CESM1_2_2_1/F_1850_CAM5 - MPT: shepherd terminated

W

wxalpha

New Member
Thank you for your help in advance.

I am running the CESM 1_2_2_1 on Cheyenne. The compset is F_1850_CAM5 and the resolution is f19_f19. The model was compiled successfully. But when I submit the job, the job terminated with the error message: MPT: shepherd terminated: r7i7n8.ib0.cheyenne.ucar.edu - job aborting. I check the log files and I didn't find other errors. Thank you for help in advance!

cesm.log:
1: Opened existing file
1: /glade/p/cesmdata/cseg/inputdata/atm/cam/inic/fv/cami-mam3_0000-01-01_1.9x2.5_L
1: 30_c090306.nc 65536
1: Opened existing file
1: /glade/p/cesmdata/cseg/inputdata/atm/cam/topo/USGS-gtopo30_1.9x2.5_remap_c05060
1: 2.nc 131072
1: NetCDF: Invalid dimension ID or name
MPT: shepherd terminated: r7i7n8.ib0.cheyenne.ucar.edu - job aborting

atm.log:
chem_surfvals_init: ghg surface values are fixed as follows
co2 volume mixing ratio = 2.847000000000000E-004
ch4 volume mixing ratio = 7.916000000000000E-007
n2o volume mixing ratio = 2.756800000000000E-007
f11 volume mixing ratio = 1.248000000000000E-011
f12 volume mixing ratio = 0.000000000000000E+000
INITIALIZE_RADBUFFER: ntoplw = 1 pressure: 364.346569404006
Creating new decomp: 2602096144

cpl.log:
(seq_timemgr_clockPrint) Intervl yms = 9999 0 0

(seq_mct_drv) : Initialize each component: atm, lnd, rof, ocn, ice, glc, wav
(seq_mct_drv) : Initialize atm component ATM
 
W

wxalpha

New Member
./create_newcase -case ${case} -res f19_f19 -compset F_1850_CAM5 -mach cheyenne

env_mach_specific.cheyenne file:
#! /bin/tcsh

# -------------------------------------------------------------------------
# Laramie build specific settings
# -------------------------------------------------------------------------
source /etc/profile.d/modules.csh

module purge

module load intel/17.0.1
module load ncarenv/1.0
module load mkl
module load ncarcompilers/0.4.1
module load mpt/2.19

if( $MPILIB == "mpi-serial" ) then
module load netcdf/4.6.1
else

module load netcdf-mpi/4.6.1
module load pnetcdf/1.11.0

endif

set accountno = `cat /glade/u/home/<my_usename>/.cesm_proj`

# -------------------------------------------------------------------------

# Build and runtime environment variables - edit before the initial build

# -------------------------------------------------------------------------
setenv OMP_STACKSIZE 256M
setenv NETCDF_PATH $NETCDF
setenv PNETCDF_PATH $PNETCDF
setenv PROJECT $accountno
 
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