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Error in ./case.build

I

Ipshita

Ipshita
New Member
File not found: grid_file = "/home/imajhi/cesm/inputdata/ocn/pop/gx1v6/grid/horiz_grid_20010402.ieeer8", will attempt to download in check_input_data phase


File not found: kmt_file = "/home/imajhi/cesm/inputdata/ocn/pop/gx1v6/grid/topography_20090204.ieeei4", will attempt to download in check_input_data phase


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/components/pop//cime_config/buildnml


... buildnml: calling pop buildcpp to set build time options


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/components/mosart//cime_config/buildnml


File not found: frivinp_rtm = "/home/imajhi/cesm/inputdata/rof/mosart/MOSART_routing_Global_0.5x0.5_c170601.nc", will attempt to download in check_input_data phase


Running /raid3/tburg/cesm/cesm_2.1.1/CESM/components/cism//cime_config/buildnml


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/components/ww3//cime_config/buildnml


File not found: prestage_wind = "/home/imajhi/cesm/inputdata/wav/ww3/core2_G4_wns_30min_20000601_to_05.nc", will attempt to download in check_input_data phase


File not found: prestage_mod_def = "/home/imajhi/cesm/inputdata/wav/ww3/G4L1.mod_def.ww3.121031", will attempt to download in check_input_data phase


File not found: initfile = "/home/imajhi/cesm/inputdata/wav/ww3/restart.ww3.init.seed", will attempt to download in check_input_data phase


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/components/stub_comps/sesp/cime_config/buildnml


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/drivers/mct/cime_config/buildnml


File not found: atm2ocn_fmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_aave.130322.nc", will attempt to download in check_input_data phase


File not found: atm2ocn_smapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_blin.130322.nc", will attempt to download in check_input_data phase


File not found: atm2ocn_vmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_patc.130322.nc", will attempt to download in check_input_data phase


File not found: ocn2atm_fmapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_fv0.9x1.25_aave.130322.nc", will attempt to download in check_input_data phase


File not found: ocn2atm_smapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_fv0.9x1.25_aave.130322.nc", will attempt to download in check_input_data phase


File not found: atm2ice_fmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_aave.130322.nc", will attempt to download in check_input_data phase


File not found: atm2ice_smapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_blin.130322.nc", will attempt to download in check_input_data phase


File not found: atm2ice_vmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v6_patc.130322.nc", will attempt to download in check_input_data phase


File not found: ice2atm_fmapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_fv0.9x1.25_aave.130322.nc", will attempt to download in check_input_data phase


File not found: ice2atm_smapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_fv0.9x1.25_aave.130322.nc", will attempt to download in check_input_data phase


File not found: lnd2rof_fmapname = "lnd/clm2/mappingdata/maps/0.9x1.25/map_0.9x1.25_nomask_to_0.5x0.5_nomask_aave_da_c120522.nc", will attempt to download in check_input_data phase


File not found: rof2lnd_fmapname = "lnd/clm2/mappingdata/maps/0.9x1.25/map_0.5x0.5_nomask_to_0.9x1.25_nomask_aave_da_c121019.nc", will attempt to download in check_input_data phase


File not found: rof2ocn_fmapname = "cpl/cpl6/map_r05_TO_g16_aave.120920.nc", will attempt to download in check_input_data phase


File not found: glc2ocn_liq_rmapname = "cpl/gridmaps/gland4km/map_gland4km_to_gx1v6_nn_open_ocean_nnsm_e1000r300_marginal_sea_171105.nc", will attempt to download in check_input_data phase


File not found: glc2ocn_ice_rmapname = "cpl/gridmaps/gland4km/map_gland4km_to_gx1v6_nnsm_e1000r300_171105.nc", will attempt to download in check_input_data phase


File not found: rof2ocn_liq_rmapname = "cpl/gridmaps/r05/map_r05_to_gx1v6_nn_open_ocean_nnsm_e1000r300_marginal_sea_170503.nc", will attempt to download in check_input_data phase


File not found: rof2ocn_ice_rmapname = "cpl/gridmaps/r05/map_r05_to_gx1v6_nnsm_e1000r300_170503.nc", will attempt to download in check_input_data phase


File not found: lnd2glc_fmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gland4km_aave.170429.nc", will attempt to download in check_input_data phase


File not found: lnd2glc_smapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gland4km_blin.170429.nc", will attempt to download in check_input_data phase


File not found: glc2lnd_fmapname = "cpl/gridmaps/gland4km/map_gland4km_TO_fv0.9x1.25_aave.170429.nc", will attempt to download in check_input_data phase


File not found: glc2lnd_smapname = "cpl/gridmaps/gland4km/map_gland4km_TO_fv0.9x1.25_aave.170429.nc", will attempt to download in check_input_data phase


File not found: atm2wav_smapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_ww3a_bilin.160324.nc", will attempt to download in check_input_data phase


File not found: ocn2wav_smapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_ww3a_splice_150428.nc", will attempt to download in check_input_data phase


File not found: ice2wav_smapname = "cpl/gridmaps/gx1v6/map_gx1v6_TO_ww3a_splice_150428.nc", will attempt to download in check_input_data phase


File not found: wav2ocn_smapname = "cpl/gridmaps/ww3a/map_ww3a_TO_gx1v6_splice_150428.nc", will attempt to download in check_input_data phase


Finished creating component namelists


Building gptl with output to file /home/imajhi/cesm/scratch/case1/bld/gptl.bldlog.200304-110234


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/build_scripts/buildlib.gptl


Component gptl build complete with 2 warnings


Building mct with output to file /home/imajhi/cesm/scratch/case1/bld/mct.bldlog.200304-110234


Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/build_scripts/buildlib.mct


ERROR: /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/build_scripts/buildlib.mct FAILED, cat /home/imajhi/cesm/scratch/case1/bld/mct.bldlog.200304-110234
 
J

jedwards

CSEG and Liaisons
Staff member
So what is in /home/imajhi/cesm/scratch/case1/bld/mct.bldlog.200304-110234
also somewhere in bld/ there is a file config.log that will help.
 
I

Ipshita

Ipshita
New Member
make -f /home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile -C /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct CASEROOT=/home/imajhi/home/raid3/Ipshita/case1 MODEL=mct /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct/Makefile.conf


make: Entering directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


make: Leaving directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


ERROR: cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


~


~


~

jedwards said:
So what is in /home/imajhi/cesm/scratch/case1/bld/mct.bldlog.200304-110234
also somewhere in bld/ there is a file config.log that will help.
Click to expand...



Here is the output

make -f /home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile -C /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct CASEROOT=/home/imajhi/home/raid3/Ipshita/case1 MODEL=mct /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct/Makefile.conf


make: Entering directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


make: Leaving directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


ERROR: cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


~


~


~
 
J

jedwards

CSEG and Liaisons
Staff member
I don't want to see the output of you running make by hand in the mct directory - the problem is in the step before that.
I would like to see the output of building a case as documented. You will have a mct.bldlog.* in the bld directory and
a config.log in directory bld/gnu/mpich/nodebug/nothreads/mct.
 
I

Ipshita

Ipshita
New Member
jedwards said:
I don't want to see the output of you running make by hand in the mct directory - the problem is in the step before that.
I would like to see the output of building a case as documented. You will have a mct.bldlog.* in the bld directory and
a config.log in directory bld/gnu/mpich/nodebug/nothreads/mct.
Click to expand...


I dont have a mct.bldlog

and when I open mct

" ============================================================================


" Netrw Directory Listing (netrw v149)


" /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct/mct


" Sorted by name


" Sort sequence: [\/]$,\<core\%(\.\d\+\)\=\>,\.h$,\.c$,\.cpp$,\~\=\*$,*,\.o$,\.obj$,\.info$,\.swp$,\.bak$,\~$


" Quick Help: <F1>:help -:go up dir D:delete R:rename s:sort-by x:exec


" ============================================================================


../


./


Makefile


.swp
 
J

jedwards

CSEG and Liaisons
Staff member
  1. Create a case
  2. From the case directory run case.setup
  3. From the case directory run case.build
 
I

Ipshita

Ipshita
New Member
jedwards said:
  1. Create a case
  2. From the case directory run case.setup
  3. From the case directory run case.build
Click to expand...
Calling /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/build_scripts/buildlib.mct


ERROR: /raid3/tburg/cesm/cesm_2.1.1/CESM/cime/src/build_scripts/buildlib.mct FAILED, cat /home/imajhi/cesm/scratch/case1/bld/mct.bldlog.200306-101420
 
J

jedwards

CSEG and Liaisons
Staff member
Now what is in mct.bldlog.200306-101420? And what is in the config.log in bld/gnu/mpich/nodebug/nothreads/mct/mct?
 
I

Ipshita

Ipshita
New Member
jedwards said:
Now what is in mct.bldlog.200306-101420? And what is in the config.log in bld/gnu/mpich/nodebug/nothreads/mct/mct?
Click to expand...
make -f /home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile -C /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct CASEROOT=/home/imajhi/home/raid3/Ipshita/case1 MODEL=mct /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct/Makefile.conf


make: Entering directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


make: Leaving directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


ERROR: cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.
 
I

Ipshita

Ipshita
New Member
Ipshita said:
make -f /home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile -C /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct CASEROOT=/home/imajhi/home/raid3/Ipshita/case1 MODEL=mct /home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct/Makefile.conf


make: Entering directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


make: Leaving directory `/home/imajhi/cesm/scratch/case1/bld/gnu/mpich/nodebug/nothreads/mct'


cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.


ERROR: cat: Filepath: No such file or directory


/home/imajhi/home/raid3/Ipshita/case1/Tools/Makefile:200: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.
Click to expand...
There is no config.log file
 
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