case.submit error: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')]

[March Xu]

hi everyone.

when I run ./case.submit, there is something wrong with this:
No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')]
and it happend after st_archive completed:

Archiving restarts for datm (atm)
Archiving restarts for clm (lnd)
copying file /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.r.2018-09-30-00000.nc to /home/clm5.0/archive/test_8.28_again/rest/2018-09-30-00000/test_8.28_again.clm2.r.2018-09-30-00000.nc
Copying /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.h0.2018-09-30-00000.nc to /home/clm5.0/archive/test_8.28_again/rest/2018-09-30-00000/test_8.28_again.clm2.h0.2018-09-30-00000.nc
WARNING: ncdump -v locfnh /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.rh0.2018-09-30-00000.nc failed rc=1
out=
err=ncdump: locfnh: No such variable
copying file /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.rh0.2018-09-30-00000.nc to /home/clm5.0/archive/test_8.28_again/rest/2018-09-30-00000/test_8.28_again.clm2.rh0.2018-09-30-00000.nc
Archiving restarts for mosart (rof)
Archiving restarts for drv (cpl)
copying file /home/clm5.0/output/test_8.28_again/run/test_8.28_again.cpl.r.2018-09-30-00000.nc to /home/clm5.0/archive/test_8.28_again/rest/2018-09-30-00000/test_8.28_again.cpl.r.2018-09-30-00000.nc
Archiving restarts for dart (esp)
Archiving history files for datm (atm)
Archiving history files for clm (lnd)
copying /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.h0.2018-09-30-00000.nc to /home/clm5.0/archive/test_8.28_again/lnd/hist/test_8.28_again.clm2.h0.2018-09-30-00000.nc
moving /home/clm5.0/output/test_8.28_again/run/test_8.28_again.clm2.h0.2017-06-01-00000.nc to /home/clm5.0/archive/test_8.28_again/lnd/hist/test_8.28_again.clm2.h0.2017-06-01-00000.nc
Archiving history files for mosart (rof)
Archiving history files for drv (cpl)
Archiving history files for dart (esp)
st_archive completed
ERROR: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')]

but it has done outputting many files in the $CASE/run and $CASE/bld
and I can run cesm.exe.
and I do follow the steps that I've run case.setup and case.build with no errors.

So does anybody know what to do with this error? and how to fix it?

 

[oleson]

I'm not sure. There are some posts for the same error when running CESM using Docker, e.g.,

[case.submit error] ERROR: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')]

Hello all, I am new user of cesm. I am using cesm2.1.3 version, compiler is intel on my centOS linux machine. I was running ./case.submit but I was encountering error. ERROR: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')] I have read this ...

bb.cgd.ucar.edu

In that case, it was safe to ignore the error.

I also see this in your CaseStatus:

2021-08-29 15:00:31: case.build error
ERROR: Error gathering provenance information from manage_externals.

manage_externals error message:
ERROR:root:[Errno 2] No such file or directory: 'git': 'git'
ERROR:root:In directory
/home/clm5.0/src/fates
Command execution failed. Does the executable exist?:
git rev-parse --quiet --verify HEAD^{commit}

manage_externals output:
Processing externals description file : Externals.cfg
Processing externals description file : Externals_CLM.cfg
Processing externals description file : Externals_CISM.cfg
Checking status of externals: clm, fates,
ERROR: In directory
/home/clm5.0/src/fates
Command execution failed. Does the executable exist?:
git rev-parse --quiet --verify HEAD^{commit}

To solve this, either:

(1) Find and fix the problem: From /home/clm5.0, try to get this command to work:
manage_externals/checkout_externals --status --verbose --no-logging

(2) If you don't need provenance information, rebuild with --skip-provenance-check

Again, I'm not sure if this means that there is something wrong with your externals or your checkout of the code?
Did you try (1) and/or (2) as suggested?

 

[March Xu]

I'm not sure. There are some posts for the same error when running CESM using Docker, e.g.,

[case.submit error] ERROR: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')]

Hello all, I am new user of cesm. I am using cesm2.1.3 version, compiler is intel on my centOS linux machine. I was running ./case.submit but I was encountering error. ERROR: No result from jobs [('case.run', None), ('case.st_archive', 'case.run or case.test')] I have read this ...

bb.cgd.ucar.edu

In that case, it was safe to ignore the error.

I also see this in your CaseStatus:

2021-08-29 15:00:31: case.build error
ERROR: Error gathering provenance information from manage_externals.

manage_externals error message:
ERROR:root:[Errno 2] No such file or directory: 'git': 'git'
ERROR:root:In directory
/home/clm5.0/src/fates
Command execution failed. Does the executable exist?:
git rev-parse --quiet --verify HEAD^{commit}

manage_externals output:
Processing externals description file : Externals.cfg
Processing externals description file : Externals_CLM.cfg
Processing externals description file : Externals_CISM.cfg
Checking status of externals: clm, fates,
ERROR: In directory
/home/clm5.0/src/fates
Command execution failed. Does the executable exist?:
git rev-parse --quiet --verify HEAD^{commit}

To solve this, either:

(1) Find and fix the problem: From /home/clm5.0, try to get this command to work:
manage_externals/checkout_externals --status --verbose --no-logging

(2) If you don't need provenance information, rebuild with --skip-provenance-check

Again, I'm not sure if this means that there is something wrong with your externals or your checkout of the code?
Did you try (1) and/or (2) as suggested?

Thanks for your response!
I’ve watched that post you shared and I noticed that this may be an error I can safely ignore.
So I just ignored it, and I ran my case.exe without any warnings and errors!
and for the error in my CaseStatus, in the end, I built my case correctly by taking the second suggestion.

rebuild with --skip-provenance-check

and thanks again!!!