Abort with message NetCDF: HDF error in file

[aelkouk]

Hello, Could you please let me know if you have an idea on what would cause such an error (attached are the log files). I really appreciate your help. Thanks so much!

 

[oleson]

I'm guessing that maybe you have a netCDF-4 file that you are trying to read in, which isn't a supported file type. For example,

ncdump -k /glade/scratch/elkoukah/inputs/camels/1403/surfdata_1403_hist_16pfts_CMIP6_2005_c230815_rooting_depth.nc

netCDF-4

 

[aelkouk]

Thank you @oleson, unfortunately changing the format (e.g., cdf5) didn't work, nccopy -k 5 surfdat.nc output.cdf5
Maybe I should use another format?

 

[oleson]

No, that format should be fine.
I see other netCDF-4 files, for example, your mesh file and your forcing files, e.g.,

/glade/scratch/elkoukah/inputs/camels/1403/lnd_mesh.nc

/glade/scratch/elkoukah/inputs/camels/1403/datm/Solar_wrf2d_d01_1980-01.nc

I wonder if it is having trouble with those.

 

[aelkouk]

Yes, something was wrong with those files. Thank you!