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CAM4_0.9X1.25 problem

L

littleho_song@yahoo_com

Member
Hi,I need some help on the CESM1.2 running with CAM4 (F_AMIP) with 0.9x1.25 resolution.I followed the instruction carefully and configure this on a Linux machine –(Intel(R) Xeon(R) CPU E7- 4870  @ 2.40GHz, Red Hat Enterprise Linux Server release 6.2 (Santiago))pgf90 11.10-0 64-bit target on x86-64 Linux -tp nehalem (shr_sys_abort) ERROR:  Input string (sulf is not a cld borne aerosol,cannot form interstitial species name (shr_sys_abort) WARNING: calling shr_mpi_abort() and stopping MPI_Abort: error code = 1001
 
E

eaton

CSEG and Liaisons
The error message indicates that CAM thinks the modal aerosols are active.  But modal aerosols are not active with the cam4 physics package.  So there is something wrong with how you've set the run up.  We'll need more details about how you set this run up.
 
E

eaton

CSEG and Liaisons
The error message indicates that CAM thinks the modal aerosols are active.  But modal aerosols are not active with the cam4 physics package.  So there is something wrong with how you've set the run up.  We'll need more details about how you set this run up.
 
L

littleho_song@yahoo_com

Member
What do you need to check that out? Again I followed exactly the same procedure in the user manual Chapter 5. &prescribed_aero_nl
 prescribed_aero_datapath               = '/CESM_INPUT_DATA_0.9X1.25/atm/cam/chem/trop_mozart_aero/aero'
 prescribed_aero_file           = 'aero_1.9x2.5_L26_1850-2005_c091112.nc'
 prescribed_aero_specifier              = 'sulf:SO4', 'bcar1:CB1', 'bcar2:CB2', 'ocar1:OC1', 'ocar2:OC2', 'sslt1:SSLT01', 'sslt2:SSLT02',
         'sslt3:SSLT03', 'sslt4:SSLT04', 'dust1:DST01', 'dust2:DST02', 'dust3:DST03', 'dust4:DST04'
 
L

littleho_song@yahoo_com

Member
What do you need to check that out? Again I followed exactly the same procedure in the user manual Chapter 5. &prescribed_aero_nl
 prescribed_aero_datapath               = '/CESM_INPUT_DATA_0.9X1.25/atm/cam/chem/trop_mozart_aero/aero'
 prescribed_aero_file           = 'aero_1.9x2.5_L26_1850-2005_c091112.nc'
 prescribed_aero_specifier              = 'sulf:SO4', 'bcar1:CB1', 'bcar2:CB2', 'ocar1:OC1', 'ocar2:OC2', 'sslt1:SSLT01', 'sslt2:SSLT02',
         'sslt3:SSLT03', 'sslt4:SSLT04', 'dust1:DST01', 'dust2:DST02', 'dust3:DST03', 'dust4:DST04'
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
Yes, all the data needed to run the model is in: DIN_LOC_ROOT

This doesn't depend on the compset you are using.
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
Yes, all the data needed to run the model is in: DIN_LOC_ROOT

This doesn't depend on the compset you are using.
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member

You say: "I need some help on the CESM1.2 running with CAM4 (F_AMIP_CAM4) with 0.9x1.25 resolution."There is no compset called F_AMIP_CAM4. If you want to run AMIP type run with CAM4 physics, you should use: F_AMIP or F_AMIP_CNPlease could you check the name of your compset.
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member

You say: "I need some help on the CESM1.2 running with CAM4 (F_AMIP_CAM4) with 0.9x1.25 resolution."There is no compset called F_AMIP_CAM4. If you want to run AMIP type run with CAM4 physics, you should use: F_AMIP or F_AMIP_CNPlease could you check the name of your compset.
 
L

littleho_song@yahoo_com

Member
Then that is what I got for the error:  because there is no sulf:SO4 etc in the netcdf file. Even a basic CAM4 won't run?&prescribed_aero_nl
prescribed_aero_datapath = '/CESM_INPUT_DATA_0.9X1.25/atm/cam/chem/trop_mozart_aero/aero'
prescribed_aero_file = 'aero_1.9x2.5_L26_1850-2005_c091112.nc'
prescribed_aero_specifier = 'sulf:SO4', 'bcar1:CB1', 'bcar2:CB2', 'ocar1:OC1', 'ocar2:OC2', 'sslt1:SSLT01', 'sslt2:SSLT02',
'sslt3:SSLT03', 'sslt4:SSLT04', 'dust1:DST01', 'dust2:DST02', 'dust3:DST03', 'dust4:DST04'
 
L

littleho_song@yahoo_com

Member
Then that is what I got for the error:  because there is no sulf:SO4 etc in the netcdf file. Even a basic CAM4 won't run?&prescribed_aero_nl
prescribed_aero_datapath = '/CESM_INPUT_DATA_0.9X1.25/atm/cam/chem/trop_mozart_aero/aero'
prescribed_aero_file = 'aero_1.9x2.5_L26_1850-2005_c091112.nc'
prescribed_aero_specifier = 'sulf:SO4', 'bcar1:CB1', 'bcar2:CB2', 'ocar1:OC1', 'ocar2:OC2', 'sslt1:SSLT01', 'sslt2:SSLT02',
'sslt3:SSLT03', 'sslt4:SSLT04', 'dust1:DST01', 'dust2:DST02', 'dust3:DST03', 'dust4:DST04'
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
I just did a 5-day run on yellwostone with the sequence of commands below and the run succesfully completed.
Please could you send me the list of commands you did to make sure there is no problem in the commands you used.
Then we will go from there.

## go to the model script directory and create a new case called "test_FAMIP"
cd  ~/cesm1_2_0/scripts/
./create_newcase -case ~/test_FAMIP -res f09_f09 -compset F_AMIP -mach yellowstone## go to the case directory
cd ~/test_FAMIP## set up
./cesm_setup## Build
./test_FAMIP.build## Submit your bob (after editing project number. This is specific to yellowstone)
./test_FAMIP.submit
  
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
I just did a 5-day run on yellwostone with the sequence of commands below and the run succesfully completed.
Please could you send me the list of commands you did to make sure there is no problem in the commands you used.
Then we will go from there.

## go to the model script directory and create a new case called "test_FAMIP"
cd  ~/cesm1_2_0/scripts/
./create_newcase -case ~/test_FAMIP -res f09_f09 -compset F_AMIP -mach yellowstone## go to the case directory
cd ~/test_FAMIP## set up
./cesm_setup## Build
./test_FAMIP.build## Submit your bob (after editing project number. This is specific to yellowstone)
./test_FAMIP.submit
  
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
I just did a 5-day run on yellwostone with the sequence of commands below and the run succesfully completed.
Please could you send me the list of commands you did to make sure there is no problem in the commands you used.
Then we will go from there.## go to the model script directory and create a new case called "test_FAMIP"
cd  ~/cesm1_2_0/scripts/
./create_newcase -case ~/test_FAMIP -res f09_f09 -compset F_AMIP -mach yellowstone## go to the case directory
cd ~/test_FAMIP## set up
./cesm_setup## Build
./test_FAMIP.build## Submit your bob (after editing project number. This is specific to yellowstone)
./test_FAMIP.submit
  
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
I just did a 5-day run on yellwostone with the sequence of commands below and the run succesfully completed.
Please could you send me the list of commands you did to make sure there is no problem in the commands you used.
Then we will go from there.## go to the model script directory and create a new case called "test_FAMIP"
cd  ~/cesm1_2_0/scripts/
./create_newcase -case ~/test_FAMIP -res f09_f09 -compset F_AMIP -mach yellowstone## go to the case directory
cd ~/test_FAMIP## set up
./cesm_setup## Build
./test_FAMIP.build## Submit your bob (after editing project number. This is specific to yellowstone)
./test_FAMIP.submit
  
 
hannay

hannay

Cecile Hannay
AMWG Liaison
Staff member
The file
/CESM_INPUT_DATA_0.9X1.25/atm/cam/chem/trop_mozart_aero/aero/aero_1.9x2.5_L26_1850-2005_c091112.nc should contain the variable: "SO4" not "sulf:SO4"
 
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