Hello,
I am attempted to run a MUSICA-V0 for 3 days. After editing user_nl_cam, I attempt to build the case, but it freezes when here:
Calling /glade/work/nmariscal/my_cesm_sandbox/components/cam//cime_config/buildnml
...calling cam buildcpp to set build time options
I went on the CAM-Chem troubleshooting page, and it says that this could be due to an issue with the namelist. I went in to check it and it all seems to be fine (see below). I then go ahead and run ./preview_namelist and it also freezes in the same place. If you could please help me resolve this issue it would be greatly appreciated.
user_nl_cam:
&cam_history_nl
avgflag_pertape = 'A', 'A', 'A', 'I', 'I'
mfilt = 1, 1, 1, 8, 24
nhtfrq = 0, 0, -24, -3, -1
#interpolate to standard grid
interpolate_output = .true.,.false.,.false.,.false.,.false.
interpolate_gridtype = 1
interpolate_nlat = 192
interpolate_nlon = 288
fincl2 = 'PS', 'PMID', 'PDELDRY', 'Z3', 'T', 'U', 'V', 'Q', 'CLOUD', 'CLDTOT', 'H2O', 'PHIS', 'Nudge_U', 'Nudge_V', 'Nudge_T',
'Target_U', 'Target_V', 'Target_T', 'O3', 'O3S', 'NO', 'NO2', 'OH', 'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'MACR', 'MPAN', 'MVK', 'CRESOL', 'PM25', 'NO2_CLXF', 'SFISOP', 'SFMTERP', 'SFBCARY', 'SFCH3OH', 'SFC2H5OH', 'SFCH3CHO',
'SFMEK', 'SFCH3CN', 'SFCH2O', 'SFC2H6', 'SFC3H8', 'SFC2H4', 'SFC3H6', 'SFCH3COCH3', 'SFBIGALK', 'SFBIGENE', 'SFBENZENE',
'SFTOLUENE', 'SFXYLENES', 'SFCO', 'SFNO', 'SFC2H2', 'SFCH3OOH', 'SO2', 'SFSO2', 'NH3', 'SFNH3', 'SFIVOC', 'SFSVOC', 'BCARY'
fincl3 = 'PS', 'PMID', 'PDELDRY', 'Z3', 'T', 'U', 'V', 'Q', 'CLOUD', 'CLDTOT', 'H2O', 'PHIS', 'Nudge_U', 'Nudge_V', 'Nudge_T',
'Target_U', 'Target_V', 'Target_T', 'O3', 'O3S', 'NO', 'NO2', 'OH', 'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'BCARY', 'SO2', 'NH3'
fincl4 = 'PS', 'PMID', 'Z3', 'T', 'U', 'V', 'Q', 'O3', 'NO', 'NO2', 'OH', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'BCARY', 'SO2', 'NH3'
#for southeast michigan
fincl5lonlat = '82w:84w_42n:43n'
fincl5 = 'T', 'U', 'V', 'Q', 'O3_SRF', 'NO_SRF', 'NO2_SRF', 'NOY_SRF', 'CO_SRF', 'C2H6_SRF', 'C3H8_SRF', 'TOLUENE_SRF', 'ISOP_SRF',
'MTERP_SRF', 'CH3OH_SRF', 'CH2O_SRF', 'CH3CHO_SRF', 'CH3COCH3_SRF', 'PM25_SRF', 'SO2_SRF'
sathist_track_infile = '/glade/work/emmons/aircraft_pos/aircraft_profilelist_20140717_20140819_frappe-discoveraq_mrg60_c20210622.nc'
sathist_ntimestep = 1
sathist_nclosest = 4
sathist_hfilename_spec = '%c.cam.aircraft_mrg60_4closest.%y-%m-%d-%s.nc'
sathist_fincl = 'PS', 'PMID', 'Z3', 'M_dens', 'T', 'U', 'V', 'Q', 'H2O', 'RELHUM', 'PBLH', 'CLOUD', 'O3', 'O3S', 'NO', 'NO2', 'OH',
'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY', 'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D',
'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2', 'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3',
'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH', 'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN',
'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES', 'MACR', 'MPAN', 'MVK', 'CRESOL', 'PM25',
'SO2', 'NH3', 'BCARY'
/
#omit nudging, defaults should be fine
&nudging_nl
model_times_per_day = 384
nudge_beg_day = 1
nudge_beg_month = 5
I am attempted to run a MUSICA-V0 for 3 days. After editing user_nl_cam, I attempt to build the case, but it freezes when here:
Calling /glade/work/nmariscal/my_cesm_sandbox/components/cam//cime_config/buildnml
...calling cam buildcpp to set build time options
I went on the CAM-Chem troubleshooting page, and it says that this could be due to an issue with the namelist. I went in to check it and it all seems to be fine (see below). I then go ahead and run ./preview_namelist and it also freezes in the same place. If you could please help me resolve this issue it would be greatly appreciated.
user_nl_cam:
&cam_history_nl
avgflag_pertape = 'A', 'A', 'A', 'I', 'I'
mfilt = 1, 1, 1, 8, 24
nhtfrq = 0, 0, -24, -3, -1
#interpolate to standard grid
interpolate_output = .true.,.false.,.false.,.false.,.false.
interpolate_gridtype = 1
interpolate_nlat = 192
interpolate_nlon = 288
fincl2 = 'PS', 'PMID', 'PDELDRY', 'Z3', 'T', 'U', 'V', 'Q', 'CLOUD', 'CLDTOT', 'H2O', 'PHIS', 'Nudge_U', 'Nudge_V', 'Nudge_T',
'Target_U', 'Target_V', 'Target_T', 'O3', 'O3S', 'NO', 'NO2', 'OH', 'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'MACR', 'MPAN', 'MVK', 'CRESOL', 'PM25', 'NO2_CLXF', 'SFISOP', 'SFMTERP', 'SFBCARY', 'SFCH3OH', 'SFC2H5OH', 'SFCH3CHO',
'SFMEK', 'SFCH3CN', 'SFCH2O', 'SFC2H6', 'SFC3H8', 'SFC2H4', 'SFC3H6', 'SFCH3COCH3', 'SFBIGALK', 'SFBIGENE', 'SFBENZENE',
'SFTOLUENE', 'SFXYLENES', 'SFCO', 'SFNO', 'SFC2H2', 'SFCH3OOH', 'SO2', 'SFSO2', 'NH3', 'SFNH3', 'SFIVOC', 'SFSVOC', 'BCARY'
fincl3 = 'PS', 'PMID', 'PDELDRY', 'Z3', 'T', 'U', 'V', 'Q', 'CLOUD', 'CLDTOT', 'H2O', 'PHIS', 'Nudge_U', 'Nudge_V', 'Nudge_T',
'Target_U', 'Target_V', 'Target_T', 'O3', 'O3S', 'NO', 'NO2', 'OH', 'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'BCARY', 'SO2', 'NH3'
fincl4 = 'PS', 'PMID', 'Z3', 'T', 'U', 'V', 'Q', 'O3', 'NO', 'NO2', 'OH', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY',
'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D', 'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2',
'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3', 'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH',
'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN', 'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES',
'BCARY', 'SO2', 'NH3'
#for southeast michigan
fincl5lonlat = '82w:84w_42n:43n'
fincl5 = 'T', 'U', 'V', 'Q', 'O3_SRF', 'NO_SRF', 'NO2_SRF', 'NOY_SRF', 'CO_SRF', 'C2H6_SRF', 'C3H8_SRF', 'TOLUENE_SRF', 'ISOP_SRF',
'MTERP_SRF', 'CH3OH_SRF', 'CH2O_SRF', 'CH3CHO_SRF', 'CH3COCH3_SRF', 'PM25_SRF', 'SO2_SRF'
sathist_track_infile = '/glade/work/emmons/aircraft_pos/aircraft_profilelist_20140717_20140819_frappe-discoveraq_mrg60_c20210622.nc'
sathist_ntimestep = 1
sathist_nclosest = 4
sathist_hfilename_spec = '%c.cam.aircraft_mrg60_4closest.%y-%m-%d-%s.nc'
sathist_fincl = 'PS', 'PMID', 'Z3', 'M_dens', 'T', 'U', 'V', 'Q', 'H2O', 'RELHUM', 'PBLH', 'CLOUD', 'O3', 'O3S', 'NO', 'NO2', 'OH',
'CH4', 'CO', 'ISOP', 'GLYOXAL', 'PAN', 'NOX', 'NOY', 'MTERP', 'NO3', 'O3_CHMP', 'O3_CHML', 'O3_Prod', 'O3_Loss', 'O1D',
'ISOPAO2', 'ISOPBO2', 'MACRO2', 'MALO2', 'MCO3', 'MDIALO2', 'MEKO2', 'NTERPO2', 'GLYALD', 'HNO3', 'HO2', 'O', 'NO3',
'BENZENE', 'BIGALD', 'BIGALK', 'BIGENE', 'C2H2', 'C2H4', 'C2H5OH', 'C2H6', 'C3H6', 'C3H8', 'CH2O', 'CH3CHO', 'CH3CN',
'CH3COCH3', 'CH3COCHO', 'CH3COOH', 'CH3OH', 'CH3OOH', 'TOLUENE', 'XYLENES', 'MACR', 'MPAN', 'MVK', 'CRESOL', 'PM25',
'SO2', 'NH3', 'BCARY'
/
#omit nudging, defaults should be fine
&nudging_nl
model_times_per_day = 384
nudge_beg_day = 1
nudge_beg_month = 5