tienyiah@uci_edu
New Member
Hi, I am working on cheyenne. I create a case using the following code:#!/bin/bash
~/ucar_models/cesm1_2_2_1/scripts/create_newcase
-case HI_CESM1
-compset E_1850_CN
-res T31_gx3v7
-mach cheyenne
Then in the $CASE directory, I run ./cesm_setup # works fine./HI_CESM1.build # error the output message is like thisThu Feb 7 00:51:23 MST 2019 /glade/scratch/tienyiao/HI_CESM1/bld/atm.bldlog.190207-005116
ERROR: cam.buildexe.csh failed, see /glade/scratch/tienyiao/HI_CESM1/bld/atm.bldlog.190207-005116
Cat the build log gives mpif90 -c -I. -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/glade/u/apps/ch/opt/netcdf-mpi/4.4.1.1/mpt/2.15/intel/17.0.1//include -I/glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1//include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/csm_share/shr -I. -I/gpfs/u/home/tienyiao/projects/cesm1_test/HI_CESM1/SourceMods/src.cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/pp_none -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/mozart -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/bulk_aero -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/utils -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/physics/cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/advection/slt -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_mct -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_share -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/control -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/utils -I/glade/scratch/tienyiao/HI_CESM1/bld/lib/include -no-opt-dynamic-align -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=96 -DPLAT=48 -DPLEV=26 -DPCNST=3 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=31 -DPTRN=31 -DPTRK=31 -DSPMD -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -free /glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/grmult.F90
mpif90 -c -I. -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/glade/u/apps/ch/opt/netcdf-mpi/4.4.1.1/mpt/2.15/intel/17.0.1//include -I/glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1//include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/csm_share/shr -I. -I/gpfs/u/home/tienyiao/projects/cesm1_test/HI_CESM1/SourceMods/src.cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/pp_none -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/mozart -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/bulk_aero -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/utils -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/physics/cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/advection/slt -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_mct -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_share -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/control -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/utils -I/glade/scratch/tienyiao/HI_CESM1/bld/lib/include -no-opt-dynamic-align -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=96 -DPLAT=48 -DPLEV=26 -DPCNST=3 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=31 -DPTRN=31 -DPTRK=31 -DSPMD -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -free /glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/hdinti.F90
ifort: command line remark #10411: option '-no-opt-dynamic-align' is deprecated and will be removed in a future release. Please use the replacement option '-qno-opt-dynamic-align'
ifort: command line remark #10411: option '-no-opt-dynamic-align' is deprecated and will be removed in a future release. Please use the replacement option '-qno-opt-dynamic-align'
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(23): error #6580: Name in only-list does not exist. [XM]
use commap, only: w, xm
-----------------------------^
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(932): error #6580: Name in only-list does not exist. [RSQ]
use commap, only: rsq, cs
-----------------------^
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(932): error #6580: Name in only-list does not exist. [CS]
use commap, only: rsq, cs
... The error message is mainly complaining about the CAM source code.Hope someone can help me with this.
~/ucar_models/cesm1_2_2_1/scripts/create_newcase
-case HI_CESM1
-compset E_1850_CN
-res T31_gx3v7
-mach cheyenne
Then in the $CASE directory, I run ./cesm_setup # works fine./HI_CESM1.build # error the output message is like thisThu Feb 7 00:51:23 MST 2019 /glade/scratch/tienyiao/HI_CESM1/bld/atm.bldlog.190207-005116
ERROR: cam.buildexe.csh failed, see /glade/scratch/tienyiao/HI_CESM1/bld/atm.bldlog.190207-005116
Cat the build log gives mpif90 -c -I. -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/glade/u/apps/ch/opt/netcdf-mpi/4.4.1.1/mpt/2.15/intel/17.0.1//include -I/glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1//include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/csm_share/shr -I. -I/gpfs/u/home/tienyiao/projects/cesm1_test/HI_CESM1/SourceMods/src.cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/pp_none -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/mozart -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/bulk_aero -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/utils -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/physics/cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/advection/slt -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_mct -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_share -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/control -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/utils -I/glade/scratch/tienyiao/HI_CESM1/bld/lib/include -no-opt-dynamic-align -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=96 -DPLAT=48 -DPLEV=26 -DPCNST=3 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=31 -DPTRN=31 -DPTRK=31 -DSPMD -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -free /glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/grmult.F90
mpif90 -c -I. -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/glade/u/apps/ch/opt/netcdf-mpi/4.4.1.1/mpt/2.15/intel/17.0.1//include -I/glade/u/apps/ch/opt/pnetcdf/1.8.0/mpt/2.15/intel/17.0.1//include -I/glade/scratch/tienyiao/HI_CESM1/bld/intel/mpt/nodebug/nothreads/include -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/csm_share/shr -I. -I/gpfs/u/home/tienyiao/projects/cesm1_test/HI_CESM1/SourceMods/src.cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/pp_none -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/mozart -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/bulk_aero -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/chemistry/utils -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/physics/cam -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/advection/slt -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_mct -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/cpl_share -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/control -I/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/utils -I/glade/scratch/tienyiao/HI_CESM1/bld/lib/include -no-opt-dynamic-align -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=96 -DPLAT=48 -DPLEV=26 -DPCNST=3 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=31 -DPTRN=31 -DPTRK=31 -DSPMD -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -free /glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/hdinti.F90
ifort: command line remark #10411: option '-no-opt-dynamic-align' is deprecated and will be removed in a future release. Please use the replacement option '-qno-opt-dynamic-align'
ifort: command line remark #10411: option '-no-opt-dynamic-align' is deprecated and will be removed in a future release. Please use the replacement option '-qno-opt-dynamic-align'
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(23): error #6580: Name in only-list does not exist. [XM]
use commap, only: w, xm
-----------------------------^
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(932): error #6580: Name in only-list does not exist. [RSQ]
use commap, only: rsq, cs
-----------------------^
/glade/u/home/tienyiao/ucar_models/cesm1_2_2_1/models/atm/cam/src/dynamics/eul/spetru.F90(932): error #6580: Name in only-list does not exist. [CS]
use commap, only: rsq, cs
... The error message is mainly complaining about the CAM source code.Hope someone can help me with this.