CESM crashes!

[Neupane]

Hi there, I am trying to run CESM2.2.0. in Stampede2 TACC system. The model compiles, builds, and gets the data fine. But when I try to submit the sbatch script, it gives me the following message in the log file. Any idea about what is going on?

 

[jedwards]

What is the compset and resolution? What is the pelayout, compiler and mpi library?

 

[jedwards]

What is the output of preview_run? Are you using the case.submit script to submit?

 

[Neupane]

Hi J Edwards,
Here is the detail:
--compset B1850 \
--res f09_g17 \

gcc --version
gcc (GCC) 6.3.0

PE Layout:
6 Nodes
16 tasks per node.
Right now I am trying to run for just 2 years, 24 months. But I would like to run from 1850- present later on.

login3.stampede2(1173)$ mpif90 -v
mpif90 for the Intel(R) MPI Library 2018 Update 2 for Linux*
Copyright(C) 2003-2018, Intel Corporation. All rights reserved.
ifort version 18.0.2

Below is the script I am using for batch submission:

 

[jedwards]

If you want to follow the cesm process I can try to help but I do not have the time or resources to support your custom submit script.

 

[Neupane]

Sure, I would like to follow. Let me know how I do that. I am stuck in this for quite some time now.

 

[jedwards]

CIME documentation — CIME master documentation

 

[Neupane]

HI @jedwards :

I have a question regarding my earlier question, and just wondering if you would have any insight into this. For the same above sbatch submission script (in the earlier thread above), it gave me a different error this time. I just wanted to make sure if this is related to the TACC system, or is it something else, I would highly appreciate any thoughts you would provide. This is my system specification.

1) intel/18.0.2 4) git/2.24.1
7) cmake/3.20.2
2) libfabric/1.7.0 5) autotools/1.1
8) xalt/2.10.37
3) impi/18.0.2 6) python2/2.7.15
9) TACC
impi/18.0.2

The slurm.out file mentioned: /tmp/slurmd/job10521248/slurm_script:28: command not found: 64,3,3,64

I am trying to run HIST compset
--compset FHIST \
--res f09_f09_mg17 \

The log file mentioned following error:

 

[jedwards]

The string 64,3,3,64 looks like a cam input variable:
npr_yz

In your script you have a space in that variable assignment. But I already told you I can't support this run method.

 

[Neupane]

I just wanted to make sure if it was something to do with the TACC system. Yes, I am giving up running this way. Thanks much!