felfelan@egr_msu_edu
New Member
Hi all, I have a problem in porting the CESM to our university cluster. I followed the steps to set up a case on a local machine but came across the following error in building step. I woul appreciate if someone can help.Here are the error message as well as the log file and macro file:--------------------------------------------------------------------------------------------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /egr/research-hydro/felfelan/CESM1_2/cesmRunDirUse of qw(...) as parentheses is deprecated at /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/drv/bld/build-namelist line 784. infile is /egr/research-hydro/felfelan/CESM1_2/cases/I1850_003/Buildconf/cplconf/cesm_namelistCLM configure done.CLM adding use_case 1850_control defaults for var sim_year with val 1850CLM adding use_case 1850_control defaults for var sim_year_range with val constantCLM adding use_case 1850_control defaults for var use_case_desc with val Conditions to simulate 1850 land-use CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /egr/research-hydro/felfelan/CESM1_2/cesmINdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is intel - Build Libraries: mct gptl pio csm_shareThu Oct 6 17:55:19 EDT 2016 /egr/research-hydro/felfelan/CESM1_2/cesmEXEROOT/intel/openmpi/nodebug/nothreads/mct.bldlog.161006-175515Thu Oct 6 17:55:19 EDT 2016 /egr/research-hydro/felfelan/CESM1_2/cesmEXEROOT/intel/openmpi/nodebug/nothreads/gptl.bldlog.161006-175515ERROR: buildlib.gptl failed, see /egr/research-hydro/felfelan/CESM1_2/cesmEXEROOT/intel/openmpi/nodebug/nothreads/gptl.bldlog.161006-175515ERROR: cat /egr/research-hydro/felfelan/CESM1_2/cesmEXEROOT/intel/openmpi/nodebug/nothreads/gptl.bldlog.161006-175515---------------------------------------------------------------------------------------------------------------------------------------------------------------The log file is: Thu Oct 6 17:44:39 EDT 2016 /egr/research-hydro/felfelan/CESM1_2/cesmEXEROOT/intel/openmpi/nodebug/nothreads/gptl.bldlog.161006-174435Copying source to CESM EXEROOT...mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/gptl.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/gptl.c'mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLutil.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLutil.c'mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLget_memusage.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLget_memusage.c'mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLprint_memusage.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/GPTLprint_memusage.c'mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/gptl_papi.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/gptl_papi.c'mpicc -c -I/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing -O2 -fp-model precise -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL -DHAVE_MPI /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/f_wrappers.cifort: command line warning #10212: -fp-model precise evaluates in source precision with Fortran.ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'ifort: warning #10145: no action performed for file '/egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/models/utils/timing/f_wrappers.c'ar ruv libgptl.a gptl.o GPTLutil.o GPTLget_memusage.o GPTLprint_memusage.o gptl_papi.o f_wrappers.o perf_mod.o perf_utils.oar: creating libgptl.aar: gptl.o: No such file or directorygmake: *** [libgptl.a] Error 1 The Macros file---------------------------------------------------------------------------------------------------------------------------------------------------------------# Makefile Macros generated from /egr/research-hydro/felfelan/CESM1_2/cesm1_2_2/scripts/ccsm_utils/Machines/config_compilers.xml using# COMPILER=intel# OS=linux# MACH=userdefined#CPPDEFS+= -DFORTRANUNDERSCORE -DNO_R16 -Dlinux -DCPRINTEL SLIBS+=# USERDEFINED $(shell $(NETCDF_PATH)/bin/nc-config --flibs) CFLAGS:= -O2 -fp-model precise CONFIG_ARGS:= CXX_LDFLAGS:= -cxxlib CXX_LINKER:=FORTRAN ESMF_LIBDIR:= FC_AUTO_R8:= -r8 FFLAGS:= -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs FFLAGS_NOOPT:= -O0 FIXEDFLAGS:= -fixed -132 FREEFLAGS:= -free MPICC:= mpicc MPICXX:= mpicxx MPIFC:= mpif90 MPI_LIB_NAME:= MPI_PATH:= NETCDF_PATH:= USERDEFINED_MUST_EDIT_THIS PNETCDF_PATH:= SCC:= icc SCXX:= icpc SFC:= mpif90 SUPPORTS_CXX:=TRUE ifeq ($(DEBUG), TRUE) FFLAGS += -O0 -g -check uninit -check bounds -check pointers -fpe0 endif ifeq ($(DEBUG), FALSE) FFLAGS += -O2 endif ifeq ($(compile_threaded), true) LDFLAGS += -openmp CFLAGS += -openmp FFLAGS += -openmp endif ifeq ($(MODEL), pop2) CPPDEFS += -D_USE_FLOW_CONTROL endif---------------------------------------------------------------------------------------------------------------------------------------------------------------