Building on OS X + pgroup software

[fagner_silva@exaflop_com_br]

After unsuccessful tries to build CAM with gfortran and ifort on OSX, I decide to downloaded the latest version of PGROUP SUITE (12.9) and the CESM software (1_0_4). Unfortunately the model starts the compilation and stop with this error (below).

- OS X 10.8.2 and Xcode 4.5
- pgf90 12.9

Another question: is there a successfull report about the 'port' of this model to this platform with this compiler?? (OSX)

Just for your information, I did the same exercise with a linux VM (debian + pgroup compilers + cesm) with the same versions and works!

Thanks,

Fagner
===

fagnergs@rajada:/usr/local/cam5$ make
/usr/local/cesm1_0_4/models/atm/cam/bld/mkSrcfiles > /usr/local/cam5/Srcfiles
/usr/local/cesm1_0_4/models/atm/cam/bld/mkDepends Filepath Srcfiles > /usr/local/cam5/Depends
pgf90 -c -Mfree -I. -I/usr/local/cesm1_0_4/models/atm/cam/src/chemistry/pp_trop_mam3 -I/usr/local/cesm1_0_4/models/atm/cam/src/chemistry/modal_aero -I/usr/local/cesm1_0_4/models/atm/cam/src/chemistry/mozart -I/usr/local/cesm1_0_4/models/atm/cam/src/chemistry/bulk_aero -I/usr/local/cesm1_0_4/models/atm/cam/src/chemistry/utils -I/usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg -I/usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_mcica -I/usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_lw -I/usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_sw -I/usr/local/cesm1_0_4/models/atm/cam/src/physics/cam -I/usr/local/cesm1_0_4/models/atm/cam/src/dynamics/fv -I/usr/local/cesm1_0_4/models/atm/cam/src/cpl_mct -I/usr/local/cesm1_0_4/models/atm/cam/src/cpl_share -I/usr/local/cesm1_0_4/models/atm/cam/src/control -I/usr/local/cesm1_0_4/models/atm/cam/src/utils -I/usr/local/cesm1_0_4/models/utils/timing -I/usr/local/cesm1_0_4/models/utils/pio -I/usr/local/cesm1_0_4/models/utils/mct/mpeu -I/usr/local/cesm1_0_4/models/utils/mct/mct -I/usr/local/cesm1_0_4/models/utils/mct/mpi-serial -I/usr/local/cesm1_0_4/models/utils/esmf_wrf_timemgr -I/usr/local/cesm1_0_4/models/atm/cam/src/utils/pilgrim -I/usr/local/cesm1_0_4/models/drv/driver -I/usr/local/cesm1_0_4/models/drv/shr -I/usr/local/cesm1_0_4/models/ocn/docn -I/usr/local/cesm1_0_4/models/ocn/docn/cpl_mct -I/usr/local/cesm1_0_4/models/lnd/clm/src/cpl_mct -I/usr/local/cesm1_0_4/models/lnd/clm/src/cpl_share -I/usr/local/cesm1_0_4/models/lnd/clm/src/main -I/usr/local/cesm1_0_4/models/lnd/clm/src/biogeophys -I/usr/local/cesm1_0_4/models/lnd/clm/src/biogeochem -I/usr/local/cesm1_0_4/models/lnd/clm/src/riverroute -I/usr/local/cesm1_0_4/models/ice/cice/src/drivers/cpl_mct -I/usr/local/cesm1_0_4/models/ice/cice/src/drivers/cpl_share -I/usr/local/cesm1_0_4/models/ice/cice/src/mpi -I/usr/local/cesm1_0_4/models/ice/cice/src/source -I/usr/local/cesm1_0_4/models/glc/sglc/cpl_mct -I/usr/local/cesm1_0_4/models/csm_share/shr -I/usr/local/cesm1_0_4/models/csm_share/dshr -I/usr/local/include -I/usr/local/include -DNO_SHR_VMATH -DSEQ_MCT -DFORTRANUNDERSCORE -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=144 -DPLAT=96 -DPLEV=30 -DPCNST=25 -DPCOLS=16 -DPTRM=1 -DPTRN=1 -DPTRK=1 -DSTAGGERED -DCCSMCOUPLED -Dcoupled -Dncdf -DNCAT=1 -DNXGLOB=144 -DNYGLOB=96 -DNTR_AERO=0 -DBLCKX=144 -DBLCKY=96 -DMXBLCKS=1 -DDUST -DPROGSSLT -DMODAL_AERO -DMODAL_AERO_3MODE -D_USEBOX -D_NETCDF -DLINUX -DNO_R16 -i4 -Mdalign -Mextend -byteswapio -gopt -O2 -Mvect=nosse -Kieee -DHIDE_MPI -D_MPISERIAL -DNO_MPI2 /usr/local/cesm1_0_4/models/utils/mct/mpeu/m_String.F90
NOTE: your trial license will expire in 14 days, 8.46 hours.
pgf90-Fatal-/opt/pgi/osx86-64/12.9/bin/pgf901 TERMINATED by signal 11
Arguments to /opt/pgi/osx86-64/12.9/bin/pgf901
/opt/pgi/osx86-64/12.9/bin/pgf901 /usr/local/cesm1_0_4/models/utils/mct/mpeu/m_String.F90 -debug -x 120 0x80000 -x 120 0x200 -x 123 0x400 -opt 2 -terse 1 -inform warn -nohpf -nostatic -quad -x 15 2 -x 49 0x400004 -x 51 0x20 -x 57 0x4c -x 58 0x10000 -x 124 0x1000 -x 119 0x1000 -x 59 4 -x 129 0x10 -x 51 0x20 -x 124 0x401 -x 19 0x400000 -x 57 0x7b0000 -x 58 0x78031040 -x 119 0x610400 -x 70 0x6c00 -x 47 0x400000 -x 119 0x1000 -x 59 4 -x 129 0x10 -x 48 4608 -x 49 0x100 -x 120 0x200 -stdinc /opt/pgi/osx86-64/12.9/include:/usr/local/include:/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include:/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include:/usr/include -def unix -def __unix -def __unix__ -def __LITTLE_ENDIAN__ -def __inline__= -def osx86 -def __osx86 -def __osx86__ -def __APPLE__ -def __LP64__ -def __x86_64__ -def _M_IX86 -def __NO_MATH_INLINES -def __amd64__ -def __extension__= -def __SSE__ -def __MMX__ -def __SSE2__ -def __SSE3__ -def __SSSE3__ -idir . -idir /usr/local/cesm1_0_4/models/atm/cam/src/chemistry/pp_trop_mam3 -idir /usr/local/cesm1_0_4/models/atm/cam/src/chemistry/modal_aero -idir /usr/local/cesm1_0_4/models/atm/cam/src/chemistry/mozart -idir /usr/local/cesm1_0_4/models/atm/cam/src/chemistry/bulk_aero -idir /usr/local/cesm1_0_4/models/atm/cam/src/chemistry/utils -idir /usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg -idir /usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_mcica -idir /usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_lw -idir /usr/local/cesm1_0_4/models/atm/cam/src/physics/rrtmg/ext/rrtmg_sw -idir /usr/local/cesm1_0_4/models/atm/cam/src/physics/cam -idir /usr/local/cesm1_0_4/models/atm/cam/src/dynamics/fv -idir /usr/local/cesm1_0_4/models/atm/cam/src/cpl_mct -idir /usr/local/cesm1_0_4/models/atm/cam/src/cpl_share -idir /usr/local/cesm1_0_4/models/atm/cam/src/control -idir /usr/local/cesm1_0_4/models/atm/cam/src/utils -idir /usr/local/cesm1_0_4/models/utils/timing -idir /usr/local/cesm1_0_4/models/utils/pio -idir /usr/local/cesm1_0_4/models/utils/mct/mpeu -idir /usr/local/cesm1_0_4/models/utils/mct/mct -idir /usr/local/cesm1_0_4/models/utils/mct/mpi-serial -idir /usr/local/cesm1_0_4/models/utils/esmf_wrf_timemgr -idir /usr/local/cesm1_0_4/models/atm/cam/src/utils/pilgrim -idir /usr/local/cesm1_0_4/models/drv/driver -idir /usr/local/cesm1_0_4/models/drv/shr -idir /usr/local/cesm1_0_4/models/ocn/docn -idir /usr/local/cesm1_0_4/models/ocn/docn/cpl_mct -idir /usr/local/cesm1_0_4/models/lnd/clm/src/cpl_mct -idir /usr/local/cesm1_0_4/models/lnd/clm/src/cpl_share -idir /usr/local/cesm1_0_4/models/lnd/clm/src/main -idir /usr/local/cesm1_0_4/models/lnd/clm/src/biogeophys -idir /usr/local/cesm1_0_4/models/lnd/clm/src/biogeochem -idir /usr/local/cesm1_0_4/models/lnd/clm/src/riverroute -idir /usr/local/cesm1_0_4/models/ice/cice/src/drivers/cpl_mct -idir /usr/local/cesm1_0_4/models/ice/cice/src/drivers/cpl_share -idir /usr/local/cesm1_0_4/models/ice/cice/src/mpi -idir /usr/local/cesm1_0_4/models/ice/cice/src/source -idir /usr/local/cesm1_0_4/models/glc/sglc/cpl_mct -idir /usr/local/cesm1_0_4/models/csm_share/shr -idir /usr/local/cesm1_0_4/models/csm_share/dshr -idir /usr/local/include -idir /usr/local/include -def NO_SHR_VMATH -def SEQ_MCT -def FORTRANUNDERSCORE -def CO2A -def MAXPATCH_PFT=numpft+1 -def LSMLAT=1 -def LSMLON=1 -def PLON=144 -def PLAT=96 -def PLEV=30 -def PCNST=25 -def PCOLS=16 -def PTRM=1 -def PTRN=1 -def PTRK=1 -def STAGGERED -def CCSMCOUPLED -def coupled -def ncdf -def NCAT=1 -def NXGLOB=144 -def NYGLOB=96 -def NTR_AERO=0 -def BLCKX=144 -def BLCKY=96 -def MXBLCKS=1 -def DUST -def PROGSSLT -def MODAL_AERO -def MODAL_AERO_3MODE -def _USEBOX -def _NETCDF -def LINUX -def NO_R16 -def HIDE_MPI -def _MPISERIAL -def NO_MPI2 -preprocess -freeform -i4 -extend -x 125 2 -vect 48 -y 54 1 -freeform -x 49 0x1000 -modexport /var/folders/9h/mqxh1nm13696dhwp1sn8s_hm0000gn/T/pgf90SthheM2OVaQB.cmod -modindex /var/folders/9h/mqxh1nm13696dhwp1sn8s_hm0000gn/T/pgf90mthhKwR1lXlk.cmdx -output /var/folders/9h/mqxh1nm13696dhwp1sn8s_hm0000gn/T/pgf90mthhKzBxQ_BF.ilm
make: *** [m_String.o] Error 127

 

[eaton]

I just ran across this same problem using the pgi-12.5 compilers on a Cray XE6 system. Since I had successfully built other cam source trees using the same compiling environment I was suspicious that this was a compiler problem. The failure in m_String.F90 is reproducible if I redo the build from scratch. But instead I tried just continuing the build from where it failed, thinking that if the compiler is running into some memory related problem that starting it from where it left off would clear out the bad state. This was successful for me. So just try reissuing the make command from the point of failure.