Can the AMWG diagnostics script be run on timeseries format data?

[strandwg]

It's been so long I don't recall if the AMWG diagnostics can be run on timeseries format CAM data, or if it can only use history files.

Thanks!

 

[hannay]

Hi Gary,

I had to look around as it is not the way I usually run it.

The cesm postprocessing tool
/glade/p/cesm/postprocessing
has flag ATMDIAG_TEST_TIMESERIES.

By default it is set to False but if you set:
ATMDIAG_TEST_TIMESERIES=True
you can run the diags from timeseries.

I just did a test with CAM output and it seems to work. I assume it would work for the other components although I didn't test that.

 

[strandwg]

Hi Gary,

I had to look around as it is not the way I usually run it.

The cesm postprocessing tool
/glade/p/cesm/postprocessing
has flag ATMDIAG_TEST_TIMESERIES.

By default it is set to False but if you set:
ATMDIAG_TEST_TIMESERIES=True
you can run the diags from timeseries.

I just did a test with CAM output and it seems to work. I assume it would work for the other components although I didn't test that.

Sweet! Thanks, Ceçile!

Can you point me to your test script?

 

[hannay]

This is how I compute the climos from the timeseries.
I copied timeseries in: /glade/scratch/hannay/timeseries/$CASE/
to test whether this was working.

setenv POSTPROCESS_PATH /glade/p/cesm/postprocessing
cesm_pp_activate

set CASE = b.e21.BRCP85.f09_g17.cesm2-cmip5.001
create_postprocess --caseroot /glade/work/hannay/cesm-postprocess/$CASE

cd /glade/work/hannay/cesm-postprocess/$CASE
./pp_config --set DOUT_S_ROOT=/glade/scratch/hannay/timeseries/$CASE/
./pp_config --set ATM_GRID=0.9x1.25
./pp_config --set ATMDIAG_OUTPUT_ROOT_PATH=/glade/scratch/hannay/diagnostics-output/atm
./pp_config --set ATMDIAG_test_first_yr=2081
./pp_config --set ATMDIAG_test_nyrs=20

qsub < ./atm_averages

 

[strandwg]

Thanks, Cecile!

You must have some directories in your PATH that I don't - could you do

prompt> env | egrep "^PATH="

Thanks!

 

[hannay]

env | egrep "^PATH="

PATH=/glade/u/apps/contrib/virtualenv/12.0.7:glade/apps/contrib/virtualenv/12.0.7:/glade/u/apps/ch/opt/xxdiff/4.0.1/gnu/8.3.0/bin:/glade/u/apps/ch/opt/ncl/6.6.2/intel/19.0.5/bin:/glade/u/apps/ch/opt/python/3.7.9/gnu/9.1.0/bin:/glade/u/apps/ch/opt/nco/4.9.5/gnu/9.1.0/bin:/glade/u/apps/ch/opt/ncview/2.1.7/gnu/8.3.0/bin:/glade/u/apps/ch/opt/lmod/8.1.7/bin:/ncar/opt/slurm/latest/bin:/glade/u/apps/ch/opt/netcdf/4.7.4/intel/19.0.5/bin:/glade/u/apps/ch/opt/ncarcompilers/0.5.0/intel/19.0.5/mpi:/glade/u/apps/ch/opt/mpt/2.22/bin:/glade/u/apps/ch/opt/ncarcompilers/0.5.0/intel/19.0.5:/glade/u/apps/opt/intel/2019u5/vtune_amplifier/bin64:/glade/u/apps/opt/intel/2019u5/inspector/bin64:/glade/u/apps/opt/intel/2019u5/advisor/bin64:/glade/u/apps/opt/intel/2019u5/compilers_and_libraries/linux/bin/intel64:/glade/u/apps/opt/vncmgr:/glade/u/apps/opt/globus-utils:/glade/u/apps/ch/opt/usr/bin:/glade/u/home/hannay/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/games:/opt/ibutils/bin:/usr/lib/mit/bin:/glade/u/apps/opt/hpss/hpss-client.5.0.2.p5/bin:/glade/u/apps/ch/os/usr/bin:/glade/u/apps/ch/opt/hpe-cpe/1.4.1/bin:/opt/pbs/bin