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Encountered an error in CESM2.0

B

bearzz

熊峰
New Member
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by MCT configure 2.8, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ /g9/weiww/cesm/CESM/cime/src/externals/mct/configure CC=mpicc FC=mpifort MPICC=mpicc MPIFC=mpifort FCFLAGS=-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -O2 -ffree-form -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include CPPDEFS= -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC CFLAGS=-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include LDFLAGS=-L/g9/weiww/local/hdf5-1.13.0/lib -L/g9/weiww/local/netcdf-4.5.4:/g1/app/mathlib/netcdf/3.6.3/intel/lib -L/lib -L/g9/weiww/local/openmpi-4.1.1//lib -lnetcdff -llapack -lblas NETCDF_PATH=/g9/weiww/local/netcdf-4.5.4 --srcdir /g9/weiww/cesm/CESM/cime/src/externals/mct
## --------- ##
## Platform. #
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2360: checking for C compiler version
configure:2369: mpicc --version >&5
gcc (GCC) 9.5.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2380: $? = 0
configure:2369: mpicc -v >&5
Using built-in specs.
COLLECT_GCC=/g9/weiww/local/gcc-9.5.0/bin/gcc
COLLECT_LTO_WRAPPER=/g9/weiww/local/gcc-9.5.0/libexec/gcc/x86_64-pc-linux-gnu/9.5.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../configure --prefix=/g9/weiww/local/gcc-9.5.0 --enable-checking=release --enable-languages=c,c++,fortran --disable-multilib
Thread model: posix
gcc version 9.5.0 (GCC)
configure:2380: $? = 0
configure:2369: mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2380: $? = 1
configure:2369: mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:2380: $? = 1
configure:2400: checking whether the C compiler works
configure:2422: mpicc -std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -L/g9/weiww/local/hdf5-1.13.0/lib -L/g9/weiww/local/netcdf-4.5.4:/g1/app/mathlib/netcdf/3.6.3/intel/lib -L/lib -L/g9/weiww/local/openmpi-4.1.1//lib -lnetcdff -llapack -lblas conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz >&5
/usr/bin/ld: cannot find -lnetcdff
/usr/bin/ld: cannot find -lnetcdf
collect2: error: ld returned 1 exit status
configure:2426: $? = 1
configure:2464: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:2469: error: in `/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct':
configure:2471: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_env_AR_set=
ac_cv_env_AR_value=
ac_cv_env_BABELROOT_set=
ac_cv_env_BABELROOT_value=
ac_cv_env_BIT64_set=
ac_cv_env_BIT64_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=mpicc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
ac_cv_env_COMPILER_ROOT_set=
ac_cv_env_COMPILER_ROOT_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_DEBUG_set=set
ac_cv_env_DEBUG_value=FALSE
ac_cv_env_ENDIAN_set=
ac_cv_env_ENDIAN_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -O2 -ffree-form -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
## ----------------- ##
## Output variables. ##
## ----------------- ##
AR=''
BABELROOT=''
BIT64=''
CC='mpicc'
CFLAGS='-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
COMPILER_ROOT=''
CPP=''
CPPDEFS=' -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC'
CPPFLAGS=''
CRULE=''
DEBUG='FALSE'
DEFS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENDIAN=''
EXEEXT=''
FC='mpifort'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "MCT"
#define PACKAGE_TARNAME "mct"
#define PACKAGE_VERSION "2.8"
#define PACKAGE_STRING "MCT 2.8"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
configure: exit 77
 
B

bearzz

熊峰
New Member
bearzz said:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by MCT configure 2.8, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ /g9/weiww/cesm/CESM/cime/src/externals/mct/configure CC=mpicc FC=mpifort MPICC=mpicc MPIFC=mpifort FCFLAGS=-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -O2 -ffree-form -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include CPPDEFS= -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC CFLAGS=-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include LDFLAGS=-L/g9/weiww/local/hdf5-1.13.0/lib -L/g9/weiww/local/netcdf-4.5.4:/g1/app/mathlib/netcdf/3.6.3/intel/lib -L/lib -L/g9/weiww/local/openmpi-4.1.1//lib -lnetcdff -llapack -lblas NETCDF_PATH=/g9/weiww/local/netcdf-4.5.4 --srcdir /g9/weiww/cesm/CESM/cime/src/externals/mct
## --------- ##
## Platform. #
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2360: checking for C compiler version
configure:2369: mpicc --version >&5
gcc (GCC) 9.5.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2380: $? = 0
configure:2369: mpicc -v >&5
Using built-in specs.
COLLECT_GCC=/g9/weiww/local/gcc-9.5.0/bin/gcc
COLLECT_LTO_WRAPPER=/g9/weiww/local/gcc-9.5.0/libexec/gcc/x86_64-pc-linux-gnu/9.5.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../configure --prefix=/g9/weiww/local/gcc-9.5.0 --enable-checking=release --enable-languages=c,c++,fortran --disable-multilib
Thread model: posix
gcc version 9.5.0 (GCC)
configure:2380: $? = 0
configure:2369: mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2380: $? = 1
configure:2369: mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:2380: $? = 1
configure:2400: checking whether the C compiler works
configure:2422: mpicc -std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -L/g9/weiww/local/hdf5-1.13.0/lib -L/g9/weiww/local/netcdf-4.5.4:/g1/app/mathlib/netcdf/3.6.3/intel/lib -L/lib -L/g9/weiww/local/openmpi-4.1.1//lib -lnetcdff -llapack -lblas conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz >&5
/usr/bin/ld: cannot find -lnetcdff
/usr/bin/ld: cannot find -lnetcdf
collect2: error: ld returned 1 exit status
configure:2426: $? = 1
configure:2464: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "MCT"
| #define PACKAGE_TARNAME "mct"
| #define PACKAGE_VERSION "2.8"
| #define PACKAGE_STRING "MCT 2.8"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:2469: error: in `/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct':
configure:2471: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_env_AR_set=
ac_cv_env_AR_value=
ac_cv_env_BABELROOT_set=
ac_cv_env_BABELROOT_value=
ac_cv_env_BIT64_set=
ac_cv_env_BIT64_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=mpicc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
ac_cv_env_COMPILER_ROOT_set=
ac_cv_env_COMPILER_ROOT_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_DEBUG_set=set
ac_cv_env_DEBUG_value=FALSE
ac_cv_env_ENDIAN_set=
ac_cv_env_ENDIAN_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -O2 -ffree-form -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
## ----------------- ##
## Output variables. ##
## ----------------- ##
AR=''
BABELROOT=''
BIT64=''
CC='mpicc'
CFLAGS='-std=gnu99 -O -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -I.. -I. -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/local/netcdf-4.5.4/include -I/g9/weiww/cesm/work/f.e21.F1850.f19_g17.001/bld/gnu/mpich/nodebug/nothreads/include'
COMPILER_ROOT=''
CPP=''
CPPDEFS=' -DLINUX -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC'
CPPFLAGS=''
CRULE=''
DEBUG='FALSE'
DEFS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENDIAN=''
EXEEXT=''
FC='mpifort'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "MCT"
#define PACKAGE_TARNAME "mct"
#define PACKAGE_VERSION "2.8"
#define PACKAGE_STRING "MCT 2.8"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
configure: exit 77
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