./case.build_ failed in Derecho

[dharmendraks841]

Hi Derecho and CESM users,

Can you please look into this issue, a error was is encountered while ./case.build



Building rof with output to /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/rof.bldlog.240204-093240

Building glc with output to /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/glc.bldlog.240204-093240

Building wav with output to /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/wav.bldlog.240204-093240

Building esp with output to /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/esp.bldlog.240204-093240

mosart built in 2.231916 seconds

cice built in 2.717597 seconds

sesp built in 3.768538 seconds

cam built in 6.232555 seconds

ww built in 6.672138 seconds

pop built in 7.283777 seconds

cism built in 8.370537 seconds

ERROR: BUILD FAIL: cism.buildlib failed, cat /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/glc.bldlog.240204-093240

dksingh@derecho1:/glade/work/dksingh/code_cesmupdated_derecho/bssp245smbb_hybrid2033> vi user_nl_cam

dksingh@derecho1:/glade/work/dksingh/code_cesmupdated_derecho/bssp245smbb_hybrid2033> vi /glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/glc.bldlog.240204-093240



icx: warning: -Wl,-rpath,/glade/u/apps/derecho/23.06/spack/opt/spack/intel-oneapi-mkl/2023.0.0/oneapi/2023.0.0/f2sh/mkl/2023.0.0/lib/intel64: 'linker' input unused [-Wunused-command-line-argument]

/glade/work/dksingh/code/my_cesm_code/components/cism/source_cism/libglimmer/writestats.c:70:10: error: call to undeclared library function 'isalnum' with type 'int (int)'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

while (isalnum(resfname) && i < CFG_LEN) i++;

^

/glade/work/dksingh/code/my_cesm_code/components/cism/source_cism/libglimmer/writestats.c:70:10: note: include the header <ctype.h> or explicitly provide a declaration for 'isalnum'

1 error generated.

gmake[2]: *** [CMakeFiles/glimmercismfortran.dir/build.make:1106: CMakeFiles/glimmercismfortran.dir/libglimmer/writestats.c.o] Error 1

gmake[2]: Leaving directory '/glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/glc'

gmake[1]: *** [CMakeFiles/Makefile2:86: CMakeFiles/glimmercismfortran.dir/all] Error 2

gmake[1]: Leaving directory '/glade/derecho/scratch/dksingh/bssp245smbb_hybrid2033/bld/glc'

gmake: *** [Makefile:94: all] Error 2

ERROR cism.buildexe: gmake -j 16 failed: 512


Kind regards
Dharmendra

 

[slevis]

If you have not modified the model in some way, then I would double check that you completed all of these steps:
1) ran ./manage_externals/checkout_externals
2) created the case
3) ran ./case_setup
4) then ran ./case_build

Maybe start over to make sure. If you still get the error, then I will let someone else try to help.

 

[sacks]

It looks like this build issue was fixed in a more recent version of CISM. The ideal solution would be to update to a more recent version of CESM to get this CISM version. If that isn't possible, then you could make the necessary one-line change in your code base:

needed for intel 2023.0.0 on derecho by jedwards4b · Pull Request #55 · ESCOMP/CISM

Fixes #54

github.com