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CESM2 stop running after reading regrid_vegetation.nc

A

agustin@unex_es

Member
I have ported CESM2.1.0 to a computer in Spain with 20 intel nodes, 20 cores each. Compiler is intel2016.  Queue system is slurm. I build up a case with the following command: ./create_newcase --debug --case ../../../B1850C5CN210b_1x1 --compset B1850 --res f09_g16 --run-unsupported --mach login1 --compiler intelWhen I submit the case to que queue system it stop running after a few seconds. The Cesm.log is in the attached file. I have run in this computer a similar compset with CESM1.2.0 without any problem. Any help is wellcome Agustin

 
 
J

jedwards

CSEG and Liaisons
Staff member
No log file attached.  It appears from the above that you are attempting to run an older unsupported compset on an older unsupported grid - are you sure that's what you want to do?
 
A

agustin@unex_es

Member
Hear you have a copy of the cesm log file. The only pourpose of the this simulation is to test whether the compilation run or not. What compset do you advice me to use to test the compilation ?Cheers Agustin Invalid PIO rearranger comm max pend req (comp2io),            0
 Resetting PIO rearranger comm max pend req (comp2io) to           64
 PIO rearranger options:
   comm type     =
 p2p                                                                           
 
   comm fcd      =
 2denable                                                                      
 
   max pend req (comp2io)  =           0
   enable_hs (comp2io)     = T
   enable_isend (comp2io)  = F
   max pend req (io2comp)  =          64
   enable_hs (io2comp)    = F
   enable_isend (io2comp)  = T
(seq_comm_setcomm)  init ID (  1 GLOBAL          ) pelist   =     0   179     1 ( npes =   180) ( nthreads =  1)( suffix =)
(seq_comm_setcomm)  init ID (  2 CPL             ) pelist   =     0   159     1 ( npes =   160) ( nthreads =  1)( suffix =)
(seq_comm_setcomm)  init ID (  5 ATM             ) pelist   =     0   159     1 ( npes =   160) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID (  6 CPLATM          ) join IDs =     2     5       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID (  3 ALLATMID        ) join multiple comp IDs       ( npes =   160) ( nthreads =  1)
(seq_comm_joincomm) init ID (  4 CPLALLATMID     ) join IDs =     2     3       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID (  9 LND             ) pelist   =     0    79     1 ( npes =    80) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 10 CPLLND          ) join IDs =     2     9       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID (  7 ALLLNDID        ) join multiple comp IDs       ( npes =    80) ( nthreads =  1)
(seq_comm_joincomm) init ID (  8 CPLALLLNDID     ) join IDs =     2     7       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 13 ICE             ) pelist   =    80   159     1 ( npes =    80) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 14 CPLICE          ) join IDs =     2    13       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 11 ALLICEID        ) join multiple comp IDs       ( npes =    80) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 12 CPLALLICEID     ) join IDs =     2    11       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 17 OCN             ) pelist   =   160   179     1 ( npes =    20) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 18 CPLOCN          ) join IDs =     2    17       ( npes =   180) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 15 ALLOCNID        ) join multiple comp IDs       ( npes =    20) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 16 CPLALLOCNID     ) join IDs =     2    15       ( npes =   180) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 21 ROF             ) pelist   =     0    79     1 ( npes =    80) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 22 CPLROF          ) join IDs =     2    21       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 19 ALLROFID        ) join multiple comp IDs       ( npes =    80) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 20 CPLALLROFID     ) join IDs =     2    19       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 25 GLC             ) pelist   =     0   159     1 ( npes =   160) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 26 CPLGLC          ) join IDs =     2    25       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 23 ALLGLCID        ) join multiple comp IDs       ( npes =   160) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 24 CPLALLGLCID     ) join IDs =     2    23       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 29 WAV             ) pelist   =     0   159     1 ( npes =   160) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 30 CPLWAV          ) join IDs =     2    29       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 27 ALLWAVID        ) join multiple comp IDs       ( npes =   160) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 28 CPLALLWAVID     ) join IDs =     2    27       ( npes =   160) ( nthreads =  1)
(seq_comm_setcomm)  init ID ( 33 ESP             ) pelist   =     0     0     1 ( npes =     1) ( nthreads =  1)( suffix =)
(seq_comm_joincomm) init ID ( 34 CPLESP          ) join IDs =     2    33       ( npes =   160) ( nthreads =  1)
(seq_comm_jcommarr) init ID ( 31 ALLESPID        ) join multiple comp IDs       ( npes =     1) ( nthreads =  1)
(seq_comm_joincomm) init ID ( 32 CPLALLESPID     ) join IDs =     2    31       ( npes =   160) ( nthreads =  1)
(seq_comm_printcomms)     1     0   180     1  GLOBAL:
(seq_comm_printcomms)     2     0   160     1  CPL:
(seq_comm_printcomms)     3     0   160     1  ALLATMID:
(seq_comm_printcomms)     4     0   160     1  CPLALLATMID:
(seq_comm_printcomms)     5     0   160     1  ATM:
(seq_comm_printcomms)     6     0   160     1  CPLATM:
(seq_comm_printcomms)     7     0    80     1  ALLLNDID:
(seq_comm_printcomms)     8     0   160     1  CPLALLLNDID:
(seq_comm_printcomms)     9     0    80     1  LND:
(seq_comm_printcomms)    10     0   160     1  CPLLND:
(seq_comm_printcomms)    11    80    -1     1  ALLICEID:
(seq_comm_printcomms)    12     0   160     1  CPLALLICEID:
(seq_comm_printcomms)    13    80    -1     1  ICE:
(seq_comm_printcomms)    14     0   160     1  CPLICE:
(seq_comm_printcomms)    15   160    -1     1  ALLOCNID:
(seq_comm_printcomms)    16     0   180     1  CPLALLOCNID:
(seq_comm_printcomms)    17   160    -1     1  OCN:
(seq_comm_printcomms)    18     0   180     1  CPLOCN:
(seq_comm_printcomms)    19     0    80     1  ALLROFID:
(seq_comm_printcomms)    20     0   160     1  CPLALLROFID:
(seq_comm_printcomms)    21     0    80     1  ROF:
(seq_comm_printcomms)    22     0   160     1  CPLROF:
(seq_comm_printcomms)    23     0   160     1  ALLGLCID:
(seq_comm_printcomms)    24     0   160     1  CPLALLGLCID:
(seq_comm_printcomms)    25     0   160     1  GLC:
(seq_comm_printcomms)    26     0   160     1  CPLGLC:
(seq_comm_printcomms)    27     0   160     1  ALLWAVID:
(seq_comm_printcomms)    28     0   160     1  CPLALLWAVID:
(seq_comm_printcomms)    29     0   160     1  WAV:
(seq_comm_printcomms)    30     0   160     1  CPLWAV:
(seq_comm_printcomms)    31     0     1     1  ALLESPID:
(seq_comm_printcomms)    32     0   160     1  CPLALLESPID:
(seq_comm_printcomms)    33     0     1     1  ESP:
(seq_comm_printcomms)    34     0   160     1  CPLESP:
 OCN              : pio_numiotasks =            1
 OCN              : pio_stride =           20
 OCN              : pio_root =            1
 OCN              : pio_iotype =            6
 OCN              : pio_numiotasks =            1
 OCN              : pio_stride =           20
 OCN              : pio_rearranger =            1
 OCN              : pio_root =            1
 OCN              : pio_iotype =            6
 ICE              : pio_numiotasks =            4
 ICE              : pio_stride =           20
 ICE              : pio_root =            1
 ICE              : pio_iotype =            6
 ICE              : pio_numiotasks =            4
 ICE              : pio_stride =           20
 ICE              : pio_rearranger =            1
 ICE              : pio_root =            1
 ICE              : pio_iotype =            6
 (t_initf) Read in prof_inparm namelist from: drv_in
 (t_initf) Using profile_disable=          F
 (t_initf)       profile_timer=                      4
 (t_initf)       profile_depth_limit=                4
 (t_initf)       profile_detail_limit=               2
 (t_initf)       profile_barrier=          F
 (t_initf)       profile_outpe_num=                  1
 (t_initf)       profile_outpe_stride=               0
 (t_initf)       profile_single_file=      F
 (t_initf)       profile_global_stats=     T
 (t_initf)       profile_ovhd_measurement= F
 (t_initf)       profile_add_detail=       F
 (t_initf)       profile_papi_enable=      F
         160 pes participating in computation
 -----------------------------------
 TASK#  NAME
  0  s01r2b10
  1  s01r2b10
  2  s01r2b10
  3  s01r2b10
  4  s01r2b10
  5  s01r2b10
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 37  s01r2b11
 38  s01r2b11
 39  s01r2b11
 40  s01r2b12
 41  s01r2b12
 42  s01r2b12
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 44  s01r2b12
 45  s01r2b12
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 49  s01r2b12
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 79  s01r2b13
 80  s01r2b14
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100  s01r2b15
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145  s01r2b17
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149  s01r2b17
150  s01r2b17
151  s01r2b17
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153  s01r2b17
154  s01r2b17
155  s01r2b17
156  s01r2b17
157  s01r2b17
158  s01r2b17
159  s01r2b17
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/inic/fv/cami-mam3_0000-01-01_0.9x1.25_L32_c141031.nc       65536
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/topo/fv_0.9x1.25_nc3000_Nsw042_Nrs008_Co060_Fi001_ZR_sgh30_24km_
 GRNL_c170103.nc      131072
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/ozone_strataero/ozone_strataero_cyclical_WACCM6_L70_CMIP6-piCont
 rol.001_y21-50avg_zm_5day_c180802.nc      196608
 WARNING: Rearr optional argument is a pio2 feature, ignored in pio1
 WARNING: Rearr optional argument is a pio2 feature, ignored in pio1
 WARNING: Rearr optional argument is a pio2 feature, ignored in pio1
 WARNING: Rearr optional argument is a pio2 feature, ignored in pio1
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 WARNING: Rearr optional argument is a pio2 feature, ignored in pio1
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Variable not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_sig1.6_dgnh.48_c140304.nc
      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/mam4_mode2_rrtmg_aitkendust_c141106.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_sig1.2_dgnl.40_c150219.nc
      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode1_c170214.nc
      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode2_c170214.nc
      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.2_mode3_c170214.nc
      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/physprops/ssam_rrtmg_c100508.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/solar/SolarForcingCMIP6piControl_c160921.nc      196608
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/solar/SolarForcingCMIP6piControl_c160921.nc      196608
 NetCDF: Variable not found

l, cnst_name(l), cnst_name_cw(l)
   1  Q                                    
   2  CLDLIQ                               
   3  CLDICE                               
   4  NUMLIQ                               
   5  NUMICE                               
   6  RAINQM                               
   7  SNOWQM                               
   8  NUMRAI                               
   9  NUMSNO                               
  10  H2O2                                 
  11  H2SO4                                
  12  SO2                                  
  13  DMS                                  
  14  SOAG                                 
  15  so4_a1            so4_c1             
  16  pom_a1            pom_c1             
  17  soa_a1            soa_c1             
  18  bc_a1             bc_c1              
  19  dst_a1            dst_c1             
  20  ncl_a1            ncl_c1             
  21  num_a1            num_c1             
  22  so4_a2            so4_c2             
  23  dst_a2            dst_c2             
  24  soa_a2            soa_c2             
  25  ncl_a2            ncl_c2             
  26  num_a2            num_c2             
  27  dst_a3            dst_c3             
  28  ncl_a3            ncl_c3             
  29  so4_a3            so4_c3             
  30  num_a3            num_c3             
  31  pom_a4            pom_c4             
  32  bc_a4             bc_c4              
  33  num_a4            num_c4             
  34  CO2_OCN                              
  35  CO2_FFF                              
  36  CO2_LND                              
  37  CO2                                  
calcsize addfld - num_a1_sfcsiz1            
calcsize addfld - num_a1_sfcsiz2            
calcsize addfld - num_c1_sfcsiz1            
calcsize addfld - num_c1_sfcsiz2            
calcsize addfld - num_a2_sfcsiz1            
calcsize addfld - num_a2_sfcsiz2            
calcsize addfld - num_c2_sfcsiz1            
calcsize addfld - num_c2_sfcsiz2            
calcsize addfld - num_a3_sfcsiz1            
calcsize addfld - num_a3_sfcsiz2            
calcsize addfld - num_c3_sfcsiz1            
calcsize addfld - num_c3_sfcsiz2            
calcsize addfld - num_a4_sfcsiz1            
calcsize addfld - num_a4_sfcsiz2            
calcsize addfld - num_c4_sfcsiz1            
calcsize addfld - num_c4_sfcsiz2            
calcsize addfld - num_a2_sfcsiz3            
calcsize addfld - num_a1_sfcsiz3            
calcsize addfld - num_a2_sfcsiz4            
calcsize addfld - num_a1_sfcsiz4            
calcsize addfld - num_c2_sfcsiz3            
calcsize addfld - num_c1_sfcsiz3            
calcsize addfld - num_c2_sfcsiz4            
calcsize addfld - num_c1_sfcsiz4            
calcsize addfld - so4_a2_sfcsiz3            
calcsize addfld - so4_a1_sfcsiz3            
calcsize addfld - so4_a2_sfcsiz4            
calcsize addfld - so4_a1_sfcsiz4            
calcsize addfld - so4_c2_sfcsiz3            
calcsize addfld - so4_c1_sfcsiz3            
calcsize addfld - so4_c2_sfcsiz4            
calcsize addfld - so4_c1_sfcsiz4            
calcsize addfld - soa_a2_sfcsiz3            
calcsize addfld - soa_a1_sfcsiz3            
calcsize addfld - soa_a2_sfcsiz4            
calcsize addfld - soa_a1_sfcsiz4            
calcsize addfld - soa_c2_sfcsiz3            
calcsize addfld - soa_c1_sfcsiz3            
calcsize addfld - soa_c2_sfcsiz4            
calcsize addfld - soa_c1_sfcsiz4            
calcsize addfld - ncl_a2_sfcsiz3            
calcsize addfld - ncl_a1_sfcsiz3            
calcsize addfld - ncl_a2_sfcsiz4            
calcsize addfld - ncl_a1_sfcsiz4            
calcsize addfld - ncl_c2_sfcsiz3            
calcsize addfld - ncl_c1_sfcsiz3            
calcsize addfld - ncl_c2_sfcsiz4            
calcsize addfld - ncl_c1_sfcsiz4            
calcsize addfld - dst_a2_sfcsiz3            
calcsize addfld - dst_a1_sfcsiz3            
calcsize addfld - dst_a2_sfcsiz4            
calcsize addfld - dst_a1_sfcsiz4            
calcsize addfld - dst_c2_sfcsiz3            
calcsize addfld - dst_c1_sfcsiz3            
calcsize addfld - dst_c2_sfcsiz4            
calcsize addfld - dst_c1_sfcsiz4            

subr. modal_aero_gasaerexch_init - primary carbon aging pointers
pair  1     mode  4 ---> mode  1
     spec 33=num_a4           ---> spec 21=num_a1         
     spec 31=pom_a4           ---> spec 16=pom_a1         
     spec 32=bc_a4            ---> spec 18=bc_a1          
 
qconff addfld   qconff_gaex                   kg/kg/s
qevapff addfld   qevapff_gaex                  kg/kg/s
qconbb addfld   qconbb_gaex                   kg/kg/s
qevapbb addfld   qevapbb_gaex                  kg/kg/s
qconbg addfld   qconbg_gaex                   kg/kg/s
qevapbg addfld   qevapbg_gaex                  kg/kg/s
qcon addfld   qcon_gaex                     kg/kg/s
qevap addfld   qevap_gaex                    kg/kg/s
gasaerexch addfld   H2SO4_sfgaex1                 kg/m2/s
gasaerexch addfld   SOAG_sfgaex1                  kg/m2/s
gasaerexch addfld   so4_a1_sfgaex1                kg/m2/s
gasaerexch addfld   pom_a1_sfgaex1                kg/m2/s
gasaerexch addfld   soa_a1_sfgaex1                kg/m2/s
gasaerexch addfld   bc_a1_sfgaex1                 kg/m2/s
gasaerexch addfld   num_a1_sfgaex1                kg/m2/s
gasaerexch addfld   so4_a2_sfgaex1                kg/m2/s
gasaerexch addfld   soa_a2_sfgaex1                kg/m2/s
gasaerexch addfld   so4_a3_sfgaex1                kg/m2/s
gasaerexch addfld   pom_a4_sfgaex1                kg/m2/s
gasaerexch addfld   bc_a4_sfgaex1                 kg/m2/s
gasaerexch addfld   num_a4_sfgaex1                kg/m2/s
gasaerexch addfld   so4_a1_sfgaex2                kg/m2/s
gasaerexch addfld   so4_c1_sfgaex2                kg/m2/s
gasaerexch addfld   soa_a1_sfgaex2                kg/m2/s
gasaerexch addfld   soa_c1_sfgaex2                kg/m2/s
gasaerexch addfld   dst_a1_sfgaex2                kg/m2/s
gasaerexch addfld   dst_c1_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_a1_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_c1_sfgaex2                kg/m2/s
gasaerexch addfld   num_a1_sfgaex2                #/m2/s 
gasaerexch addfld   num_c1_sfgaex2                #/m2/s 
gasaerexch addfld   so4_a2_sfgaex2                kg/m2/s
gasaerexch addfld   so4_c2_sfgaex2                kg/m2/s
gasaerexch addfld   dst_a2_sfgaex2                kg/m2/s
gasaerexch addfld   dst_c2_sfgaex2                kg/m2/s
gasaerexch addfld   soa_a2_sfgaex2                kg/m2/s
gasaerexch addfld   soa_c2_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_a2_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_c2_sfgaex2                kg/m2/s
gasaerexch addfld   num_a2_sfgaex2                #/m2/s 
gasaerexch addfld   num_c2_sfgaex2                #/m2/s 
gasaerexch addfld   dst_a3_sfgaex2                kg/m2/s
gasaerexch addfld   dst_c3_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_a3_sfgaex2                kg/m2/s
gasaerexch addfld   ncl_c3_sfgaex2                kg/m2/s
gasaerexch addfld   so4_a3_sfgaex2                kg/m2/s
gasaerexch addfld   so4_c3_sfgaex2                kg/m2/s
gasaerexch addfld   num_a3_sfgaex2                #/m2/s 
gasaerexch addfld   num_c3_sfgaex2                #/m2/s 

subr. modal_aero_coag_init
pair  1     mode  2 ---> mode  1   eff  1
     spec 22=so4_a2           ---> spec 15=so4_a1         
     spec 24=soa_a2           ---> spec 17=soa_a1         
     spec 25=ncl_a2           ---> spec 20=ncl_a1         
     spec 23=dst_a2           ---> spec 19=dst_a1         
pair  2     mode  4 ---> mode  1   eff  1
     spec 31=pom_a4           ---> spec 16=pom_a1         
     spec 32=bc_a4            ---> spec 18=bc_a1          
pair  3     mode  2 ---> mode  4   eff  1
     spec 22=so4_a2           ---> spec 15=so4_a1         
     spec 24=soa_a2           ---> spec 17=soa_a1         
     spec 25=ncl_a2           ---> spec 20=ncl_a1         
     spec 23=dst_a2           ---> spec 19=dst_a1         
 
modal_aero_coag_init addfld  so4_a1_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  pom_a1_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  soa_a1_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  bc_a1_sfcoag1                kg/m2/s
modal_aero_coag_init addfld  dst_a1_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  ncl_a1_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  num_a1_sfcoag1               #/m2/s 
modal_aero_coag_init addfld  so4_a2_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  dst_a2_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  soa_a2_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  ncl_a2_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  num_a2_sfcoag1               #/m2/s 
modal_aero_coag_init addfld  pom_a4_sfcoag1               kg/m2/s
modal_aero_coag_init addfld  bc_a4_sfcoag1                kg/m2/s
modal_aero_coag_init addfld  num_a4_sfcoag1               #/m2/s 
modal_aero_newnuc_init addfld  H2SO4_sfnnuc1                kg/m2/s
modal_aero_newnuc_init addfld  so4_a2_sfnnuc1               kg/m2/s
modal_aero_newnuc_init addfld  num_a2_sfnnuc1               #/m2/s 
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/dst/dst_source2x2tunedcam6-2x2-04062017.nc      262144
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/tracer_cnst/tracer_cnst_WACCM6_halons_3DmonthlyL70_1850climoCMIP
 6piControl001_y21-50avg_c180802.nc      327680
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_DMS_bb_surfa
 ce_1750-2015_0.9x1.25_c20170322.nc      393216
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_DMS_bb_surfa
 ce_1750-2015_0.9x1.25_c20170322.nc      393216
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_DMS_other_su
 rface_1750-2015_0.9x1.25_c20170322.nc      458752
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_DMS_other_su
 rface_1750-2015_0.9x1.25_c20170322.nc      458752
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_anthro-a
 g-ship-res_surface_1750-2015_0.9x1.25_c20170616.nc      524288
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_anthro-a
 g-ship-res_surface_1750-2015_0.9x1.25_c20170616.nc      524288
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_anthro-e
 ne_surface_1750-2015_0.9x1.25_c20170616.nc      589824
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_anthro-e
 ne_surface_1750-2015_0.9x1.25_c20170616.nc      589824
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_bb_surfa
 ce_1750-2015_0.9x1.25_c20170322.nc      655360
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_bb_surfa
 ce_1750-2015_0.9x1.25_c20170322.nc      655360
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_ant
 hro_surface_1750-2015_0.9x1.25_c20170608.nc      720896
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_ant
 hro_surface_1750-2015_0.9x1.25_c20170608.nc      720896
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_bb_
 surface_1750-2015_0.9x1.25_c20170322.nc      786432
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_bb_
 surface_1750-2015_0.9x1.25_c20170322.nc      786432
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_bio
 genic_surface_1750-2015_0.9x1.25_c20170322.nc      851968
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SOAGx1.5_bio
 genic_surface_1750-2015_0.9x1.25_c20170322.nc      851968
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_bc_a4_anthro
 _surface_1750-2015_0.9x1.25_c20170608.nc      917504
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_bc_a4_anthro
 _surface_1750-2015_0.9x1.25_c20170608.nc      917504
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_bc_a4_bb_sur
 face_1750-2015_0.9x1.25_c20170322.nc      983040
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_bc_a4_bb_sur
 face_1750-2015_0.9x1.25_c20170322.nc      983040
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_bc_a4_an
 thro_surface_1750-2015_0.9x1.25_c20170608.nc     1048576
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_bc_a4_an
 thro_surface_1750-2015_0.9x1.25_c20170608.nc     1048576
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_bc_a4_bb
 _surface_1750-2015_0.9x1.25_c20170322.nc     1114112
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_bc_a4_bb
 _surface_1750-2015_0.9x1.25_c20170322.nc     1114112
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_pom_a4_a
 nthro_surface_1750-2015_0.9x1.25_c20170608.nc     1179648
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_pom_a4_a
 nthro_surface_1750-2015_0.9x1.25_c20170608.nc     1179648
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_pom_a4_b
 b_surface_1750-2015_0.9x1.25_c20170509.nc     1245184
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_pom_a4_b
 b_surface_1750-2015_0.9x1.25_c20170509.nc     1245184
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_a
 nthro-ag-ship_surface_1750-2015_0.9x1.25_c20170616.nc     1310720
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_a
 nthro-ag-ship_surface_1750-2015_0.9x1.25_c20170616.nc     1310720
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_b
 b_surface_1750-2015_0.9x1.25_c20170322.nc     1376256
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_b
 b_surface_1750-2015_0.9x1.25_c20170322.nc     1376256
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a2_a
 nthro-res_surface_1750-2015_0.9x1.25_c20170616.nc     1441792
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a2_a
 nthro-res_surface_1750-2015_0.9x1.25_c20170616.nc     1441792
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_pom_a4_anthr
 o_surface_1750-2015_0.9x1.25_c20170608.nc     1507328
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_pom_a4_anthr
 o_surface_1750-2015_0.9x1.25_c20170608.nc     1507328
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_pom_a4_bb_su
 rface_1750-2015_0.9x1.25_c20170322.nc     1572864
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_pom_a4_bb_su
 rface_1750-2015_0.9x1.25_c20170322.nc     1572864
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_anthr
 o-ag-ship_surface_1750-2015_0.9x1.25_c20170616.nc     1638400
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_anthr
 o-ag-ship_surface_1750-2015_0.9x1.25_c20170616.nc     1638400
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_bb_su
 rface_1750-2015_0.9x1.25_c20170322.nc     1703936
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_bb_su
 rface_1750-2015_0.9x1.25_c20170322.nc     1703936
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a2_anthr
 o-res_surface_1750-2015_0.9x1.25_c20170616.nc     1769472
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a2_anthr
 o-res_surface_1750-2015_0.9x1.25_c20170616.nc     1769472
 NetCDF: Variable not found
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_contvolc
 ano_vertical_850-5000_0.9x1.25_c20170724.nc     1835008
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_SO2_contvolc
 ano_vertical_850-5000_0.9x1.25_c20170724.nc     1835008
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_a1_so4_c
 ontvolcano_vertical_850-5000_0.9x1.25_c20170724.nc     1900544
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_a1_so4_c
 ontvolcano_vertical_850-5000_0.9x1.25_c20170724.nc     1900544
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_a2_so4_c
 ontvolcano_vertical_850-5000_0.9x1.25_c20170724.nc     1966080
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_a2_so4_c
 ontvolcano_vertical_850-5000_0.9x1.25_c20170724.nc     1966080
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_a
 nthro-ene_vertical_1750-2015_0.9x1.25_c20170616.nc     2031616
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_num_so4_a1_a
 nthro-ene_vertical_1750-2015_0.9x1.25_c20170616.nc     2031616
 NetCDF: Variable not found
 NetCDF: Variable not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_anthr
 o-ene_vertical_1750-2015_0.9x1.25_c20170616.nc     2097152
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_anthr
 o-ene_vertical_1750-2015_0.9x1.25_c20170616.nc     2097152
 NetCDF: Variable not found
 NetCDF: Variable not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_contv
 olcano_vertical_850-5000_0.9x1.25_c20170724.nc     2162688
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a1_contv
 olcano_vertical_850-5000_0.9x1.25_c20170724.nc     2162688
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a2_contv
 olcano_vertical_850-5000_0.9x1.25_c20170724.nc     2228224
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/CMIP6_emissions_1750_2015/emissions-cmip6_so4_a2_contv
 olcano_vertical_850-5000_0.9x1.25_c20170724.nc     2228224
 NetCDF: Variable not found
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/elev/H2O_emission_CH4_oxidationx2_elev_3DmonthlyL70_18
 50climoCMIP6piControl001_y21-50avg_c180802.nc     2293760
 NetCDF: Attribute not found
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/emis/elev/H2O_emission_CH4_oxidationx2_elev_3DmonthlyL70_18
 50climoCMIP6piControl001_y21-50avg_c180802.nc     2293760
 NetCDF: Invalid dimension ID or name
 Opened existing file
 /lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
 utdata/atm/cam/chem/trop_mozart/dvel/regrid_vegetation.nc     2359296
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source            
cesm.exe           0000000003137695  Unknown               Unknown  Unknown
cesm.exe           0000000003135457  Unknown               Unknown  Unknown
cesm.exe           00000000030C46B4  Unknown               Unknown  Unknown
cesm.exe           00000000030C44C6  Unknown               Unknown  Unknown
cesm.exe           00000000030430F6  Unknown               Unknown  Unknown
cesm.exe           000000000304DC90  Unknown               Unknown  Unknown
libpthread.so.0    00007F4B9BD91B10  Unknown               Unknown  Unknown
cesm.exe           00000000012B5CFA  mo_drydep_mp_inte        2320  mo_drydep.F90
cesm.exe           00000000012B2C92  mo_drydep_mp_dvel        1927  mo_drydep.F90
cesm.exe           0000000001294530  mo_chemini_mp_che         188  mo_chemini.F90
cesm.exe           00000000010ECFA4  chemistry_mp_chem         888  chemistry.F90
cesm.exe           00000000006CB572  physpkg_mp_phys_i         822  physpkg.F90
cesm.exe           00000000004F610C  cam_comp_mp_cam_i         201  cam_comp.F90
cesm.exe           00000000004EDD0A  atm_comp_mct_mp_a         209  atm_comp_mct.F90
cesm.exe           0000000000434046  component_mod_mp_         267  component_mod.F90
cesm.exe           000000000042309B  cime_comp_mod_mp_        1226  cime_comp_mod.F90
cesm.exe           0000000000431209  MAIN__                    114  cime_driver.F90
cesm.exe           0000000000414A7E  Unknown               Unknown  Unknown
libc.so.6          00007F4B9B7016E5  Unknown               Unknown  Unknown
cesm.exe           0000000000414989  Unknown               Unknown  Unknown
 
J

jedwards

CSEG and Liaisons
Staff member
> The only pourpose of the this simulation is to test whether the compilation run or not. What compset do you advice me to use to test the compilation ?
In that case please try B1850 f09_g17 ,  I see now that this is close to what you already have - I was mislead by the case name which suggests something elsebut isn't really relevent.   Check that your ulimit stack size is set to unlimited.   I think that you also need to provide more tasks to the ocn, 20 isn't enough.  But the error is in the atm, it looks to me that you are exceeding the maximum stack size.
 
A

agustin@unex_es

Member
Dear Edward, I agree with you that probably the problem is the stack size limit. The problem is that when I run the cesm1.2 model  I place a command: limit stacksize unlimited in the file that I submit to the queue system. But, now in cesm2 where do I have to place that command ?Thank very muchAgustinI have also try the compset  B1850:  --compset B1850 --res f19_g17, but it also stop running. Follow is some of the cesm.log (init_tidal_mixing1) reg num, REGION_BOX3D, i,j,k,iblock,lat,lonRoss Sea   3   2  41 355  48   1      63.75    356.95
 (init_tidal_mixing1) reg num, REGION_BOX3D, i,j,k,iblock,lat,lonRoss Sea   3   2  42 355  48   1      63.90    357.83
 (init_tidal_mixing1) reg num, REGION_BOX3D, i,j,k,iblock,lat,lonRoss Sea   3   2  40 356  48   1      64.01    355.71
 (init_tidal_mixing1) reg num, REGION_BOX3D, i,j,k,iblock,lat,lonRoss Sea   3   2  40 356  49   1      64.01    355.71
  after REGION_BOX3D print test
 Done setting default values!
 NetCDF: Variable not found
 NetCDF: Variable not found
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source
cesm.exe           0000000002FFB055  Unknown               Unknown  Unknown
cesm.exe           0000000002FF8E17  Unknown               Unknown  Unknown
cesm.exe           0000000002F88074  Unknown               Unknown  Unknown
cesm.exe           0000000002F87E86  Unknown               Unknown  Unknown
cesm.exe           0000000002F06AB6  Unknown               Unknown  Unknown
cesm.exe           0000000002F11650  Unknown               Unknown  Unknown
libpthread.so.0    00007FF10EDFEB10  Unknown               Unknown  Unknown
cesm.exe           0000000002452FC4  passive_tracers_m         473  passive_tracers.F90
cesm.exe           00000000023E1F87  initial_mp_pop_in         501  initial.F90
cesm.exe           00000000022310D6  pop_initmod_mp_po         162  POP_InitMod.F90
cesm.exe           0000000002108827  ocn_comp_mct_mp_o         288  ocn_comp_mct.F90
cesm.exe           0000000000434046  component_mod_mp_         267  component_mod.F90
cesm.exe           0000000000423236  cime_comp_mod_mp_        1244  cime_comp_mod.F90
cesm.exe           0000000000431209  MAIN__                    114  cime_driver.F90
cesm.exe           0000000000414A7E  Unknown               Unknown  Unknown
libc.so.6          00007FF10E76E6E5  Unknown               Unknown  Unknown
cesm.exe           0000000000414989  Unknown               Unknown  Unknown

 
 
A

agustin@unex_es

Member
Hi Edward, problem solved. Effectively the problem was the  stack size limit. I have placed the command to unlimit the stack size in my .bashrc and now it run Thank very much Agustin
 
lvxin

lvxin

lvxin
New Member
jedwards said:
> The only pourpose of the this simulation is to test whether the compilation run or not. What compset do you advice me to use to test the compilation ?
In that case please try B1850 f09_g17 , I see now that this is close to what you already have - I was mislead by the case name which suggests something elsebut isn't really relevent. Check that your ulimit stack size is set to unlimited. I think that you also need to provide more tasks to the ocn, 20 isn't enough. But the error is in the atm, it looks to me that you are exceeding the maximum stack size.
Click to expand...
I meet the same problem in CESM2.1.3 when I use CAM model, and my OMP_STACKSIZE sets to 256M. Do I need to modify the variable?
Below is my log file:

Invalid PIO rearranger comm max pend req (comp2io), 0
Resetting PIO rearranger comm max pend req (comp2io) to 64
PIO rearranger options:
comm type =
p2p
comm fcd =
2denable
max pend req (comp2io) = 0
enable_hs (comp2io) = T
enable_isend (comp2io) = F
max pend req (io2comp) = 64
enable_hs (io2comp) = F
enable_isend (io2comp) = T
(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 111 1 ( npes = 112) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 112) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 112) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 112) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 112) ( nthreads = 1)
(seq_comm_printcomms) 1 0 112 1 GLOBAL:
(seq_comm_printcomms) 2 0 112 1 CPL:
(seq_comm_printcomms) 3 0 112 1 ALLATMID:
(seq_comm_printcomms) 4 0 112 1 CPLALLATMID:
(seq_comm_printcomms) 5 0 112 1 ATM:
(seq_comm_printcomms) 6 0 112 1 CPLATM:
(seq_comm_printcomms) 7 0 112 1 ALLLNDID:
(seq_comm_printcomms) 8 0 112 1 CPLALLLNDID:
(seq_comm_printcomms) 9 0 112 1 LND:
(seq_comm_printcomms) 10 0 112 1 CPLLND:
(seq_comm_printcomms) 11 0 112 1 ALLICEID:
(seq_comm_printcomms) 12 0 112 1 CPLALLICEID:
(seq_comm_printcomms) 13 0 112 1 ICE:
(seq_comm_printcomms) 14 0 112 1 CPLICE:
(seq_comm_printcomms) 15 0 112 1 ALLOCNID:
(seq_comm_printcomms) 16 0 112 1 CPLALLOCNID:
(seq_comm_printcomms) 17 0 112 1 OCN:
(seq_comm_printcomms) 18 0 112 1 CPLOCN:
(seq_comm_printcomms) 19 0 112 1 ALLROFID:
(seq_comm_printcomms) 20 0 112 1 CPLALLROFID:
(seq_comm_printcomms) 21 0 112 1 ROF:
(seq_comm_printcomms) 22 0 112 1 CPLROF:
(seq_comm_printcomms) 23 0 112 1 ALLGLCID:
(seq_comm_printcomms) 24 0 112 1 CPLALLGLCID:
(seq_comm_printcomms) 25 0 112 1 GLC:
(seq_comm_printcomms) 26 0 112 1 CPLGLC:
(seq_comm_printcomms) 27 0 112 1 ALLWAVID:
(seq_comm_printcomms) 28 0 112 1 CPLALLWAVID:
(seq_comm_printcomms) 29 0 112 1 WAV:
(seq_comm_printcomms) 30 0 112 1 CPLWAV:
(seq_comm_printcomms) 31 0 1 1 ALLESPID:
(seq_comm_printcomms) 32 0 112 1 CPLALLESPID:
(seq_comm_printcomms) 33 0 1 1 ESP:
(seq_comm_printcomms) 34 0 112 1 CPLESP:
(t_initf) Read in prof_inparm namelist from: drv_in
(t_initf) Using profile_disable= F
(t_initf) profile_timer= 4
(t_initf) profile_depth_limit= 4
(t_initf) profile_detail_limit= 2
(t_initf) profile_barrier= F
(t_initf) profile_outpe_num= 1
(t_initf) profile_outpe_stride= 0
(t_initf) profile_single_file= F
(t_initf) profile_global_stats= T
(t_initf) profile_ovhd_measurement= F
(t_initf) profile_add_detail= F
(t_initf) profile_papi_enable= F
112 pes participating in computation
-----------------------------------
TASK# NAME
0 c07n12
1 c07n12
2 c07n12
3 c07n12
4 c07n12
5 c07n12
6 c07n12
7 c07n12
8 c07n12
9 c07n12
10 c07n12
11 c07n12
12 c07n12
13 c07n12
14 c07n12
15 c07n12
16 c07n12
17 c07n12
18 c07n12
19 c07n12
20 c07n12
21 c07n12
22 c07n12
23 c07n12
24 c07n12
25 c07n12
26 c07n12
27 c07n12
28 c08n11
29 c08n11
30 c08n11
31 c08n11
32 c08n11
33 c08n11
34 c08n11
35 c08n11
36 c08n11
37 c08n11
38 c08n11
39 c08n11
40 c08n11
41 c08n11
42 c08n11
43 c08n11
44 c08n11
45 c08n11
46 c08n11
47 c08n11
48 c08n11
49 c08n11
50 c08n11
51 c08n11
52 c08n11
53 c08n11
54 c08n11
55 c08n11
56 c07n12
57 c07n12
58 c07n12
59 c07n12
60 c07n12
61 c07n12
62 c07n12
63 c07n12
64 c07n12
65 c07n12
66 c07n12
67 c07n12
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Opened existing file
/inputdata/atm/cam/inic/fv/f.e20.FCHIST.f09_f09_mg17.cesm2_0_rel.emis_fix.001.cam.i.1996-01-01-00000_c180716.nc
65536
Opened existing file
/inputdata/atm/cam/topo/fv_0.9x1.25_nc3000_Nsw042_Nrs008_Co060_Fi001_ZR_sgh30_24km_GRNL_c170103.nc
131072
Opened existing file
/inputdata/atm/waccm/lb/LBC_1750-2014_CMIP6_0p5degLat_c170126.nc
196608
NetCDF: Variable not found
NetCDF: Variable not found
NetCDF: Variable not found
NetCDF: Variable not found
 
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