eolivares@tamu_edu
New Member
Hi y'all!
I've been trying to create some surface data files using CLM4.5. I run makesurfdata.pl with all the arguments I need for my case; however, after set up the location of my netCDF directory LD_LIBRARY_PATH, I still got an error message (please, see below). Could you help me to solve this issue?
[eolivares@ada2 mksurfdata_map]$ ./mksurfdata.pl -res usrspec -usr_gname 0.9x1.25_BRAA -usr_gdate 191010 -usr_mapdir "/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata/" -l /scratch/user/eolivares/newdata/ -allownofile
CSMDATA is /scratch/user/eolivares/newdata/
resolution: 0.9x1.25_BRAA rcp=-999.9 sim_year = 1850
namelist: namelist
&clmexp
nglcec = 0
mksrf_fgrid = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fpft = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fglacier = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_GLOBE-Gardner_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fsoicol = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_furban = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_LandScan2004_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fmax = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_USGS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_forganic = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_5x5min_ISRIC-WISE_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flai = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fharvest = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flakwat = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fwetlnd = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fvocef = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fsoitex = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_5x5min_IGBP-GSDP_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_furbtopo = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_10x10min_nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flndtopo = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_10x10min_nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fgdp = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fpeat = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fabm = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_ftopostats = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_1km-merge-10min_HYDRO1K-merge-nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fvic = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.9x1.25_GRDC_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fch4 = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_360x720cru_cruncep_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
mksrf_fsoitex = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_soitex.10level.c010119.nc'
mksrf_forganic = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_organic_10level_5x5min_ISRIC-WISE-NCSCD_nlev7_c120830.nc'
mksrf_flakwat = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_LakePnDepth_3x3min_simyr2004_c111116.nc'
mksrf_fwetlnd = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_lanwat.050425.nc'
mksrf_fmax = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_fmax_3x3min_USGS_c120911.nc'
mksrf_fglacier = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_glacier_3x3min_simyr2000.c120926.nc'
mksrf_fvocef = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_vocef_0.5x0.5_simyr2000.c110531.nc'
mksrf_furbtopo = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_topo.10min.c080912.nc'
mksrf_flndtopo = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/topodata_10min_USGS_071205.nc'
mksrf_fgdp = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVHRR_simyr2000.c130228.nc'
mksrf_fpeat = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_AVHRR_simyr2000.c130228.nc'
mksrf_fabm = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVHRR_simyr2000.c130201.nc'
mksrf_ftopostats = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_topostats_1km-merge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc'
mksrf_fvic = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GRDC_simyr2000.c130307.nc'
mksrf_fch4 = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_ch4inversion_360x720_cruncep_simyr2000.c130322.nc'
outnc_double = .true.
all_urban = .false.
no_inlandwet = .true.
mksrf_furban = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_urban_0.05x0.05_simyr2000.c120621.nc'
mksrf_fvegtyp = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_landuse_rc1850_c090630.nc'
mksrf_fsoicol = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc'
mksrf_flai = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_lai_global_c090506.nc'
fsurdat = 'surfdata_0.9x1.25_BRAA_simyr1850_c191017.nc'
fsurlog = 'surfdata_0.9x1.25_BRAA_simyr1850_c191017.log'
mksrf_fdynuse = ' '
fdyndat = ' '
/
./mksurfdata_map < namelist
./mksurfdata_map: Symbol `for__b_fmt_table' has different size in shared object, consider re-linking
./mksurfdata_map: Symbol `for__dsc_itm_table' has different size in shared object, consider re-linking
./mksurfdata_map: Symbol `for__oz_fmt_table' has different size in shared object, consider re-linking
forrtl: severe (257): formatted I/O to unit open for unformatted transfers, unit 6, file /dev/pts/20
Image PC Routine Line Source
libifcoremt.so.5 00007F001B95D622 Unknown Unknown Unknown
mksurfdata_map 00000000004A5D39 Unknown Unknown Unknown
mksurfdata_map 0000000000447EB2 MAIN__ 272 mksurfdat.F90
mksurfdata_map 0000000000404D5E Unknown Unknown Unknown
libc.so.6 00007F001C85FD20 Unknown Unknown Unknown
mksurfdata_map 0000000000404BF9 Unknown Unknown Unknown
ERROR in mksurfdata_map: 256
I've been trying to create some surface data files using CLM4.5. I run makesurfdata.pl with all the arguments I need for my case; however, after set up the location of my netCDF directory LD_LIBRARY_PATH, I still got an error message (please, see below). Could you help me to solve this issue?
[eolivares@ada2 mksurfdata_map]$ ./mksurfdata.pl -res usrspec -usr_gname 0.9x1.25_BRAA -usr_gdate 191010 -usr_mapdir "/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata/" -l /scratch/user/eolivares/newdata/ -allownofile
CSMDATA is /scratch/user/eolivares/newdata/
resolution: 0.9x1.25_BRAA rcp=-999.9 sim_year = 1850
namelist: namelist
&clmexp
nglcec = 0
mksrf_fgrid = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fpft = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fglacier = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_GLOBE-Gardner_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fsoicol = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_furban = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_LandScan2004_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fmax = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_USGS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_forganic = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_5x5min_ISRIC-WISE_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flai = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fharvest = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flakwat = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_3x3min_MODIS_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fwetlnd = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fvocef = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fsoitex = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_5x5min_IGBP-GSDP_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_furbtopo = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_10x10min_nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_flndtopo = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_10x10min_nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fgdp = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fpeat = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fabm = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.5x0.5_AVHRR_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_ftopostats = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_1km-merge-10min_HYDRO1K-merge-nomask_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fvic = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_0.9x1.25_GRDC_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
map_fch4 = '/tiered/user/eolivares/1.2.2-intel-2015B/models/lnd/clm/tools/shared/mkmapdata//map_360x720cru_cruncep_to_0.9x1.25_BRAA_nomask_aave_da_c191010.nc'
mksrf_fsoitex = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_soitex.10level.c010119.nc'
mksrf_forganic = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_organic_10level_5x5min_ISRIC-WISE-NCSCD_nlev7_c120830.nc'
mksrf_flakwat = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_LakePnDepth_3x3min_simyr2004_c111116.nc'
mksrf_fwetlnd = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_lanwat.050425.nc'
mksrf_fmax = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_fmax_3x3min_USGS_c120911.nc'
mksrf_fglacier = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_glacier_3x3min_simyr2000.c120926.nc'
mksrf_fvocef = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_vocef_0.5x0.5_simyr2000.c110531.nc'
mksrf_furbtopo = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_topo.10min.c080912.nc'
mksrf_flndtopo = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/topodata_10min_USGS_071205.nc'
mksrf_fgdp = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVHRR_simyr2000.c130228.nc'
mksrf_fpeat = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_AVHRR_simyr2000.c130228.nc'
mksrf_fabm = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVHRR_simyr2000.c130201.nc'
mksrf_ftopostats = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_topostats_1km-merge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc'
mksrf_fvic = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GRDC_simyr2000.c130307.nc'
mksrf_fch4 = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_ch4inversion_360x720_cruncep_simyr2000.c130322.nc'
outnc_double = .true.
all_urban = .false.
no_inlandwet = .true.
mksrf_furban = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/mksrf_urban_0.05x0.05_simyr2000.c120621.nc'
mksrf_fvegtyp = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_landuse_rc1850_c090630.nc'
mksrf_fsoicol = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc'
mksrf_flai = '/scratch/user/eolivares/newdata//lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_lai_global_c090506.nc'
fsurdat = 'surfdata_0.9x1.25_BRAA_simyr1850_c191017.nc'
fsurlog = 'surfdata_0.9x1.25_BRAA_simyr1850_c191017.log'
mksrf_fdynuse = ' '
fdyndat = ' '
/
./mksurfdata_map < namelist
./mksurfdata_map: Symbol `for__b_fmt_table' has different size in shared object, consider re-linking
./mksurfdata_map: Symbol `for__dsc_itm_table' has different size in shared object, consider re-linking
./mksurfdata_map: Symbol `for__oz_fmt_table' has different size in shared object, consider re-linking
forrtl: severe (257): formatted I/O to unit open for unformatted transfers, unit 6, file /dev/pts/20
Image PC Routine Line Source
libifcoremt.so.5 00007F001B95D622 Unknown Unknown Unknown
mksurfdata_map 00000000004A5D39 Unknown Unknown Unknown
mksurfdata_map 0000000000447EB2 MAIN__ 272 mksurfdat.F90
mksurfdata_map 0000000000404D5E Unknown Unknown Unknown
libc.so.6 00007F001C85FD20 Unknown Unknown Unknown
mksurfdata_map 0000000000404BF9 Unknown Unknown Unknown
ERROR in mksurfdata_map: 256