Error setting up a case on perlmutter

Y

yfang

Yilin Fang
Member
Hi,
Has anyone tried running on perlmutter? The config_machines.xml file seems to be outdated. Is there a new one somewhere?

Thanks,
Yilin
 
nusbaume

nusbaume

Jesse Nusbaumer
CSEG and Liaisons
Staff member
Hi Yilin,

You can find the latest version of config_machines.xml in the machines directory of the ccs_config_cesm repo, which can be found on Github here:

github.com

GitHub - ESMCI/ccs_config_cesm: CESM CIME Case Control System configuration files

CESM CIME Case Control System configuration files. Contribute to ESMCI/ccs_config_cesm development by creating an account on GitHub.
github.com github.com

or can be downloaded directly via the command:

Code: 
git clone https://github.com/ESMCI/ccs_config_cesm.git

It looks like there is still a perlmutter entry, so maybe that will help? I am also moving this thread to the Infrastructure forum, as they are the experts on porting and are thus likely to have a better understanding of what is needed to run on the perlmutter machine.

I hope that helps, and have a great day!

Jesse
 
J

jedwards

CSEG and Liaisons
Staff member
The perlmutter system has been unstable and rapidly evolving our port is probably out of date.
What cesm version are you interested in using there?
 
Y

yfang

Yilin Fang
Member
@jedwards Hi! I'm able to compile the code, but have permission issue related to the inputdata folder. Can you or someone help open up the permissions for the following subdirectories:
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/lnd/clm2/surfdata_map/release-clm5.0.18/surfdata_0.9x1.25_hist_78pfts_CMIP6_simyr2000_c190214.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1_ESMFmesh_cdf5_100621.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/fv0.9x1.25_141008_polemod_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/share/meshes/r05_nomask_c110308_ESMFmesh.nc: Permission denied
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/atm_forcing.datm7.GSWP3.0.5d.v1.c170516/clmforc.GSWP3.c2011.0.5x0.5.TPQWL.SCRIP.210520_ESMFmesh.nc: Permission denied
'/global/cfs/cdirs/ccsm1/inputdata/cdeps/datm/ozone/O3_surface.f09_g17.CMIP6-historical-WACCM.001.monthly.185001-201412.nc'
 
J

jedwards

CSEG and Liaisons
Staff member
You need to be more specific than that. All the files listed above are in place and readable.
 
Y

yfang

Yilin Fang
Member
drwxrws--- 2 ssuresh ccsm1 4096 May 1 12:36 meshes
/global/cfs/cdirs/ccsm1/inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc': Permission denied
 
Y

yfang

Yilin Fang
Member
wget failed with output: and errput /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc: Permission denied
 
Y

yfang

Yilin Fang
Member
drwsrwsr-x 2 55151 ccsm1 4096 Dec 22 2015 /global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing
 
Y

yfang

Yilin Fang
Member
Same error./global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/topodata_0.9x1.SCRIP.210520_ESMFmesh.nc: Permission denied
 
Y

yfang

Yilin Fang
Member
Is it caused by this?
svn export failed with output: and errput svn: E000013: Can't create temporary file from template '/global/cfs/cdirs/ccsm1/inputdata/atm/datm7/topo_forcing/svn-XXXXXX': Permission denied
 
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