CESM 1.2.2 produce log files but does not produce any output files

[swapniln@cdac_in]

We are facing issues while running the CESM 1.2.2_Chem compset FGEOS_C4SSOA_L40CN ,that has offline metrology at resolution f09_f09  .The Run  produces logs(attached) but not the output files even after several hours of running on 20 nodes 24 cores in our cluster.Only got the the following lines repeatedly. QNEG3 from chemistry/SO2:m=144 lat/lchnk=    528 Min. mixing ratio violated at   35 points.  Reset to  1.0E-36 Worst =-2.3E-12 at i,k=  11 56
 QNEG3 from chemistry/NH3:m=147 lat/lchnk=    528 Min. mixing ratio violated at  224 points.  Reset to  1.0E-36 Worst =-2.3E-12 at i,k=  12 55
 QNEG3 from chemistry/NH3:m=147 lat/lchnk=    550 Min. mixing ratio violated at  250 points.  Reset to  1.0E-36 Worst =-3.2E-12 at i,k=  15 43
 QNEG3 from chemistry/HNO3:m= 12 lat/lchnk=    552 Min. mixing ratio violated at    2 points.  Reset to  1.0E-36 Worst =-2.6E-12 at i,k=  10 51
 QNEG3 from chemistry/SO2:m=144 lat/lchnk=    552 Min. mixing ratio violated at   25 points.  Reset to  1.0E-36 Worst =-1.3E-12 at i,k=   9 46
 QNEG3 from chemistry/HNO3:m= 12 lat/lchnk=    606 Min. mixing ratio violated at    1 points.  Reset to  1.0E-36 Worst =-1.1E-12 at i,k=  13 50

 dpcoup cant adjust           83          605            1
    0.000000000000000         0.000000000000000        1.1806213644209496E-036
 dpcoup cant adjust          105          605            1
    0.000000000000000         0.000000000000000        1.1806213644209496E-036
 dpcoup cant adjust           83          606            1
    0.000000000000000         0.000000000000000        1.1806644363481728E-036
 dpcoup cant adjust          105          606            1
    0.000000000000000         0.000000000000000        1.1806644363481728E-036

 filew failed, worst i, j, qtmp, q =             1            4
  -2.2262798827753103E-165  -3.2866019470211914E-176
  filew failed, worst i, j, qtmp, q =             1            5
  -8.9156639447258462E-158  -2.8582180462778489E-172
  filew failed, worst i, j, qtmp, q =             1            6
  -3.7608880215401240E-156  -1.1478613261186694E-173
  filew failed, worst i, j, qtmp, q =             1           56
  -4.3126998991077206E-014   1.2219135389770861E-016
  filew failed, worst i, j, qtmp, q =             1           56
  -1.9254140803734435E-013   5.3826162427036263E-016