Error in running case of CESM1.2.2

[QuenTin_YEUNG]

Hello guys. There is an error when I ran a case about paleoclimate of 200Ma using CESM1.2.2. The resolution is f02_16 and the compset is B1850.
When the case was run, there was a error below:

Opened existing file
/BIGDATA2/sysu_shicf_1/CESM_inputdata/201Ma/cpl/domain.lnd.0.23x0.31_g1.231227.
nc 393216
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found
NetCDF: Variable not found
NetCDF: Variable not found
Opened existing file
/BIGDATA2/sysu_shicf_1/paleoToolkit-master/cesm1_2/lnd/surfdata_0.23x0.31_201Ma
.c240104.nc 393216
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
Opened existing file
/BIGDATA1/app/CESM_inputdata/lnd/clm2/pftdata/pft-physiology.clm40.c130424.nc
393216
Opened existing file
/BIGDATA2/sysu_shicf_1/paleoToolkit-master/cesm1_2/lnd/surfdata_0.23x0.31_201Ma
.c240104.nc 393216
NetCDF: Variable not found
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
surfrd_get_data: surfdata/fatmgrid lon/lat mismatch error
0.000000000000000E+000 5.867014341593801E-002
ENDRUN:surfrd_get_data
surfrd_get_data: surfdata/fatmgrid lon/lat mismatch error
surfrd_get_data: surfdata/fatmgrid lon/lat mismatch error
0.000000000000000E+000 5.867014341593801E-002
surfrd_get_data: surfdata/fatmgrid lon/lat mismatch error
0.000000000000000E+000 5.867014341593801E-002
ENDRUN:surfrd_get_data

My sets followed the recipe "PaleoToolkit Documentation for Deeptime CESM1.2" but the resolution was set in 0.23x0.31. And ocn, lnd, cpl, atm and rof were set up successfully. But the error implies that there is something wrong with surfdata_0.23x0.31_201Ma.c240104.nc and domain.lnd.0.23x0.31_g1.231227.nc.
I don't know how to solve the problem and this error breaks me down successfully.
Sincerely hope to get your help! Best wishes!

 

[katec]

This is a CTSM issue, so I'll move this post into the forum to get the most eyes on your question.

 

[oleson]

The error means that the lat/lon coordinate information in the surface dataset and the domain file don't agree within some tolerance (1e-3 according to the code). From the dates on those files I assume you've created them yourself (from the paleo toolkit?). I don't know anything about the paleo toolkit so you might post on the paleoclimate forum. One workaround would be to decide which file has the correct coordinates and replace the coordinates in the other file...

 

[QuenTin_YEUNG]

The error means that the lat/lon coordinate information in the surface dataset and the domain file don't agree within some tolerance (1e-3 according to the code). From the dates on those files I assume you've created them yourself (from the paleo toolkit?). I don't know anything about the paleo toolkit so you might post on the paleoclimate forum. One workaround would be to decide which file has the correct coordinates and replace the coordinates in the other file...

Yes, these files is made by myself from the paleo toolkit, because I want to get paleoclimate of 200Ma. Some time ago, I read a post about surfdata/fatmgrid lon/lat mismatch error, which is the same error. it said this mismatch maybe can be changed in the file surfrdMod.F90. I want to ask whether this lon/lat maximum difference can be modified

This post is below:

ERROR in surfdata/fatmgrid lon/lat mismatch error

Hi all, I'm working on change land-sea distribution in the CESM2.1.3, I have generate new ocean domain file and land domain file, and mapping files. The error happened in the run time, viewing the cesm log it says: ENDRUN: ERROR: ERROR in surfrdMod.F90 at line 384 ERROR: ERROR in...

bb.cgd.ucar.edu

 

[QuenTin_YEUNG]

The error means that the lat/lon coordinate information in the surface dataset and the domain file don't agree within some tolerance (1e-3 according to the code). From the dates on those files I assume you've created them yourself (from the paleo toolkit?). I don't know anything about the paleo toolkit so you might post on the paleoclimate forum. One workaround would be to decide which file has the correct coordinates and replace the coordinates in the other file...

Also, I put surfdata and domain data into ArcGIS, the coordinate information of them is same (lon: -0.5 ~ 1151.5 and lat: -0.5 ~ 767.5, the resolution is 0.23x0.31 and version is CESM1.2). So I don't think the error is a coordinate problem (maybe is about coordinate but I'm already confused)

 

[oleson]

I would do an ncdump on the coordinates on the two files to see if they agree or not. But the code is saying that they do not. So you'll have to fix one or the other. The post you mentioned resolved the problem by using a different? option when generating the domain file. For questions on the paleo toolkit, try posting on the paleoclimate forum, maybe someone has a solution for it.

 

[QuenTin_YEUNG]

I would do an ncdump on the coordinates on the two files to see if they agree or not. But the code is saying that they do not. So you'll have to fix one or the other. The post you mentioned resolved the problem by using a different? option when generating the domain file. For questions on the paleo toolkit, try posting on the paleoclimate forum, maybe someone has a solution for it.

Thanks a lot! Now I post it on the paleoclimate forum :)