Error setting up a case on perlmutter

[yfang]

Hi,
Has anyone tried running on perlmutter? The config_machines.xml file seems to be outdated. Is there a new one somewhere?

Thanks,
Yilin

 

[nusbaume]

Hi Yilin,

You can find the latest version of config_machines.xml in the machines directory of the ccs_config_cesm repo, which can be found on Github here:

GitHub - ESMCI/ccs_config_cesm: CESM CIME Case Control System configuration files

CESM CIME Case Control System configuration files. Contribute to ESMCI/ccs_config_cesm development by creating an account on GitHub.

github.com

or can be downloaded directly via the command:

git clone https://github.com/ESMCI/ccs_config_cesm.git

It looks like there is still a perlmutter entry, so maybe that will help? I am also moving this thread to the Infrastructure forum, as they are the experts on porting and are thus likely to have a better understanding of what is needed to run on the perlmutter machine.

I hope that helps, and have a great day!

Jesse

 

[jedwards]

The perlmutter system has been unstable and rapidly evolving our port is probably out of date.
What cesm version are you interested in using there?

 

[yfang]

Thank you both for your responses. I'm using the latest version of cesm.

 

[yfang]

@jedwards Hi! I'm able to compile the code, but have permission issue related to the inputdata folder. Can you or someone help open up the permissions for the following subdirectories:
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/lnd/clm2/surfdata_map/release-clm5.0.18/surfdata_0.9x1.25_hist_78pfts_CMIP6_simyr2000_c190214.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1_ESMFmesh_cdf5_100621.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/fv0.9x1.25_141008_polemod_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/r05_nomask_c110308_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/atm_forcing.datm7.GSWP3.0.5d.v1.c170516/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.SCRIP.210520_ESMFmesh.nc: Permission denied
'/global/cfs/cdirs/ccsm1/inputdata/cdeps/datm/ozone/O3_surface.f09_g17.CMIP6-historical-WACCM.001.monthly.185001-201412.nc'

 

[jedwards]

try again now.

 

[yfang]

Still permission denied. Thanks!

 

[jedwards]

You need to be more specific than that. All the files listed above are in place and readable.

 

[yfang]

drwxrws--- 2 ssuresh ccsm1 4096 May 1 12:36 meshes
/global/cfs/cdirs/ccsm1/inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc': Permission denied

 

[jedwards]

okay, try again

 

[yfang]

Permission denied: '/global/cfs/cdirs/ccsm1/inputdata/cdeps/datm

 

[jedwards]

thanks for your patience - does it work now?

 

[yfang]

'/global/cfs/cdirs/ccsm1/inputdata/cdeps/': Permission denied
Thanks!

 

[yfang]

wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc: Permission denied

 

[yfang]

drwsrwsr-x 2 55151 ccsm1 4096 Dec 22 2015 /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing

 

[jedwards]

and now?

 

[yfang]

Same error./global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc: Permission denied

 

[yfang]

Is it caused by this?
svn export failed with output: and errput svn: E000013: Can't create temporary file from template '/global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/svn-XXXXXX': Permission denied

 

[jedwards]

no, it should be there now.

 

[yfang]

All good now. Thanks a lot!