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CESM1_2_2 run time error during build

A

a_anukesh@iitgn_ac_in

New Member
I am using the intel compiler to compile CESM 1.2.2. I get the following error while building.
setenv COMP_OCN xocn
setenv COMP_ROF xrof
setenv COMP_WAV xwav
setenv COMP_CPL cpl
setenv SCRIPTSROOT /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/scripts
setenv UTILROOT /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/scripts/ccsm_utils
setenv CASETOOLS /home/anukesh/Documents/CESM_CASES/test1/Tools
setenv CASEBUILD /home/anukesh/Documents/CESM_CASES/test1/Buildconf
setenv CCSM_COMPSET 2000_XATM_XLND_XICE_XOCN_XROF_XGLC_XWAV
setenv CCSM_LCOMPSET 2000_XATM_XLND_XICE_XOCN_XROF_XGLC_XWAV
setenv CCSM_SCOMPSET UNSET
setenv CCSM_CCOST 0
setenv CCSM_GCOST 0
setenv CCSM_MCOST 0
setenv XMLMODE normal
if ( 0 != 0 ) then
rm env_case
if ( 0 != 0 ) then
endif
end
if ( -e env_build.xml ) then
source env_build
setenv OS LINUX
setenv COMPILERS intel,ibm,pgi,pathscale,gnu,cray,lahey
setenv COMPILER intel
setenv MPILIBS openmpi,mpich,mpt,mpt,ibm,mpi-serial
setenv MPILIB openmpi
setenv PIO_CONFIG_OPTS 
setenv CESMSCRATCHROOT /home/anukesh/Documents/CESM_Scratch
setenv EXEROOT /home/anukesh/Documents/CESM_CASES/test1/bld
setenv SUPPORTED_BY USERDEFINED_optional
setenv CALENDAR NO_LEAP
setenv COMP_INTERFACE MCT
setenv USE_ESMF_LIB FALSE
setenv DEBUG FALSE
setenv BUILD_THREADED FALSE
setenv USE_TRILINOS FALSE
setenv GMAKE gmake
setenv GMAKE_J 1
setenv XROF_FLOOD_MODE NULL
setenv BUILD_COMPLETE FALSE
setenv SMP_BUILD 0
setenv SMP_VALUE a0l0r0i0o0g0w0c0
setenv NINST_BUILD 0
setenv NINST_VALUE a1l1r1i1o1g1w1
setenv BUILD_STATUS 0
setenv GRID a%4x5_l%4x5_oi%gx3v7_r%r05_m%gx3v7_g%null_w%null
setenv ATM_GRID 4x5
setenv ATM_NX 72
setenv ATM_NY 46
setenv LND_GRID 4x5
setenv LND_NX 72
setenv LND_NY 46
setenv OCN_GRID gx3v7
setenv OCN_NX 100
setenv OCN_NY 116
setenv ICE_GRID gx3v7
setenv ICE_NX 100
setenv ICE_NY 116
setenv ROF_GRID r05
setenv ROF_NX 720
setenv ROF_NY 360
setenv GLC_GRID 4x5
setenv GLC_NX 72
setenv GLC_NY 46
setenv WAV_GRID null
setenv WAV_NX 0
setenv WAV_NY 0
setenv MASK_GRID gx3v7
setenv OBJROOT /home/anukesh/Documents/CESM_CASES/test1/bld
setenv LIBROOT /home/anukesh/Documents/CESM_CASES/test1/bld/lib
setenv INCROOT /home/anukesh/Documents/CESM_CASES/test1/bld/lib/include
setenv SHAREDLIBROOT /home/anukesh/Documents/CESM_CASES/test1/bld
setenv SHAREDLIBROOTDIR /home/anukesh/Documents/CESM_CASES/test1/bld
if ( 0 != 0 ) then
rm env_build
if ( 0 != 0 ) then
endif
end
if ( -e env_run.xml ) then
source env_run
setenv RUNDIR /home/anukesh/Documents/CESM_CASES/test1/run
setenv CCSM_REPOTAG cesm1_2_2
setenv CASESTR UNSET
setenv LOGDIR /home/anukesh/Documents/CESM_CASES/test1/logs
setenv RUN_TYPE startup
setenv RUN_STARTDATE 0001-01-01
setenv START_TOD 0
setenv RUN_REFCASE case.std
setenv RUN_REFDATE 0001-01-01
setenv RUN_REFTOD 00000
setenv BRNCH_RETAIN_CASENAME FALSE
setenv GET_REFCASE FALSE
setenv STOP_OPTION ndays
setenv STOP_N 5
setenv STOP_DATE -999
setenv REST_OPTION ndays
setenv REST_N 5
setenv REST_DATE -999
setenv CONTINUE_RUN FALSE
setenv RESUBMIT 0
setenv NCPL_BASE_PERIOD day
setenv ATM_NCPL 48
setenv LND_NCPL 48
setenv ICE_NCPL 48
setenv OCN_NCPL 1
setenv GLC_NCPL 1
setenv ROF_NCPL 48
setenv WAV_NCPL 48
setenv OCN_TIGHT_COUPLING FALSE
setenv MPI_RUN_COMMAND UNSET
setenv PIO_ASYNC_INTERFACE FALSE
setenv PIO_STRIDE -1
setenv PIO_ROOT 1
setenv PIO_NUMTASKS -1
setenv PIO_TYPENAME netcdf
setenv PIO_DEBUG_LEVEL 0
setenv PIO_BLOCKSIZE -1
setenv PIO_BUFFER_SIZE_LIMIT -1
setenv OCN_PIO_STRIDE -99
setenv OCN_PIO_ROOT 0
setenv OCN_PIO_NUMTASKS -99
setenv OCN_PIO_TYPENAME nothing
setenv LND_PIO_STRIDE -99
setenv LND_PIO_ROOT -99
setenv LND_PIO_NUMTASKS -99
setenv LND_PIO_TYPENAME nothing
setenv ROF_PIO_STRIDE -99
setenv ROF_PIO_ROOT -99
setenv ROF_PIO_NUMTASKS -99
setenv ROF_PIO_TYPENAME nothing
setenv ICE_PIO_STRIDE -99
setenv ICE_PIO_ROOT -99
setenv ICE_PIO_NUMTASKS -99
setenv ICE_PIO_TYPENAME nothing
setenv ATM_PIO_STRIDE -99
setenv ATM_PIO_ROOT -99
setenv ATM_PIO_NUMTASKS -99
setenv ATM_PIO_TYPENAME nothing
setenv CPL_PIO_STRIDE -99
setenv CPL_PIO_ROOT -99
setenv CPL_PIO_NUMTASKS -99
setenv CPL_PIO_TYPENAME nothing
setenv GLC_PIO_STRIDE -99
setenv GLC_PIO_ROOT -99
setenv GLC_PIO_NUMTASKS -99
setenv GLC_PIO_TYPENAME nothing
setenv WAV_PIO_STRIDE -99
setenv WAV_PIO_ROOT -99
setenv WAV_PIO_NUMTASKS -99
setenv WAV_PIO_TYPENAME nothing
setenv BUDGETS FALSE
setenv DRV_THREADING FALSE
setenv COMP_RUN_BARRIERS FALSE
setenv BFBFLAG FALSE
setenv INFO_DBUG 1
setenv TIMER_LEVEL 12
setenv CPL_DECOMP 0
setenv CHECK_TIMING TRUE
setenv SAVE_TIMING FALSE
setenv HIST_OPTION never
setenv HIST_N -999
setenv HIST_DATE -999
setenv AVGHIST_OPTION never
setenv AVGHIST_N -999
setenv AVGHIST_DATE -999
setenv BATCHQUERY USERDEFINED_optional_run
setenv BATCHSUBMIT USERDEFINED_optional_run
setenv DIN_LOC_ROOT /home/anukesh/Documents/cesm_input/inputdata
setenv DIN_LOC_ROOT_CLMFORC USERDEFINED_optional_build
setenv DOUT_S FALSE
setenv DOUT_S_ROOT USERDEFINED_optional_run
setenv DOUT_S_SAVE_INT_REST_FILES FALSE
setenv DOUT_S_SAVE_ALL_ON_DISK FALSE
setenv DOUT_S_SAVE_ROOT UNSET
setenv DOUT_L_MS FALSE
setenv DOUT_L_MSROOT USERDEFINED_optional_run
setenv DOUT_L_HPSS_ACCNT 00000000
setenv DOUT_L_HTAR FALSE
setenv SSTICE_STREAM UNSET
setenv SSTICE_DATA_FILENAME UNSET
setenv SSTICE_GRID_FILENAME UNSET
setenv SSTICE_YEAR_ALIGN -999
setenv SSTICE_YEAR_START -999
setenv SSTICE_YEAR_END -999
setenv CPL_EPBAL off
setenv CPL_ALBAV false
setenv CCSM_BGC none
setenv GLC_NEC 10
setenv CCSM_CO2_PPMV 379.000
setenv ATM_DOMAIN_FILE domain.lnd.fv4x5_gx3v7.091218.nc
setenv ATM_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv LND_DOMAIN_FILE domain.lnd.fv4x5_gx3v7.091218.nc
setenv LND_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv ROF_DOMAIN_FILE UNSET
setenv ROF_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv WAV_DOMAIN_FILE UNSET
setenv WAV_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv ICE_DOMAIN_FILE domain.ocn.gx3v7.120323.nc
setenv ICE_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv OCN_DOMAIN_FILE domain.ocn.gx3v7.120323.nc
setenv OCN_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv GLC_DOMAIN_FILE UNSET
setenv GLC_DOMAIN_PATH /home/anukesh/Documents/cesm_input/inputdata/share/domains
setenv ATM2OCN_FMAPNAME cpl/cpl6/map_fv4x5_to_gx3v7_aave_da_091218.nc
setenv ATM2OCN_SMAPNAME cpl/cpl6/map_fv4x5_to_gx3v7_bilin_da_091218.nc
setenv ATM2OCN_VMAPNAME cpl/cpl6/map_fv4x5_to_gx3v7_bilin_da_091218.nc
setenv OCN2ATM_FMAPNAME cpl/cpl6/map_gx3v7_to_fv4x5_aave_da_091218.nc
setenv OCN2ATM_SMAPNAME cpl/cpl6/map_gx3v7_to_fv4x5_aave_da_091218.nc
setenv ATM2LND_FMAPNAME idmap
setenv ATM2LND_SMAPNAME idmap
setenv LND2ATM_FMAPNAME idmap
setenv LND2ATM_SMAPNAME idmap
setenv ROF2LND_FMAPNAME lnd/clm2/mappingdata/maps/4x5/map_0.5x0.5_nomask_to_4x5_nomask_aave_da_c110822.nc
setenv ROF2LND_SMAPNAME lnd/clm2/mappingdata/maps/4x5/map_0.5x0.5_nomask_to_4x5_nomask_aave_da_c110822.nc
setenv LND2ROF_FMAPNAME lnd/clm2/mappingdata/maps/4x5/map_4x5_nomask_to_0.5x0.5_nomask_aave_da_c110822.nc
setenv ROF2OCN_FMAPNAME idmap
setenv ROF2OCN_RMAPNAME cpl/cpl6/map_r05_to_gx3v7_e1000r500_090903.nc
setenv ATM2WAV_SMAPNAME idmap
setenv OCN2WAV_SMAPNAME idmap
setenv ICE2WAV_SMAPNAME idmap
setenv WAV2OCN_SMAPNAME idmap
setenv VECT_MAP cart3d
setenv EPS_FRAC 1.0e-02
setenv EPS_AAREA 9.0e-07
setenv EPS_AMASK 1.0e-13
setenv EPS_AGRID 1.0e-12
setenv EPS_OAREA 1.0e-01
setenv EPS_OMASK 1.0e-06
setenv EPS_OGRID 1.0e-02
setenv PTS_MODE FALSE
setenv PTS_LAT -999.99
setenv PTS_LON -999.99
if ( 0 != 0 ) then
rm env_run
if ( 0 != 0 ) then
endif
end
if ( -e env_mach_pes.xml ) then
source env_mach_pes
setenv NTASKS_ATM 1
setenv NTHRDS_ATM 1
setenv ROOTPE_ATM 0
setenv NINST_ATM 1
setenv NINST_ATM_LAYOUT concurrent
setenv NTASKS_LND 1
setenv NTHRDS_LND 1
setenv ROOTPE_LND 0
setenv NINST_LND 1
setenv NINST_LND_LAYOUT concurrent
setenv NTASKS_ICE 1
setenv NTHRDS_ICE 1
setenv ROOTPE_ICE 0
setenv NINST_ICE 1
setenv NINST_ICE_LAYOUT concurrent
setenv NTASKS_OCN 1
setenv NTHRDS_OCN 1
setenv ROOTPE_OCN 0
setenv NINST_OCN 1
setenv NINST_OCN_LAYOUT concurrent
setenv NTASKS_CPL 1
setenv NTHRDS_CPL 1
setenv ROOTPE_CPL 0
setenv NTASKS_GLC 1
setenv NTHRDS_GLC 1
setenv ROOTPE_GLC 0
setenv NINST_GLC 1
setenv NINST_GLC_LAYOUT concurrent
setenv NTASKS_ROF 1
setenv NTHRDS_ROF 1
setenv ROOTPE_ROF 0
setenv NINST_ROF 1
setenv NINST_ROF_LAYOUT concurrent
setenv NTASKS_WAV 1
setenv NTHRDS_WAV 1
setenv ROOTPE_WAV 0
setenv NINST_WAV 1
setenv NINST_WAV_LAYOUT concurrent
setenv PSTRID_ATM 1
setenv PSTRID_LND 1
setenv PSTRID_ICE 1
setenv PSTRID_OCN 1
setenv PSTRID_CPL 1
setenv PSTRID_GLC 1
setenv PSTRID_ROF 1
setenv PSTRID_WAV 1
setenv TOTALPES 1
setenv PES_LEVEL 2cm
setenv MAX_TASKS_PER_NODE 2
setenv PES_PER_NODE 2
setenv COST_PES 0
setenv CCSM_PCOST 3
setenv CCSM_TCOST 0
setenv CCSM_ESTCOST 6
if ( 0 != 0 ) then
rm env_mach_pes
if ( 0 != 0 ) then
endif
end
if ( -e env_test.xml ) then
end
source env_mach_specific
if ( 0 != 0 ) then
set fname = env_derived
cat
source env_derived
set MODELS = ( cpl atm lnd ice ocn glc wav rof )
set COMPONENTS = ( cpl xatm xlnd xice xocn xglc xwav xrof )
set NTASKS = ( 1 1 1 1 1 1 1 1 )
set NTHRDS = ( 1 1 1 1 1 1 1 1 )
set ROOTPE = ( 0 0 0 0 0 0 0 0 )
set PSTRID = ( 1 1 1 1 1 1 1 1 )
set NINST = ( 1 1 1 1 1 1 1 1 )
cp -f env_derived LockedFiles/env_derived.locked
cd /home/anukesh/Documents/CESM_CASES/test1
if ! ( -d /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf ) mkdir /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf
cd /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf
if ( -e /home/anukesh/Documents/CESM_CASES/test1/user_nl_cpl ) then
/home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/scripts/ccsm_utils/Tools/user_nlcreate -user_nl_file /home/anukesh/Documents/CESM_CASES/test1/user_nl_cpl -namelist_name cpl_inparm
endif
if ( 0 ) then
/home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/drv/bld/build-namelist -infile /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/cesm_namelist -caseroot /home/anukesh/Documents/CESM_CASES/test1 -scriptsroot /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/scripts -grid a%4x5_l%4x5_oi%gx3v7_r%r05_m%gx3v7_g%null_w%null -rof_grid r05 -atm_grid 4x5 -lnd_grid 4x5 -ocn_grid gx3v7 -wav_grid null
 infile is /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/cesm_namelist
if ( -d /home/anukesh/Documents/CESM_CASES/test1/run ) then
cp /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/drv_in /home/anukesh/Documents/CESM_CASES/test1/run/.
cp /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/seq_maps.rc /home/anukesh/Documents/CESM_CASES/test1/run/.
cp /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/atm_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/cpl_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/glc_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/ice_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/lnd_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/ocn_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/rof_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/Buildconf/cplconf/wav_modelio.nml /home/anukesh/Documents/CESM_CASES/test1/run/.
endif
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/anukesh/Documents/cesm_input/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM BUILDEXE SCRIPT STARTING
rm: No match.
 COMPILER is intel
 - Build Libraries: mct gptl pio csm_share

Fri Aug 26 15:22:16 IST 2016 /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.160826-152216
ERROR: buildlib.mct failed, see /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.160826-152216
ERROR: cat /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.160826-152216------------------------------------------------------------------------------------------------------------------------------

Please see the attaced macros file------------------------------------------------------------------------------------------------------------------------------and error produced in mct.bldlog file
Fri Aug 26 16:09:51 IST 2016 /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.160826-160951
setenv MCT_DIR /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/utils/mct
setenv LIBDIR /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads
setenv MCT_LIBDIR /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct
echo MCT_LIBDIR /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct
MCT_LIBDIR /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct
cd /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct
echo Copying source to CCSM EXEROOT...
Copying source to CCSM EXEROOT...
cp /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/utils/mct/Makefile .
mkdir mct
cp /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/utils/mct/mct/Makefile mct
mkdir mpeu
cp /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/utils/mct/mpeu/Makefile mpeu
mkdir mpi-serial
cp /home/anukesh/Documents/CESM_1_2_2/cesm1_2_2/models/utils/mct/mpi-serial/Makefile mpi-serial
set runconf = 0
set runclean = 0
echo Running configure...
Running configure...
echo for OS=LINUX MACH=userdefined
for OS=LINUX MACH=userdefined
gmake -f /home/anukesh/Documents/CESM_CASES/test1/Tools/Makefile /home/anukesh/Documents/CESM_CASES/test1/bld/intel/openmpi/nodebug/nothreads/mct/Makefile.conf
gmake: Command not found.
if ( 0 == 1 ) then
cp -p Makefile.conf Makefile.conf.old
cp: cannot stat ‘Makefile.conf’: No such file or directory
gmake
gmake: Command not found.
exit 1I also tried with solution given here https://bb.cgd.ucar.edu/problem-building-cesm-yellowstone does not seems to workPlease help me fix this
 
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