Error in buiding CESM1.2.0

[rosh_me91@gmail_com]

Hi everyone,Im running CESM1.2.0 with active CLM4.5 and active CAM5 with user defined compset. My step to create the case is:/home/apps/cesm/cesm1_2_0/scripts/create_newcase -case Ocomp_1deg_144 -res f09_f09 -user_compset CAM5_CLM45_CICE%PRES_DOCN%DOM  -mach IITD -mpilib mpich -compiler pgiIm using 144 cores with 6 nodes (24 max pes/node)  and ATM_NCPL = 48.In the build step I faced the same problem for 1 degree resolution and 2 degree resolution which is: mpif90  -c -I.  -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/pio -I/home/apps/cesm/depedencies/netcdf/include -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/atm/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lnd/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/ice/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/ocn/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/glc/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/rof/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/wav/obj -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/mct/mct -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/mct/mpeu -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/pio -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/gptl -I/home/apps/cesm/cesm1_2_0/models/utils/pio -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/include -I. -I/home/cas/phd/asz122525/TEST_1deg/Ocomp_1deg_144/SourceMods/src.drv -I/home/apps/cesm/cesm1_2_0/models/drv/driver -I/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16  -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /home/apps/cesm/cesm1_2_0/models/drv/driver/ccsm_driver.F90
  Timing stats:
    import                  83 millisecs    22%
    expand                 217 millisecs    59%
    schedule                66 millisecs    18%
    Total time             366 millisecs
mpif90  -o /scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -latm  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -lice  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -llnd  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -locn  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -lrof  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -lglc  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib/ -lwav -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib -lcsm_share  -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/mct/mct -lmct -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/mct/mpeu -lmpeu -L/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/pio -lpio -lgptl -L/home/apps/cesm/depedencies/netcdf/lib -lnetcdf  -lnetcdff  -time -Wl,--allow-multiple-definition
/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/lib//liblnd.a(BandDiagonalMod.o): In function `banddiagonalmod_banddiagonal_':
/home/apps/cesm/cesm1_2_0/models/lnd/clm/src/clm4_5/biogeophys/BandDiagonalMod.F90:213: undefined reference to `dgbsv_'
gmake: *** [/scratch/cas/phd/asz122525/Ocomp_1deg_144/bld/cesm.exe] Error 2


Please let know if it is a machine based error or some model related error.Thanks in advance

 

[jedwards]

dgbsv is in the lapack library, you need to build and install it seperatly. 

 

[rosh_me91@gmail_com]

Thanks for the reply,that problem is solved but now it is unable to build the Srcfile and is showing the following error:-------------------------------------------------------------------------
 Building a single executable version of CESM
-------------------------------------------------------------------------
cat: Srcfiles: No such file or directory
/home/cas/phd/asz122525/test_Ocomp_1mon_576/Tools/mkSrcfiles
cp -f /scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/cesm/obj/Filepath /scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/cesm/obj/Deppath
/home/cas/phd/asz122525/test_Ocomp_1mon_576/Tools/mkDepends  Deppath Srcfiles > /scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/cesm/obj/Depends
mpif90  -c -I.  -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/home/apps/cesm/depedencies/netcdf/include -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/atm/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lnd/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ice/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ocn/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/glc/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/rof/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/wav/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mct -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mpeu -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/gptl -I/home/apps/cesm/cesm1_2_0/models/utils/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include -I. -I/home/cas/phd/asz122525/test_Ocomp_1mon_576/SourceMods/src.drv -I/home/apps/cesm/cesm1_2_0/models/drv/driver -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16  -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /home/apps/cesm/cesm1_2_0/models/drv/driver/seq_diag_mct.F90
mpif90  -c -I.  -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/home/apps/cesm/depedencies/netcdf/include -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/atm/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lnd/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ice/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ocn/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/glc/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/rof/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/wav/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mct -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mpeu -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/gptl -I/home/apps/cesm/cesm1_2_0/models/utils/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include -I. -I/home/cas/phd/asz122525/test_Ocomp_1mon_576/SourceMods/src.drv -I/home/apps/cesm/cesm1_2_0/models/drv/driver -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16  -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /home/apps/cesm/cesm1_2_0/models/drv/driver/seq_map_esmf.F90
mpif90  -c -I.  -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/home/apps/cesm/depedencies/netcdf/include -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/atm/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lnd/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ice/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ocn/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/glc/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/rof/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/wav/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mct -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mpeu -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/gptl -I/home/apps/cesm/cesm1_2_0/models/utils/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include -I. -I/home/cas/phd/asz122525/test_Ocomp_1mon_576/SourceMods/src.drv -I/home/apps/cesm/cesm1_2_0/models/drv/driver -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16  -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /home/apps/cesm/cesm1_2_0/models/drv/driver/seq_avdata_mod.F90
mpif90  -c -I.  -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/home/apps/cesm/depedencies/netcdf/include -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/atm/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lnd/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ice/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/ocn/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/glc/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/rof/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/wav/obj -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mct -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/mct/mpeu -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/gptl -I/home/apps/cesm/cesm1_2_0/models/utils/pio -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include -I. -I/home/cas/phd/asz122525/test_Ocomp_1mon_576/SourceMods/src.drv -I/home/apps/cesm/cesm1_2_0/models/drv/driver -I/scratch/cas/phd/asz122525/test_Ocomp_1mon_576/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16  -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /home/apps/cesm/cesm1_2_0/models/drv/driver/mrg_mod.F90

 

 

[jedwards]

There is no error here - please attach the buildlog with a .txt extension or just cut and paste the relevent bit.

 

[mengyu]

There is no error here - please attach the buildlog with a .txt extension or just cut and paste the relevent bit.

I have the same problem and I can't understand your answer. Could you explain it more clearly? Thanks a lot.