robert_letscher@unh_edu
New Member
I'm attempting to setup cesm v2 to run on my university cluster for the first time and I'm encountering an error in the pio build of .case.build stating that CIME requires NETCDF in the PIO build. I've listed the directory locations on my cluster of netcdf, C++ netcdf, and fortran netcdf as well as the associated libraries in the file 'config_machines.xml' but based on the pio.bldlog file it appears that netcdf_fortran_libary and netcdf_fortran_include_dir are missing (could not be found). pio.bldlog pasted below; config_machines.xml attached. My compiler is gnu v4.
gmake /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/Makefile -C /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASEROOT=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASETOOLS=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools PIO_VERSION=1 MPILIB=openmpi SHAREDLIBROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio EXEROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld COMPILER=gnu BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/Makefilegmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkSrcfilescp -f Filepath Deppath/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkDepends Deppath Srcfiles > Dependsgmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1; CC=/usr/lib64/openmpi/bin/mpicc CXX=/usr/lib64/openmpi/bin/mpicxx FC=/usr/lib64/openmpi/bin/mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/CMake;/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio2/cmake" -D NetCDF_C_PATH:PATH=/usr -D NetCDF_Fortran_PATH:PATH=/usr -D WITH_PNETCDF:LOGICAL=FALSE -D PIO_USE_MPIIO:LOGICAL=FALSE -D GENF90_PATH=/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90 /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1-- The C compiler identification is GNU 4.8.5-- The Fortran compiler identification is GNU-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90 -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- yes-- Fortran compiler does not support c_sizeof function-- Found NetCDF_C: /usr/lib64/libnetcdf.so -- Checking NetCDF version-- Checking NetCDF version - 4.3.3.1-- Checking whether NetCDF has parallel support-- Checking whether NetCDF has parallel support - yes-- Looking for nc_set_log_level-- Looking for nc_set_log_level - not found-- Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) -- MPI Fortran module detected and enabled.-- Configuring done-- Generating done-- Build files have been written to: /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1gmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'cat: Filepath: No such file or directorycat: Srcfiles: No such file or directory%file_modules%file_includes@check_includes
Building PIO without netcdf support TRUE FALSECMake Warning at pio/CMakeLists.txt:48 (MESSAGE): Warning: Not building with PNetcdf - cannot run all regression tests.
CMake Warning: Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS GPTL_PATH PIO_ENABLE_TESTSgmake -j 8/usr/bin/cmake -H/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 -B/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0/usr/bin/cmake -E cmake_progress_start /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marksgmake -f CMakeFiles/Makefile2 allgmake[1]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/dependgmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 12/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 1/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 2/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 3/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 4/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 5/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 6/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 7[ 10%] [ 10%] [ 10%] [ 12%] [ 12%] [ 17%] [ 20%] [ 20%] Generating pio_msg_getput_callbacks.F90Generating pionfread_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90Generating pionfwrite_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90Generating pionfatt_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90Generating pionfput_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90Generating pionfget_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90Generating alloc_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90Generating box_rearrange.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 8/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 9/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 10/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 11[ 25%] [ 30%] [ 30%] [ 30%] Generating rearrange.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90Generating piodarray.F90Generating pio_spmd_utils.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90Generating iompi_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=Scanning dependencies of target piogmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/requiresgmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 14[ 33%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 22/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 17[ 38%] [ 38%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_support.F90 -o CMakeFiles/pio.dir/pio_support.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pio_types.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_types 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pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio 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-ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp GNU/usr/bin/cmake -E cmake_copy_f90_mod pio/calcdecomp pio/CMakeFiles/pio.dir/calcdecomp.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_utils pio/CMakeFiles/pio.dir/pio_utils.mod.stamp GNUgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[3]: Leaving directory 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-I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfatt_mod.F90 -o CMakeFiles/pio.dir/pionfatt_mod.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/alloc_mod pio/CMakeFiles/pio.dir/alloc_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/alloc_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make 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-DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfread_mod.F90 -o CMakeFiles/pio.dir/pionfread_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/ionf_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/nf_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT 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-D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.ocd 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/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/iompi_mod pio/CMakeFiles/pio.dir/iompi_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_spmd_utils pio/CMakeFiles/pio.dir/pio_spmd_utils.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfatt_mod pio/CMakeFiles/pio.dir/pionfatt_mod.mod.stamp GNU/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfread_mod pio/CMakeFiles/pio.dir/pionfread_mod.mod.stamp GNU/usr/bin/cmake -E touch 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cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 34/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build[ 74%] gmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'Building Fortran object pio/CMakeFiles/pio.dir/box_rearrange.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/nf_mod pio/CMakeFiles/pio.dir/nf_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.buildgmake[3]: Entering directory 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-I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfput_mod.F90 -o CMakeFiles/pio.dir/pionfput_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC 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-DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfget_mod pio/CMakeFiles/pio.dir/pionfget_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/rearrange pio/CMakeFiles/pio.dir/rearrange.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 37[ 84%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 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`/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/piodarray pio/CMakeFiles/pio.dir/piodarray.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 18[ 87%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/piolib_mod pio/CMakeFiles/pio.dir/piolib_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 13[ 89%] Building Fortran object pio/CMakeFiles/pio.dir/pio.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio.F90 -o CMakeFiles/pio.dir/pio.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio pio/CMakeFiles/pio.dir/pio.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/buildgmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 20/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 26/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 27/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 39[ 92%] [ 94%] [100%] Building Fortran object pio/CMakeFiles/pio.dir/pio_nf_utils.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o[100%] Building C object pio/CMakeFiles/pio.dir/topology.c.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpicc -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -o CMakeFiles/pio.dir/topology.c.o -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/topology.cBuilding Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils pio/CMakeFiles/pio.dir/pio_nf_utils.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_nf_utils.F90.o.provides.buildLinking Fortran static library libpio.acd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/bin/cmake -P CMakeFiles/pio.dir/cmake_clean_target.cmakecd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/bin/cmake -E cmake_link_script CMakeFiles/pio.dir/link.txt --verbose=1/usr/bin/ar cr libpio.a CMakeFiles/pio.dir/pio.F90.o CMakeFiles/pio.dir/pio_kinds.F90.o CMakeFiles/pio.dir/nf_mod.F90.o CMakeFiles/pio.dir/ionf_mod.F90.o CMakeFiles/pio.dir/pio_types.F90.o CMakeFiles/pio.dir/piolib_mod.F90.o CMakeFiles/pio.dir/pio_mpi_utils.F90.o CMakeFiles/pio.dir/pio_nf_utils.F90.o CMakeFiles/pio.dir/pio_utils.F90.o CMakeFiles/pio.dir/pio_support.F90.o CMakeFiles/pio.dir/calcdisplace_mod.F90.o CMakeFiles/pio.dir/calcdecomp.F90.o CMakeFiles/pio.dir/pio_msg_mod.F90.o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o/usr/bin/ranlib libpio.agmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39[100%] Built target piogmake[1]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_start /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 0Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Installing pio version 1 ERROR: CIME models require NETCDF in PIO build
gmake /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/Makefile -C /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASEROOT=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001 MODEL=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 CASETOOLS=/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools PIO_VERSION=1 MPILIB=openmpi SHAREDLIBROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio EXEROOT=/mnt/lustre/letscher/rtl1006/rtl.001/bld COMPILER=gnu BUILD_THREADED=False USER_CPPDEFS=-DTIMING -f /mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/Makefilegmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkSrcfilescp -f Filepath Deppath/mnt/lustre/letscher/rtl1006/cesm_runs/rtl.001/Tools/mkDepends Deppath Srcfiles > Dependsgmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1; CC=/usr/lib64/openmpi/bin/mpicc CXX=/usr/lib64/openmpi/bin/mpicxx FC=/usr/lib64/openmpi/bin/mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D USER_CMAKE_MODULE_PATH:LIST="/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/CMake;/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio2/cmake" -D NetCDF_C_PATH:PATH=/usr -D NetCDF_Fortran_PATH:PATH=/usr -D WITH_PNETCDF:LOGICAL=FALSE -D PIO_USE_MPIIO:LOGICAL=FALSE -D GENF90_PATH=/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90 /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1-- The C compiler identification is GNU 4.8.5-- The Fortran compiler identification is GNU-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90 -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- yes-- Fortran compiler does not support c_sizeof function-- Found NetCDF_C: /usr/lib64/libnetcdf.so -- Checking NetCDF version-- Checking NetCDF version - 4.3.3.1-- Checking whether NetCDF has parallel support-- Checking whether NetCDF has parallel support - yes-- Looking for nc_set_log_level-- Looking for nc_set_log_level - not found-- Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR) -- MPI Fortran module detected and enabled.-- Configuring done-- Generating done-- Build files have been written to: /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1gmake: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'cat: Filepath: No such file or directorycat: Srcfiles: No such file or directory%file_modules%file_includes@check_includes
Building PIO without netcdf support TRUE FALSECMake Warning at pio/CMakeLists.txt:48 (MESSAGE): Warning: Not building with PNetcdf - cannot run all regression tests.
CMake Warning: Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS GPTL_PATH PIO_ENABLE_TESTSgmake -j 8/usr/bin/cmake -H/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 -B/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 --check-build-system CMakeFiles/Makefile.cmake 0/usr/bin/cmake -E cmake_progress_start /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles/progress.marksgmake -f CMakeFiles/Makefile2 allgmake[1]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/dependgmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 12/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 1/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 2/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 3/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 4/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 5/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 6/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 7[ 10%] [ 10%] [ 10%] [ 12%] [ 12%] [ 17%] [ 20%] [ 20%] Generating pio_msg_getput_callbacks.F90Generating pionfread_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_getput_callbacks.F90.in > pio_msg_getput_callbacks.F90Generating pionfwrite_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfread_mod.F90.in > pionfread_mod.F90Generating pionfatt_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfwrite_mod.F90.in > pionfwrite_mod.F90Generating pionfput_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfatt_mod.F90.in > pionfatt_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfput_mod.F90.in > pionfput_mod.F90Generating pionfget_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pionfget_mod.F90.in > pionfget_mod.F90Generating alloc_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/alloc_mod.F90.in > alloc_mod.F90Generating box_rearrange.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/box_rearrange.F90.in > box_rearrange.F90/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 8/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 9/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 10/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 11[ 25%] [ 30%] [ 30%] [ 30%] Generating rearrange.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/rearrange.F90.in > rearrange.F90Generating piodarray.F90Generating pio_spmd_utils.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/piodarray.F90.in > piodarray.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_spmd_utils.F90.in > pio_spmd_utils.F90Generating iompi_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/genf90/genf90.pl /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/iompi_mod.F90.in > iompi_mod.F90cd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1 /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1 /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/CMakeFiles/pio.dir/DependInfo.cmake --color=Scanning dependencies of target piogmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/requiresgmake[2]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 14[ 33%] Building Fortran object pio/CMakeFiles/pio.dir/pio_kinds.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_kinds.F90 -o CMakeFiles/pio.dir/pio_kinds.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_kinds pio/CMakeFiles/pio.dir/pio_kinds.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_kinds.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_support.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pio_types.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 22/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 17[ 38%] [ 38%] Building Fortran object pio/CMakeFiles/pio.dir/pio_support.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF 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/usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_types.F90 -o CMakeFiles/pio.dir/pio_types.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_types 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-D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_mpi_utils.F90 -o CMakeFiles/pio.dir/pio_mpi_utils.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pio_msg_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/alloc_mod.F90 -o CMakeFiles/pio.dir/alloc_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/calcdecomp.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_mod.F90 -o CMakeFiles/pio.dir/pio_msg_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pio_spmd_utils.F90 -o CMakeFiles/pio.dir/pio_spmd_utils.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdecomp.F90 -o CMakeFiles/pio.dir/calcdecomp.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_mpi_utils pio/CMakeFiles/pio.dir/pio_mpi_utils.mod.stamp GNU/usr/bin/cmake -E cmake_copy_f90_mod pio/calcdecomp pio/CMakeFiles/pio.dir/calcdecomp.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdecomp.F90.o.provides.build/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_mpi_utils.F90.o.provides.build/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_utils pio/CMakeFiles/pio.dir/pio_utils.mod.stamp GNUgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_utils.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_msg_mod pio/CMakeFiles/pio.dir/pio_msg_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_msg_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 28/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 32[ 58%] [ 58%] Building Fortran object pio/CMakeFiles/pio.dir/pionfget_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pionfatt_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfget_mod.F90 -o CMakeFiles/pio.dir/pionfget_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include 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-D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/ionf_mod.F90 -o CMakeFiles/pio.dir/ionf_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/iompi_mod.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/iompi_mod.F90 -o 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/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/calcdisplace_mod.F90 -o CMakeFiles/pio.dir/calcdisplace_mod.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/iompi_mod pio/CMakeFiles/pio.dir/iompi_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_spmd_utils pio/CMakeFiles/pio.dir/pio_spmd_utils.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio_spmd_utils.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfatt_mod pio/CMakeFiles/pio.dir/pionfatt_mod.mod.stamp GNU/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfread_mod pio/CMakeFiles/pio.dir/pionfread_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.build/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/calcdisplace_mod pio/CMakeFiles/pio.dir/calcdisplace_mod.mod.stamp GNUgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build/usr/bin/cmake -E cmake_copy_f90_mod pio/ionf_mod pio/CMakeFiles/pio.dir/ionf_mod.mod.stamp GNUgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E 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-I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/box_rearrange.F90 -o CMakeFiles/pio.dir/box_rearrange.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/nf_mod pio/CMakeFiles/pio.dir/nf_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.buildgmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.buildgmake[3]: Entering directory 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-I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfput_mod.F90 -o CMakeFiles/pio.dir/pionfput_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pionfwrite_mod.F90 -o CMakeFiles/pio.dir/pionfwrite_mod.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfwrite_mod pio/CMakeFiles/pio.dir/pionfwrite_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod 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-DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/rearrange.F90 -o CMakeFiles/pio.dir/rearrange.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfget_mod pio/CMakeFiles/pio.dir/pionfget_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/rearrange pio/CMakeFiles/pio.dir/rearrange.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 37[ 84%] Building Fortran object pio/CMakeFiles/pio.dir/piodarray.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/piodarray.F90 -o CMakeFiles/pio.dir/piodarray.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pionfput_mod pio/CMakeFiles/pio.dir/pionfput_mod.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_copy_f90_mod pio/piodarray pio/CMakeFiles/pio.dir/piodarray.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.buildgmake[3]: Entering directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 18[ 87%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none 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-I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio.F90 -o CMakeFiles/pio.dir/pio.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio pio/CMakeFiles/pio.dir/pio.mod.stamp GNU/usr/bin/cmake -E touch pio/CMakeFiles/pio.dir/pio.F90.o.provides.buildgmake[3]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/buildgmake[2]: Entering directory 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-DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_nf_utils.F90 -o CMakeFiles/pio.dir/pio_nf_utils.F90.o[100%] Building C object pio/CMakeFiles/pio.dir/topology.c.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpicc -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -std=gnu99 -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -o CMakeFiles/pio.dir/topology.c.o -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/topology.cBuilding Fortran object pio/CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio/pio_msg_getput_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.oBuilding Fortran object pio/CMakeFiles/pio.dir/pio_msg_callbacks.F90.ocd /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio && /usr/lib64/openmpi/bin/mpif90 -DNO_C_SIZEOF -D_NONETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -D_NO_MPI_RSEND -I. -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/include -I/usr/include -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/include -ffree-line-length-none -I/mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio -I/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/pio -c /mnt/lustre/letscher/rtl1006/my_cesm_sandbox/cime/src/externals/pio1/pio/pio_msg_callbacks.F90 -o CMakeFiles/pio.dir/pio_msg_callbacks.F90.o/usr/bin/cmake -E cmake_copy_f90_mod pio/pio_nf_utils 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CMakeFiles/pio.dir/pio_msg_callbacks.F90.o CMakeFiles/pio.dir/topology.c.o CMakeFiles/pio.dir/pionfatt_mod.F90.o CMakeFiles/pio.dir/pionfread_mod.F90.o CMakeFiles/pio.dir/pionfwrite_mod.F90.o CMakeFiles/pio.dir/pionfput_mod.F90.o CMakeFiles/pio.dir/pionfget_mod.F90.o CMakeFiles/pio.dir/alloc_mod.F90.o CMakeFiles/pio.dir/box_rearrange.F90.o CMakeFiles/pio.dir/rearrange.F90.o CMakeFiles/pio.dir/iompi_mod.F90.o CMakeFiles/pio.dir/piodarray.F90.o CMakeFiles/pio.dir/pio_spmd_utils.F90.o CMakeFiles/pio.dir/pio_msg_getput_callbacks.F90.o/usr/bin/ranlib libpio.agmake[2]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_report /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39[100%] Built target piogmake[1]: Leaving directory `/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1'/usr/bin/cmake -E cmake_progress_start /mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/pio/pio1/CMakeFiles 0Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Warning: Nonexistent include directory "/mnt/lustre/letscher/rtl1006/rtl.001/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"Installing pio version 1 ERROR: CIME models require NETCDF in PIO build