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_free", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      ...
  "_MPI_Type_get_contents", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_envelope", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_extent", referenced from:
      _ncmpii_subfile_getput_vars in libpnetcdf.a(subfile.o)
  "_MPI_Type_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_size", referenced from:
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_struct", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_vector", referenced from:
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/Makefile:625: recipe for target '/Users/msafeeq/Case_Brazil/bld/cesm.exe' failed
gmake: *** [/Users/msafeeq/Case_Brazil/bld/cesm.exe] Error 1

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