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  1. R

    CESM2.1.1, PIO building Failed

    Hello, I have tried to setup CESM2.1.1 on our cluster machine and struggling for PIO build up issue. It is hard for me to know what is wrong from the below log message. I also copy config_machine.xml below the log. Could you advice me what I am missing or where I should...
  2. F

    Problems in running CESM2.1.0

    Hi there,      I've successfully built CESM2.1.0 with the compset of FHIST, but I met a problem in the beginning of the run, here's the error log:" Opened existing file  /home/luom/apps/cesm2.1.0/inputdata/atm/cam/chem/emis/elev/H2OemissionCH4oxidat ionx2_3D_L70_1849-2015_CMIP6ensAvg_c180927.nc ...
  3. C

    Running CESM 1.2.2 on Stampede2

    Hi Jedwards:I would like to conduct high-resolution seasonal simulations driven by prescribed SST (F2000 configuration).However, the CESM2 seems to only support 0.9*1.25 degree grid spacing...When I typed source /opt/apps/lmod/lmod/init/cshit shows...-bash: setenv: command not found-bash...
  4. S

    CESM BRANCH RUN ERROR

    Hi,Thanks for your reply. Below shows the complete end of cesm.log: Opened existing file b40.1850.track1.2deg.003.cam.r.0501-01-01-00000.nc       65536 NetCDF: Attribute not found NetCDF: Attribute not found WARNING: Rearr optional argument is a pio2 feature, ignored in pio1 WARNING: Rearr...
  5. J

    CESM BRANCH RUN ERROR

    These netcdf messages are not model errors - they only indicate that a variable was not found on the input file.  If the variable was required there would be an additional abort message.   Is this the end of the cesm.log or is there more to follow?   If you can't find the correct source of the...
  6. A

    CESM2 stop running after reading regrid_vegetation.nc

    Dear Edward, I agree with you that probably the problem is the stack size limit. The problem is that when I run the cesm1.2 model  I place a command: limit stacksize unlimited in the file that I submit to the queue system. But, now in cesm2 where do I have to place that command ?Thank very...
  7. A

    CESM2 stop running after reading regrid_vegetation.nc

    Hear you have a copy of the cesm log file. The only pourpose of the this simulation is to test whether the compilation run or not. What compset do you advice me to use to test the compilation ?Cheers Agustin Invalid PIO rearranger comm max pend req (comp2io),            0  Resetting PIO...
  8. J

    CESM 1_2_1 release version number different

    https://bb.cgd.ucar.edu/googlecode-repositories-are-offline-pio-source-not-found
  9. A

    Problems with mkmapdata.sh while trying to set up a point scale run on CLM4.5 on cheyenne machine.

    Hi Erik,Thanks for the reply. I can not make it work.When I try source env_mach_specific, it gives this error:PNETCDF: Undefined variable. I provided the following path for PNETCDF: setenv PNETCDF /glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1/lib When I run gmake after this it gives...
  10. A

    Problems with mkmapdata.sh while trying to set up a point scale run on CLM4.5 on cheyenne machine.

    Hi Erik,Thanks for the reply. I can not make it work.When I try source env_mach_specific, it gives this error:PNETCDF: Undefined variable. I provided the following path for PNETCDF: setenv PNETCDF /glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1/lib When I run gmake after this it gives...
  11. A

    Problems with mkmapdata.sh while trying to set up a point scale run on CLM4.5 on cheyenne machine.

    Hi Erik,Thanks for the reply. I can not make it work.When I try source env_mach_specific, it gives this error:PNETCDF: Undefined variable. I provided the following path for PNETCDF: setenv PNETCDF /glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1/lib When I run gmake after this it gives...
  12. K

    Problem building a case with CLM5 on an intel machine

    Hi, I am trying to run CLM5 on my institute's cluster but I encountered a problem when trying to invoke case.build.This is the error messages when running case.build:  Building case in directory /users/student/$HOME/CLM/clm5.0/test50sharedlib_only is Falsemodel_only is FalseGenerating component...
  13. J

    Porting errors: build.csm_share

    See https://bb.cgd.ucar.edu/googlecode-repositories-are-offline-pio-source-not-found
  14. erik

    problem to build cesm1.2.2.1 for SOM

    This is the following documented issue: https://bb.cgd.ucar.edu/googlecode-repositories-are-offline-pio-source-not-found
  15. X

    gen_domain on edison

    I tried to generate a regional dataset for a single-point simulation on NERSC's edison.Following the workflow of https://ncar.github.io/CLM/doc/build/html/users_guide/using-clm-tools/creating-surface-datasets.html?highlight=gen_domain, I get to the step of compile gen_domain. So I follow the...
  16. A

    E_1850_CAM5_CN not running at f09_g16

    Hi everyone,I am trying to switch from CAM4 to CAM5. I have managed to run the the E_1850_CAM5_CN compset fine at f19_g16. At the 1 deg resolution (f09_g16) I run into segmentation errors though during the initial stages of the simulation.Please find the log outptut below:... Opened existing...
  17. X

    Build cesm1.2 with code modification and newly introduced namelist variables.

    Hi,I am running the cesm with the nudging capability to a reanalysis data set.The nudging capability is realized by some source code and some nudge-related namelist variables.The souce code is placed in the src.cam folder and the namelist variables are in user_n_cam.When I tried to preview the...
  18. 5

    Fail to make a dynpft dataset for a study area

    Hi, everyone. Recently i have also tried to make a regional surface data with transient  pfts from 1850 to 2100 using the mksurfdata.pl with the command  "./mksurfdata.pl -r usrspec -usr_gname $GRIDNAME -usr_gdate 160929 -y 1850-2000 -dynpft "pftdyn_hist_simyr1850-2005_sliu.txt" ".  The target...
  19. D

    Problem building CESM, buildlib.mct failed

    Hi,I am trying to build CESM on my laptop (MacOSX El Capitan). I have encountered an error with building buildlib.mct. This seems to be a common error message, but I have not been able to resolve the issue via suggestions for any other post I found. If anyone has any ideas for me to try, that...
  20. J

    Problem in building CESM 1.2.2 on CRAY XC40

    Do you have a complete source tree?  Please seehttp://forum.cgd.ucar.edu/googlecode-repositories-are-offline-pio-source-not-found
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