rack_hun_son@gmail_com
New Member
Hello,
I have tried to setup CESM2.1.1 on our cluster machine and struggling for PIO build up issue. It is hard for me to know what is wrong from the below log message. I also copy config_machine.xml below the log. Could you advice me what I am missing or where I should correct? ##############################################################################################
ERROR: /home/slhdesa/cesm/cime/src/build_scripts/buildlib.pio FAILED, cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127
[slhdesa@forecast1 b.day1.0.25]$ cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127make /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/Makefile -C /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASEROOT=/home/slhdesa/cesm_exp/b.day1.0.25 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASETOOLS=/home/slhdesa/cesm_exp/b.day1.0.25/Tools PIO_VERSION=1 MPILIB=mpich SHAREDLIBROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio EXEROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld COMPILER=intel BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /home/slhdesa/cesm_exp/b.day1.0.25/Tools/Makefilemake: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkSrcfilescp -f Filepath Deppath/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkDepends Deppath Srcfiles > Dependsmake: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1; CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/home/slhdesa/cesm/cime/src/CMake;/home/slhdesa/cesm/cime/src/externals/pio2/cmake" -D NetCDF_PATH:PATH=/usr/local/netcdf/432_inter18 -D PnetCDF_PATH:STRING="/usr/local/PnetCDF" -D GENF90_PATH=/home/slhdesa/cesm/cime/src/externals/genf90 /home/slhdesa/cesm/cime/src/externals/pio1-- The C compiler identification is Intel 18.0.3.20180410-- The Fortran compiler identification is Intel 18.0.3.20180410-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Detecting C compile features-- Detecting C compile features - done-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90 -- yes-- Found NetCDF_C: /usr/lib64/libnetcdf.so -- Checking NetCDF version-- Checking NetCDF version - 4.3.3.1-- Checking whether NetCDF has parallel support-- Checking whether NetCDF has parallel support - no-- Looking for nc_set_log_level-- Looking for nc_set_log_level - not found-- Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) -- Found PnetCDF_Fortran: /usr/local/PnetCDF/lib/libpnetcdf.a -- Checking PnetCDF version-- Checking PnetCDF version - 1.11.2-- MPIIO detected and enabled.-- MPI Fortran module detected and enabled.-- Configuring done-- Generating done-- Build files have been written to: /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1make: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'cat: Filepath: No such file or directorycat: Srcfiles: No such file or directory%file_modules%file_includes@check_includes Building PIO without netcdf support TRUE FALSECMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS GPTL_PATH PIO_ENABLE_TESTSmake -j 8/usr/local/bin/cmake -S/home/slhdesa/cesm/cime/src/externals/pio1 -B/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marksmake -f CMakeFiles/Makefile2 allmake[1]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/dependmake[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[ 2%] Generating pio_msg_getput_callbacks.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90[ 10%] Generating pionfread_mod.F90[ 10%] Generating pionfatt_mod.F90[ 12%] Generating pionfwrite_mod.F90[ 12%] Generating pionfput_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90[ 15%] Generating pionfget_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90[ 17%] Generating alloc_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90[ 20%] Generating box_rearrange.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90[ 22%] Generating rearrange.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90[ 25%] Generating iompi_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90[ 27%] Generating piodarray.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90[ 30%] Generating pio_spmd_utils.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/slhdesa/cesm/cime/src/externals/pio1 /home/slhdesa/cesm/cime/src/externals/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=Scanning dependencies of target piomake[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/buildmake[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[ 32%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o[ 35%] Building C object pio/CMakeFiles/pio.dir/topology.c.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -o CMakeFiles/pio.dir/topology.c.o -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/topology.c/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds.mod pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build[ 37%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_support.F90 -o CMakeFiles/pio.dir/pio_support.F90.o[ 40%] Building Fortran object pio/CMakeFiles/pio.dir/pio_types.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_types.mod pio/CMakeFiles/pio.dir/pio_types.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_support.mod pio/CMakeFiles/pio.dir/pio_support.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.build[ 42%] Building Fortran object pio/CMakeFiles/pio.dir/alloc_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.o[ 45%] Building Fortran object pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o[ 47%] Building Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.o[ 50%] Building Fortran object pio/CMakeFiles/pio.dir/pio_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_utils.F90 -o CMakeFiles/pio.dir/pio_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_mod.F90 -o CMakeFiles/pio.dir/pio_msg_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_mpi_utils.F90 -o CMakeFiles/pio.dir/pio_mpi_utils.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils.mod pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_utils.mod pio/CMakeFiles/pio.dir/pio_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/calcdecomp.mod pio/CMakeFiles/pio.dir/calcdecomp.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_msg_mod.mod pio/CMakeFiles/pio.dir/pio_msg_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.build[ 60%] Building Fortran object pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o[ 60%] Building Fortran object pio/CMakeFiles/pio.dir/pionfget_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfatt_mod.F90 -o CMakeFiles/pio.dir/pionfatt_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfget_mod.F90 -o CMakeFiles/pio.dir/pionfget_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/alloc_mod.mod pio/CMakeFiles/pio.dir/alloc_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.build[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.o[ 67%] Building Fortran object pio/CMakeFiles/pio.dir/ionf_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o CMakeFiles/pio.dir/iompi_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.o[ 70%] Building Fortran object pio/CMakeFiles/pio.dir/nf_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/nf_mod.F90 -o CMakeFiles/pio.dir/nf_mod.F90.o[ 72%] Building Fortran object pio/CMakeFiles/pio.dir/pionfread_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfread_mod.F90 -o CMakeFiles/pio.dir/pionfread_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/ionf_mod.mod pio/CMakeFiles/pio.dir/ionf_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/iompi_mod.mod pio/CMakeFiles/pio.dir/iompi_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_spmd_utils.mod pio/CMakeFiles/pio.dir/pio_spmd_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/calcdisplace_mod.mod pio/CMakeFiles/pio.dir/calcdisplace_mod.mod.stamp Intel/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfread_mod.mod pio/CMakeFiles/pio.dir/pionfread_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.build/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build[ 75%] Building Fortran object pio/CMakeFiles/pio.dir/box_rearrange.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/nf_mod.mod pio/CMakeFiles/pio.dir/nf_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.build[ 77%] Building Fortran object pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o[ 80%] Building Fortran object pio/CMakeFiles/pio.dir/pionfput_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfput_mod.F90 -o CMakeFiles/pio.dir/pionfput_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfatt_mod.mod pio/CMakeFiles/pio.dir/pionfatt_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfwrite_mod.mod pio/CMakeFiles/pio.dir/pionfwrite_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/box_rearrange.mod pio/CMakeFiles/pio.dir/box_rearrange.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build[ 82%] Building Fortran object pio/CMakeFiles/pio.dir/rearrange.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/rearrange.mod pio/CMakeFiles/pio.dir/rearrange.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build[ 85%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfget_mod.mod pio/CMakeFiles/pio.dir/pionfget_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/piodarray.mod pio/CMakeFiles/pio.dir/piodarray.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build[ 87%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfput_mod.mod pio/CMakeFiles/pio.dir/pionfput_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.build[ 90%] Building Fortran object pio/CMakeFiles/pio.dir/pio_nf_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils.mod pio/CMakeFiles/pio.dir/pio_nf_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_nf_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/piolib_mod.mod pio/CMakeFiles/pio.dir/piolib_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.build[ 92%] Building Fortran object pio/CMakeFiles/pio.dir/pio.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio.F90 -o CMakeFiles/pio.dir/pio.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio.mod pio/CMakeFiles/pio.dir/pio.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio.F90.o.provides.build[ 95%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.o[ 97%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o[100%] Linking Fortran static library libpio.acd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -P CMakeFiles/pio.dir/cmake_clean_target.cmakecd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pio.dir/link.txt --verbose=1/usr/bin/ar qc libpio.a CMakeFiles/pio.dir/pio.F90.o CMakeFiles/pio.dir/pio_kinds.F90.o CMakeFiles/pio.dir/nf_mod.F90.o CMakeFiles/pio.dir/ionf_mod.F90.o CMakeFiles/pio.dir/pio_types.F90.o CMakeFiles/pio.dir/piolib_mod.F90.o CMakeFiles/pio.dir/pio_mpi_utils.F90.o CMakeFiles/pio.dir/pio_nf_utils.F90.o CMakeFiles/pio.dir/pio_utils.F90.o CMakeFiles/pio.dir/pio_support.F90.o CMakeFiles/pio.dir/calcdisplace_mod.F90.o CMakeFiles/pio.dir/calcdecomp.F90.o CMakeFiles/pio.dir/pio_msg_mod.F90.o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o/usr/bin/ranlib libpio.amake[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[100%] Built target piomake[1]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles 0/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [IOPROC] subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )-----------------------------------------^/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [NUMIOTASKS] subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )-------------------------------------------------^ Installing pio version 1
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Example port to centos7 linux system with gcc, netcdf, pnetcdf and mpich using modules from http://www.admin-magazine.com/HPC/Articles/Environment-Modules regex.expression.matching.your.machine LINUX https://howto.get.out intel,gnu mpich,openmpi none $ENV{HOME}/cesm/scratch $ENV{HOME}/cesm/inputdata $ENV{HOME}/cesm/inputdata/lmwg $ENV{HOME}/cesm/archive/$CASE $ENV{HOME}/cesm/cesm_baselines $ENV{HOME}/cesm/tools/cime/tools/cprnc/cprnc make 8 none me@my.address 8 8 FALSE mpiexec -np {{ total_tasks }} mpirun -np {{ total_tasks }} mpirun -hostfile $ENV{PBS_JOBID} -ppn $MAX_MPITASKS_PER_NODE -n {{ total_tasks }} /usr/share/Modules/init/perl.pm /usr/share/Modules/init/python.py /usr/share/Modules/init/csh /usr/share/Modules/init/sh /usr/bin/modulecmd perl /usr/bin/modulecmd python module module intel18/compiler-18 intel18/mpich-3.2 intel18/openmpi-2.0.2 compiler/gnu/8.2.0 mpi/3.3/gcc-8.2.0 tool/netcdf/4.6.1/gcc-8.1.0 256M /usr/local/netcdf/432_inter18 /usr/local/PnetCDF -1
I have tried to setup CESM2.1.1 on our cluster machine and struggling for PIO build up issue. It is hard for me to know what is wrong from the below log message. I also copy config_machine.xml below the log. Could you advice me what I am missing or where I should correct? ##############################################################################################
ERROR: /home/slhdesa/cesm/cime/src/build_scripts/buildlib.pio FAILED, cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127
[slhdesa@forecast1 b.day1.0.25]$ cat /home/slhdesa/cesm/scratch/b.day1.0.25/bld/pio.bldlog.190811-185127make /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/Makefile -C /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASEROOT=/home/slhdesa/cesm_exp/b.day1.0.25 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 CASETOOLS=/home/slhdesa/cesm_exp/b.day1.0.25/Tools PIO_VERSION=1 MPILIB=mpich SHAREDLIBROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio EXEROOT=/home/slhdesa/cesm/scratch/b.day1.0.25/bld COMPILER=intel BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /home/slhdesa/cesm_exp/b.day1.0.25/Tools/Makefilemake: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkSrcfilescp -f Filepath Deppath/home/slhdesa/cesm_exp/b.day1.0.25/Tools/mkDepends Deppath Srcfiles > Dependsmake: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1; CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/home/slhdesa/cesm/cime/src/CMake;/home/slhdesa/cesm/cime/src/externals/pio2/cmake" -D NetCDF_PATH:PATH=/usr/local/netcdf/432_inter18 -D PnetCDF_PATH:STRING="/usr/local/PnetCDF" -D GENF90_PATH=/home/slhdesa/cesm/cime/src/externals/genf90 /home/slhdesa/cesm/cime/src/externals/pio1-- The C compiler identification is Intel 18.0.3.20180410-- The Fortran compiler identification is Intel 18.0.3.20180410-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc-- Check for working C compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Detecting C compile features-- Detecting C compile features - done-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90-- Check for working Fortran compiler: /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90-- Checking whether /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 supports Fortran 90 -- yes-- Found NetCDF_C: /usr/lib64/libnetcdf.so -- Checking NetCDF version-- Checking NetCDF version - 4.3.3.1-- Checking whether NetCDF has parallel support-- Checking whether NetCDF has parallel support - no-- Looking for nc_set_log_level-- Looking for nc_set_log_level - not found-- Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) -- Found PnetCDF_Fortran: /usr/local/PnetCDF/lib/libpnetcdf.a -- Checking PnetCDF version-- Checking PnetCDF version - 1.11.2-- MPIIO detected and enabled.-- MPI Fortran module detected and enabled.-- Configuring done-- Generating done-- Build files have been written to: /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1make: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'cat: Filepath: No such file or directorycat: Srcfiles: No such file or directory%file_modules%file_includes@check_includes Building PIO without netcdf support TRUE FALSECMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS GPTL_PATH PIO_ENABLE_TESTSmake -j 8/usr/local/bin/cmake -S/home/slhdesa/cesm/cime/src/externals/pio1 -B/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marksmake -f CMakeFiles/Makefile2 allmake[1]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/dependmake[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[ 2%] Generating pio_msg_getput_callbacks.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90[ 10%] Generating pionfread_mod.F90[ 10%] Generating pionfatt_mod.F90[ 12%] Generating pionfwrite_mod.F90[ 12%] Generating pionfput_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90[ 15%] Generating pionfget_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90[ 17%] Generating alloc_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90[ 20%] Generating box_rearrange.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90[ 22%] Generating rearrange.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90[ 25%] Generating iompi_mod.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90[ 27%] Generating piodarray.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90[ 30%] Generating pio_spmd_utils.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /home/slhdesa/cesm/cime/src/externals/genf90/genf90.pl /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90cd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/slhdesa/cesm/cime/src/externals/pio1 /home/slhdesa/cesm/cime/src/externals/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1 /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=Scanning dependencies of target piomake[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'make -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/buildmake[2]: Entering directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[ 32%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o[ 35%] Building C object pio/CMakeFiles/pio.dir/topology.c.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpicc -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -qno-opt-dynamic-align -fp-model precise -std=gnu99 -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -o CMakeFiles/pio.dir/topology.c.o -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/topology.c/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds.mod pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.build[ 37%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_support.F90 -o CMakeFiles/pio.dir/pio_support.F90.o[ 40%] Building Fortran object pio/CMakeFiles/pio.dir/pio_types.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_types.mod pio/CMakeFiles/pio.dir/pio_types.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_support.mod pio/CMakeFiles/pio.dir/pio_support.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.build[ 42%] Building Fortran object pio/CMakeFiles/pio.dir/alloc_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.o[ 45%] Building Fortran object pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o[ 47%] Building Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.o[ 50%] Building Fortran object pio/CMakeFiles/pio.dir/pio_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o[ 55%] Building Fortran object pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_utils.F90 -o CMakeFiles/pio.dir/pio_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_mod.F90 -o CMakeFiles/pio.dir/pio_msg_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_mpi_utils.F90 -o CMakeFiles/pio.dir/pio_mpi_utils.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils.mod pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_utils.mod pio/CMakeFiles/pio.dir/pio_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/calcdecomp.mod pio/CMakeFiles/pio.dir/calcdecomp.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_msg_mod.mod pio/CMakeFiles/pio.dir/pio_msg_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.build[ 60%] Building Fortran object pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o[ 60%] Building Fortran object pio/CMakeFiles/pio.dir/pionfget_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfatt_mod.F90 -o CMakeFiles/pio.dir/pionfatt_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfget_mod.F90 -o CMakeFiles/pio.dir/pionfget_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/alloc_mod.mod pio/CMakeFiles/pio.dir/alloc_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.build[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o[ 65%] Building Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.o[ 67%] Building Fortran object pio/CMakeFiles/pio.dir/ionf_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o CMakeFiles/pio.dir/iompi_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.o[ 70%] Building Fortran object pio/CMakeFiles/pio.dir/nf_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/nf_mod.F90 -o CMakeFiles/pio.dir/nf_mod.F90.o[ 72%] Building Fortran object pio/CMakeFiles/pio.dir/pionfread_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfread_mod.F90 -o CMakeFiles/pio.dir/pionfread_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/ionf_mod.mod pio/CMakeFiles/pio.dir/ionf_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/iompi_mod.mod pio/CMakeFiles/pio.dir/iompi_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_spmd_utils.mod pio/CMakeFiles/pio.dir/pio_spmd_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/calcdisplace_mod.mod pio/CMakeFiles/pio.dir/calcdisplace_mod.mod.stamp Intel/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfread_mod.mod pio/CMakeFiles/pio.dir/pionfread_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.build/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build[ 75%] Building Fortran object pio/CMakeFiles/pio.dir/box_rearrange.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/nf_mod.mod pio/CMakeFiles/pio.dir/nf_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.build[ 77%] Building Fortran object pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o[ 80%] Building Fortran object pio/CMakeFiles/pio.dir/pionfput_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pionfput_mod.F90 -o CMakeFiles/pio.dir/pionfput_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfatt_mod.mod pio/CMakeFiles/pio.dir/pionfatt_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfwrite_mod.mod pio/CMakeFiles/pio.dir/pionfwrite_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/box_rearrange.mod pio/CMakeFiles/pio.dir/box_rearrange.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build[ 82%] Building Fortran object pio/CMakeFiles/pio.dir/rearrange.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/rearrange.mod pio/CMakeFiles/pio.dir/rearrange.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build[ 85%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfget_mod.mod pio/CMakeFiles/pio.dir/pionfget_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/piodarray.mod pio/CMakeFiles/pio.dir/piodarray.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build[ 87%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pionfput_mod.mod pio/CMakeFiles/pio.dir/pionfput_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.build[ 90%] Building Fortran object pio/CMakeFiles/pio.dir/pio_nf_utils.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils.mod pio/CMakeFiles/pio.dir/pio_nf_utils.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_nf_utils.F90.o.provides.build/usr/local/bin/cmake -E cmake_copy_f90_mod pio/piolib_mod.mod pio/CMakeFiles/pio.dir/piolib_mod.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.build[ 92%] Building Fortran object pio/CMakeFiles/pio.dir/pio.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio.F90 -o CMakeFiles/pio.dir/pio.F90.o/usr/local/bin/cmake -E cmake_copy_f90_mod pio/pio.mod pio/CMakeFiles/pio.dir/pio.mod.stamp Intel/usr/local/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio.F90.o.provides.build[ 95%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.o[ 97%] Building Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.ocd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/mpi/intel18/openmpi-2.0.2/bin/mpif90 -DUSEMPIIO -D_NONETCDF -D_NOUSEMCT -D_PNETCDF -D_USEBOX -I/home/slhdesa/cesm/cime/src/externals/pio1/pio -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/PnetCDF/include -qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O2 -debug minimal -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DCPRINTEL -DHAVE_SLASHPROC -D_PNETCDF -D_NO_MPI_RSEND -I. -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/netcdf/432_inter18/include -I/usr/local/PnetCDF/include -I/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/include -c /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o[100%] Linking Fortran static library libpio.acd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -P CMakeFiles/pio.dir/cmake_clean_target.cmakecd /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pio.dir/link.txt --verbose=1/usr/bin/ar qc libpio.a CMakeFiles/pio.dir/pio.F90.o CMakeFiles/pio.dir/pio_kinds.F90.o CMakeFiles/pio.dir/nf_mod.F90.o CMakeFiles/pio.dir/ionf_mod.F90.o CMakeFiles/pio.dir/pio_types.F90.o CMakeFiles/pio.dir/piolib_mod.F90.o CMakeFiles/pio.dir/pio_mpi_utils.F90.o CMakeFiles/pio.dir/pio_nf_utils.F90.o CMakeFiles/pio.dir/pio_utils.F90.o CMakeFiles/pio.dir/pio_support.F90.o CMakeFiles/pio.dir/calcdisplace_mod.F90.o CMakeFiles/pio.dir/calcdecomp.F90.o CMakeFiles/pio.dir/pio_msg_mod.F90.o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o/usr/bin/ranlib libpio.amake[2]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'[100%] Built target piomake[1]: Leaving directory `/home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1'/usr/local/bin/cmake -E cmake_progress_start /home/slhdesa/cesm/scratch/b.day1.0.25/bld/intel/mpich/nodebug/nothreads/pio/pio1/CMakeFiles 0/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [IOPROC] subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )-----------------------------------------^/home/slhdesa/cesm/cime/src/externals/pio1/pio/piolib_mod.F90(2243): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [NUMIOTASKS] subroutine pio_recommend_iotasks(comm, ioproc, numiotasks, miniotasks, maxiotasks )-------------------------------------------------^ Installing pio version 1
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Example port to centos7 linux system with gcc, netcdf, pnetcdf and mpich using modules from http://www.admin-magazine.com/HPC/Articles/Environment-Modules regex.expression.matching.your.machine LINUX https://howto.get.out intel,gnu mpich,openmpi none $ENV{HOME}/cesm/scratch $ENV{HOME}/cesm/inputdata $ENV{HOME}/cesm/inputdata/lmwg $ENV{HOME}/cesm/archive/$CASE $ENV{HOME}/cesm/cesm_baselines $ENV{HOME}/cesm/tools/cime/tools/cprnc/cprnc make 8 none me@my.address 8 8 FALSE mpiexec -np {{ total_tasks }} mpirun -np {{ total_tasks }} mpirun -hostfile $ENV{PBS_JOBID} -ppn $MAX_MPITASKS_PER_NODE -n {{ total_tasks }} /usr/share/Modules/init/perl.pm /usr/share/Modules/init/python.py /usr/share/Modules/init/csh /usr/share/Modules/init/sh /usr/bin/modulecmd perl /usr/bin/modulecmd python module module intel18/compiler-18 intel18/mpich-3.2 intel18/openmpi-2.0.2 compiler/gnu/8.2.0 mpi/3.3/gcc-8.2.0 tool/netcdf/4.6.1/gcc-8.1.0 256M /usr/local/netcdf/432_inter18 /usr/local/PnetCDF -1