CESM1.2.2 - Problem creating timing files when DOUT_S=TRUE

[aliceb]

Affected releases - CESM1.2.2

There is a problem in the run script when short term archiving is set to true (DOUT_S=TRUE) and subsequent problem with the creation of the timing files directory in the $CASEROOT.

cd $CASEROOT
if ($DOUT_S == 'TRUE') then
 echo "Archiving cesm output to $DOUT_S_ROOT"
 echo "Calling the short-term archiving script st_archive.sh"
 cd $RUNDIR; $CASETOOLS/st_archive.sh
endif

If you have short term archiving on, you end up in $RUNDIR instead of $CASEROOT when the timing scripts runs, and getTiming.csh does not switch back before sourcing ccsm_getenv.
The fix is to change the line above from:

cd $RUNDIR; $CASETOOLS/st_archive.sh

to:

cd $RUNDIR; $CASETOOLS/st_archive.sh; cd $CASEROOT