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Data not importing during case build

K

klr324@psu_edu

New Member
Hello,I'm porting cesm 1.0.3 on a machine at Penn State. I followed the users guide by setting up the machine with a generic linux intel option with res f19_g16 and compset X. The model successfully builds, yet when I run the test the model fails. I get the following error:(shr_mct_sMatPInitnc) Initializing SparseMatrixPlus(shr_mct_sMatPInitnc) map weight filename map_fv1.9x2.5_to_gx1v6_aave_da_090206.nc(shr_mct_sMatPInitnc) SmatP maptype X(shr_mct_sMatReaddnc) reading mapping matrix data decomposed...(shr_mct_sMatReaddnc) * file name                  : map_fv1.9x2.5_to_gx1v6_aave_da_090206.nc(shr_mct_sMatReaddnc) No such file or directoryThis error occurs after the presitage completes and a lot of the initialization output is generated. I tried using check_input_data to download the missing dataset, but nothing downloads. The "cpl.input_data_list" seems to have nothing in it.[klr324@comp-int-01 test1]$ ./check_input_data -inputdata /storage/group/kzk10_collab/cesm/inputdata -checkInput Data List Files Found:./Buildconf/cpl.input_data_list[klr324@comp-int-01 test1]$ ./check_input_data -inputdata /storage/group/kzk10_collab/cesm/inputdata -exportInput Data List Files Found:./Buildconf/cpl.input_data_listI would appreciate any help.Thanks! 
 
K

klr324@psu_edu

New Member
Problem solved, however, I now have a new issue. Apparently, the files to run the X compset have to be downloaded from the server with the code: svn co https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/cpl/cpl6. This should be added to the users guide, since this is an important step in porting the model to a new machine.The new issue is that I don't know if the test run actually finished running. The output file looks like it finished, but it ends with an error. Is the output below how the test output file should look like?I would appreciate any help.Thanks.Warning: no access to tty (Bad file descriptor).Thus no job control in this shell.OMP_NUM_THREADS=1PBS_MOMPORT=15003CCSM_COMPSET=X_PRESENT_DAY (X)COMP_ATM=xatmCOMP_LND=xlndCOMP_ICE=xiceCOMP_GLC=xglcCOMP_OCN=xocnCOMP_CPL=cplCCSM_LCOMPSET=X_PRESENT_DAYCCSM_SCOMPSET=XCOMP_RUN_BARRIERS=FALSECOMP_INTERFACE=MCTBUILD_COMPLETE=TRUESMP_BUILD=a0l0i0o0g0c0SMP_VALUE=a0l0i0o0g0c0------------------------------------------------------------------------- CCSM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /storage/group/kzk10_collab/cesm/cesm1_0_3/scratchroot/test1/test1/run - Create modelio namelist input files CCSM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY------------------------------------------------------------------------- CCSM PRESTAGE SCRIPT STARTING - CCSM input data directory, DIN_LOC_ROOT_CSMDATA, is /storage/group/kzk10_collab/cesm/inputdata - Case input data directory, DIN_LOC_ROOT, is /storage/group/kzk10_collab/cesm/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CCSM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLYFri Oct  7 14:49:41 EDT 2016 -- CSM EXECUTION BEGINS HEREFri Oct  7 14:50:01 EDT 2016 -- CSM EXECUTION HAS FINISHED(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============cp: No match.Archiving ccsm output to /storage/group/kzk10_collab/cesm/cesm1_0_3/scratchroot/test1/test1/../archive/test1Calling the short-term archiving script st_archive.sh st_archive.sh: start of short-term archivingst_archive.sh: restart files from end of run will be saved,               interim restart files will be deletedst_archive.sh: short-term archiving completed successfullymv: cannot stat `/storage/group/kzk10_collab/cesm/cesm1_0_3/scripts/test1/timing/ccsm_timing.test1.161007-144915': No such file or directory  
 
K

klr324@psu_edu

New Member
Problem solved, however, I now have a new issue. Apparently, the files to run the X compset have to be downloaded from the server with the code: svn co https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/cpl/cpl6. This should be added to the users guide, since this is an important step in porting the model to a new machine.The new issue is that I don't know if the test run actually finished running. The output file looks like it finished, but it ends with an error. Is the output below how the test output file should look like?I would appreciate any help.Thanks.Warning: no access to tty (Bad file descriptor).Thus no job control in this shell.OMP_NUM_THREADS=1PBS_MOMPORT=15003CCSM_COMPSET=X_PRESENT_DAY (X)COMP_ATM=xatmCOMP_LND=xlndCOMP_ICE=xiceCOMP_GLC=xglcCOMP_OCN=xocnCOMP_CPL=cplCCSM_LCOMPSET=X_PRESENT_DAYCCSM_SCOMPSET=XCOMP_RUN_BARRIERS=FALSECOMP_INTERFACE=MCTBUILD_COMPLETE=TRUESMP_BUILD=a0l0i0o0g0c0SMP_VALUE=a0l0i0o0g0c0------------------------------------------------------------------------- CCSM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /storage/group/kzk10_collab/cesm/cesm1_0_3/scratchroot/test1/test1/run - Create modelio namelist input files CCSM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY------------------------------------------------------------------------- CCSM PRESTAGE SCRIPT STARTING - CCSM input data directory, DIN_LOC_ROOT_CSMDATA, is /storage/group/kzk10_collab/cesm/inputdata - Case input data directory, DIN_LOC_ROOT, is /storage/group/kzk10_collab/cesm/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CCSM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLYFri Oct  7 14:49:41 EDT 2016 -- CSM EXECUTION BEGINS HEREFri Oct  7 14:50:01 EDT 2016 -- CSM EXECUTION HAS FINISHED(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============cp: No match.Archiving ccsm output to /storage/group/kzk10_collab/cesm/cesm1_0_3/scratchroot/test1/test1/../archive/test1Calling the short-term archiving script st_archive.sh st_archive.sh: start of short-term archivingst_archive.sh: restart files from end of run will be saved,               interim restart files will be deletedst_archive.sh: short-term archiving completed successfullymv: cannot stat `/storage/group/kzk10_collab/cesm/cesm1_0_3/scripts/test1/timing/ccsm_timing.test1.161007-144915': No such file or directory  
 
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