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ERROR: Could not find all inputdata on any server

Z

zqzq

zqzqzqzq
Member
Dear all,
the first step :./create_newcase --case ylzb1 --compset I1PtClm50SpRsGs --res CLM_USRDAT --mach jn
When the ./case.submit command is executed, the model reports the following error,The specific content is as follows：




env_batch.xml appears to have changed, regenerating batch scripts
manual edits to these file will be lost!

Creating batch scripts
Writing case.run script from input template /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/config/cesm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/config/cesm/machines/template.st_archive
Creating file case.st_archive
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Creating component namelists
2021-10-04 16:09:16 atm
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/data_comps_mct/datm/cime_config/buildnml
2021-10-04 16:09:16 lnd
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/components/clm//cime_config/buildnml
2021-10-04 16:09:17 ice
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/sice/cime_config/buildnml
2021-10-04 16:09:17 ocn
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/socn/cime_config/buildnml
2021-10-04 16:09:17 rof
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/srof/cime_config/buildnml
2021-10-04 16:09:17 glc
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml
2021-10-04 16:09:17 wav
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/swav/cime_config/buildnml
2021-10-04 16:09:17 iac
Running /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/siac/cime_config/buildnml
2021-10-04 16:09:17 esp
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml
2021-10-04 16:09:17 cpl
Calling /es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/src/drivers/mct/cime_config/buildnml
Checking that inputdata is available as part of case submission
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Loading input file list: 'Buildconf/datm.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/clm.input_data_list'
Model clm missing file fatmlndfrc = '/es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/inputdata/share/domains/UNSET'
Client protocol gftp not enabled
Using protocol wget with user anonymous and passwd user@example.edu
Could not connect to repo 'ftp://ftp.cgd.ucar.edu/cesm/inputdata/'
This is most likely either a proxy, or network issue .
Using protocol ftp with user anonymous and passwd user@example.edu
server address ftp.cgd.ucar.edu root path cesm/inputdata
ftp login timeout! [Errno -2] Name or service not known
Using protocol svn with user and passwd

Could not connect to svn repo 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata'
This is most likely either a credential, proxy, or network issue .
To check connection and store your credential run 'svn ls https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata' and permanently store your password
Client protocol None not enabled
Checking server ftp://gridanon.cgd.ucar.edu:2811/cesm/inputdata/ with protocol gftp
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Client protocol gftp not enabled
Checking server ftp://ftp.cgd.ucar.edu/cesm/inputdata/ with protocol wget
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Using protocol wget with user anonymous and passwd user@example.edu
Could not connect to repo 'ftp://ftp.cgd.ucar.edu/cesm/inputdata/'
This is most likely either a proxy, or network issue .
Checking server ftp.cgd.ucar.edu/cesm/inputdata with protocol ftp
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Using protocol ftp with user anonymous and passwd user@example.edu
server address ftp.cgd.ucar.edu root path cesm/inputdata
ftp login timeout! [Errno -2] Name or service not known
Checking server https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata with protocol svn
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Using protocol svn with user and passwd

Could not connect to svn repo 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata'
This is most likely either a credential, proxy, or network issue .
To check connection and store your credential run 'svn ls https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata' and permanently store your password
Loading input file list: 'Buildconf/datm.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/clm.input_data_list'
Model clm missing file fatmlndfrc = '/es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/inputdata/share/domains/UNSET'
Trying to download file: 'share/domains/UNSET' to path '/es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/inputdata/share/domains/UNSET' using SVN protocol.
svn export failed with output: and errput svn: E175002: Unable to connect to a repository at URL 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/share/domains/UNSET'
svn: E175002: OPTIONS of 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/share/domains/UNSET': Could not resolve hostname `svn-ccsm-inputdata.cgd.ucar.edu': Host not found (https://svn-ccsm-inputdata.cgd.ucar.edu)

Checking server None with protocol None
Setting Environment NETCDF_PATH=/es01/paratera/parasoft/intel2018-software/netcdf-4.4.1.1-parallel
Setting Environment PNETCDF_PATH=/es01/paratera/parasoft/pnetcdf-1.12.2/pnetcdf
Setting Environment UCX_TLS=ud,sm,self
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Client protocol None not enabled
ERROR: Could not find all inputdata on any server


Hope to get advice from scholars！
 
Z

zqzq

zqzqzqzq
Member
Model clm missing file fatmlndfrc = '/es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/inputdata/share/domains/UNSET'，I can not download it.
 
Z

zqzq

zqzqzqzq
Member
oleson said:
If you want to run a single point simulation of your own choosing, you'll need to create the domain file and the surface dataset. See the example in section 1.6.3.5 of the User's Guide:

1.6.3. Running Single Point Configurations — ctsm CTSM master documentation

For more details on the CLM tools:

Click to expand...
Thank you very much for your reply, the above problem has been solved, but I encountered the following problem again.when i submit the case,the model shows that "Model datm missing file domainfile = '/es01/paratera/sce0489/cesm2.2/my_cesm_sandbox/cime/tools/mapping/gen_domain_files/domain.ind.1x1_XZYLZBU_noocean.nc".
However, under the corresponding path, I have the nc file, but the model shows that I am missing. Do you have any suggestions to solve this problem?
 
F

fischer

CSEG and Liaisons
Staff member
Double check to make sure you don't have any typos in the path name.

Also, if you're running on a batch system, it's possible that the compute nodes aren't mounting that file system. Try putting
the domain file on the same file system that has your run directory.
 
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