eolivares@tamu_edu
New Member
Hello,everyone.Recently, I am trying to port the CLM5 on a linux platform. But when I creating a new_case, I get an error:[eolivares@ada5 scripts]$ ./create_newcase --case /general/home/eolivares/efrainolivares --compset B1850 --res f19_g17 --mach adaCompset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRDCompset specification file is /tiered/user/eolivares/cime/../cime_config/config_compsets.xmlCompset forcing is 1850Com forcing is Biogeochemistry intercomponent with diagnostic CO2ATM component is CAM cam6 physics:LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:ICE component is Sea ICE (cice) model version 5OCN component is POP2 EcosystemAbiotic DIC/DIC14ROF component is MOSART: MOdel for Scale Adaptive River TransportGLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):WAV component is Wave WatchESP component isPes specification file is /tiered/user/eolivares/cime/../cime_config/config_pes.xmlCompset specific settings: name is RUN_STARTDATE and value is 0001-01-01Compset specific settings: name is RUN_REFDATE and value is 0301-01-01Compset specific settings: name is RUN_TYPE and value is hybridCompset specific settings: name is RUN_REFCASE and value is b.e20.B1850.f19_g17.release_cesm2_1_0.020Compset specific settings: name is CLM_NAMELIST_OPTS and value is use_init_interp=.true.Could not find machine match for 'login5.cluster' or 'login5'Machine is adaPes setting: grid match is a%1.9x2.5.+l%1.9x2.5.+oi%gx1Pes setting: grid is a%1.9x2.5_l%1.9x2.5_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7Pes setting: compset is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRDPes setting: tasks is {'NTASKS_ATM': -4, 'NTASKS_ICE': -2, 'NTASKS_CPL': -4, 'NTASKS_LND': -2, 'NTASKS_WAV': -1, 'NTASKS_ROF': -2, 'NTASKS_OCN': -2, 'NTASKS_GLC': -1}Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1}Pes setting: rootpe is {'ROOTPE_OCN': -4, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': -2, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0}Pes setting: pstrid is {}Pes other settings: {}Pes comments: none Compset is: 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD Grid is: a%1.9x2.5_l%1.9x2.5_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'pop', 'mosart', 'cism', 'ww3', 'sesp', 'drv', 'dart']
*********************************************************************************************************************************This compset and grid combination is not scientifically supported, however it is used in 10 tests.*********************************************************************************************************************************
No project info availableNo charge_account info available, using value from PROJECTNo project info availablecesm model version found: cesm2.1.1-exp17Batch_system_type is lsfjob is case.run USER_REQUESTED_WALLTIME None USER_REQUESTED_QUEUE NoneERROR: No queues found The config_machines.xml is:[/b] TAMU IBM NeXtScale, os is Linux, 20 pes/node, batch system is LSF nxt* LINUX intel impi /scratch/user/$USER/cesm/$CASE /scratch/cesm/data $ENV{CESMROOT}/lmwg /scratch/user/$USER/cesm/archive/$CASE $ENV{CESMDATAROOT}/ccsm_baselines $ENV{CESMDATAROOT}/tools/cime/tools/cprnc/cprnc 4 lsf cseg 20 20 20 FALSE mpiexec.hydra -n {{ total_tasks }} -tpn {{ tasks_per_node }} /sw/lmod/lmod/init/perl /sw/lmod/lmod/init/env_modules_python.py /sw/lmod/lmod/init/csh /sw/lmod/lmod/init/sh /sw/lmod/lmod/libexec/lmod perl /sw/lmod/lmod/libexec/lmod python module module python/2.7.13-intel-2017b intel/2017b
The config_batch is:
bjobs bsub bkill
*********************************************************************************************************************************This compset and grid combination is not scientifically supported, however it is used in 10 tests.*********************************************************************************************************************************
No project info availableNo charge_account info available, using value from PROJECTNo project info availablecesm model version found: cesm2.1.1-exp17Batch_system_type is lsfjob is case.run USER_REQUESTED_WALLTIME None USER_REQUESTED_QUEUE NoneERROR: No queues found The config_machines.xml is:[/b] TAMU IBM NeXtScale, os is Linux, 20 pes/node, batch system is LSF nxt* LINUX intel impi /scratch/user/$USER/cesm/$CASE /scratch/cesm/data $ENV{CESMROOT}/lmwg /scratch/user/$USER/cesm/archive/$CASE $ENV{CESMDATAROOT}/ccsm_baselines $ENV{CESMDATAROOT}/tools/cime/tools/cprnc/cprnc 4 lsf cseg 20 20 20 FALSE mpiexec.hydra -n {{ total_tasks }} -tpn {{ tasks_per_node }} /sw/lmod/lmod/init/perl /sw/lmod/lmod/init/env_modules_python.py /sw/lmod/lmod/init/csh /sw/lmod/lmod/init/sh /sw/lmod/lmod/libexec/lmod perl /sw/lmod/lmod/libexec/lmod python module module python/2.7.13-intel-2017b intel/2017b
The config_batch is:
bjobs bsub bkill