1057398146@qq_com
New Member
Dear all, I followed the whole process to create user surface dataset for a point simulation named "1x1pt_Bariri" on a user machine.There was no problem in the first 3 steps: 1. Create SCRIP grid datasets with mknoocnmap.pl , 2. Create domain dataset with gen_domain, 3. Create mapping files for mksurfdata_map with mkmapdata.shThe mapping files were successfully created and raw data files "mksrf_..." were downloaded but mksurfdata_map gave an error message when making %fmax with the mapping file:/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.ncAttempting to make lake parameters..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 25920000 x 1 * number of non-zero elements: 10 domain_checksame ERROR: input domain lon and gridmap lon not the same at ni = 18019947 domain lon= 0.000000000000000E+000 gridmap lon= 97.3250122070312 forrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source libc.so.6 0000003BD6681484 Unknown Unknown Unknownmksurfdata_map 0000000000477773 Unknown Unknown Unknownmksurfdata_map 00000000004103F6 mkdomainmod_mp_do 883 mkdomainMod.F90mksurfdata_map 0000000000431907 mklanwatmod_mp_mk 467 mklanwatMod.F90mksurfdata_map 0000000000448E78 MAIN__ 620 mksurfdat.F90mksurfdata_map 0000000000409C2C Unknown Unknown Unknownlibc.so.6 0000003BD661ECDD Unknown Unknown Unknownmksurfdata_map 0000000000409B29 Unknown Unknown UnknownERROR in mksurfdata_map: 44544I really don't understand what was the problem. I recreated all the mapping files again and it still does not help.
------------------------------------------------------------------------------------------------------./mksurfdata.pl -r usrspec -usr_gname $GRIDNAME -usr_gdate $CDATE -y 2000 -usr_mapdir /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata -pft_frc 95,5 -pft_idx 4,0 -soil_cly 31 -soil_snd 30 -soil_col 18CSMDATA is /vol6/home/cmip_fang/cesm1_2_1/inputdata resolution: 1x1_maduo rcp=-999.9 sim_year = 2000namelist: namelist&clmexp nglcec = 0 mksrf_fgrid = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fpft = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fglacier = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_GLOBE-Gardner_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fsoicol = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_furban = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_LandScan2004_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fmax = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_USGS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_forganic = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_5x5min_ISRIC-WISE_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flai = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fharvest = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flakwat = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fwetlnd = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fvocef = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fsoitex = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_5x5min_IGBP-GSDP_to_1x1_maduo_nomask_aave_da_c141217.nc' map_furbtopo = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flndtopo = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fgdp = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fpeat = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fabm = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_ftopostats = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fvic = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.9x1.25_GRDC_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fch4 = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_360x720cru_cruncep_to_1x1_maduo_nomask_aave_da_c141217.nc' mksrf_fsoitex = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_soitex.10level.c010119.nc' mksrf_forganic = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_organic_10level_5x5min_ISRIC-WISE-NCSCD_nlev7_c120830.nc' mksrf_flakwat = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_LakePnDepth_3x3min_simyr2004_c111116.nc' mksrf_fwetlnd = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_lanwat.050425.nc' mksrf_fmax = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_fmax_3x3min_USGS_c120911.nc' mksrf_fglacier = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_glacier_3x3min_simyr2000.c120926.nc' mksrf_fvocef = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vocef_0.5x0.5_simyr2000.c110531.nc' mksrf_furbtopo = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topo.10min.c080912.nc' mksrf_flndtopo = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/topodata_10min_USGS_071205.nc' mksrf_fgdp = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVHRR_simyr2000.c130228.nc' mksrf_fpeat = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_AVHRR_simyr2000.c130228.nc' mksrf_fabm = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVHRR_simyr2000.c130201.nc' mksrf_ftopostats = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topostats_1km-merge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc' mksrf_fvic = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GRDC_simyr2000.c130307.nc' mksrf_fch4 = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_ch4inversion_360x720_cruncep_simyr2000.c130322.nc' outnc_double = .true. all_urban = .false. no_inlandwet = .true. mksrf_furban = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_urban_0.05x0.05_simyr2000.c120621.nc' soil_clay = 31 soil_sand = 30 pft_frc = 95,5 pft_idx = 4,0 mksrf_fvegtyp = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_landuse_rc2000_c090630.nc' mksrf_fsoicol = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc' mksrf_flai = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_lai_global_c090506.nc' fsurdat = 'surfdata_1x1_maduo_simyr2000_c141221.nc' fsurlog = 'surfdata_1x1_maduo_simyr2000_c141221.log' mksrf_fdynuse = ' ' fdyndat = ' ' /./mksurfdata_map < namelist Attempting to initialize control settings ..... Attempting to create surface boundary data .....------------------------------------------------------------ mksrf_fgrid = /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0. 5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc mksrf_gridtype = global Output ALL data in file as 64-bit Set wetland to 0% over land Replace soil clay % for all points with: 31.0000000000000 Replace soil sand % for all points with: 30.0000000000000 Set PFT fraction to : 95.0000000000000 5.00000000000000 With PFT index : 4 0 Output ALL data in file as 100% vegetated calling domain_read finished domain_read fsurdat is 2d lat/lon grid nlon= 1 nlat= 1 (OPNFIL): Successfully opened file surfdata_1x1_maduo_simyr2000_c141221.log on unit= 99 mksrf_gridtype = global Attempting to make PFTs ..... Creating surface datasets with the standard # of PFTs = 16 domain_clean WARN: clean domain unecessary Successfully made PFTs Attempting to make %lake and %wetland ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK domain_clean: cleaning 25920000 Successfully made %lake Attempting to make %wetland ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK domain_clean: cleaning 259200 Successfully made %wetland Attempting to make %glacier ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open glacier file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_glacier_3x3min_ simyr2000.c120926.nc domain_clean: cleaning 25920000 Successfully made %glacier Attempting to make %sand and %clay ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil texture file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_soitex.10level. c010119.nc domain_clean: cleaning 9331200 Successfully made %sand and %clay Attempting to make soil color classes ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil color file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5 .simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc nsoicol = 20(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 domain_clean: cleaning 259200 Successfully made soil color classes Attempting to make %fmax ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil fmax file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_fmax_3x3min_USG S_c120911.nc(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_USGS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 4147200 x 1 * number of non-zero elements: 4 Successfully made %fmax domain_clean: cleaning 4147200 Attempting to make GDP..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open GDP file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVH RR_simyr2000.c130228.nc domain_clean: cleaning 259200 Successfully made GDP Attempting to make peat ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open peat file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_A VHRR_simyr2000.c130228.nc domain_clean: cleaning 259200 Successfully made peat Attempting to make agricultural fire peak month data ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open agricultural fire peak month file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVH RR_simyr2000.c130201.nc domain_clean: cleaning 259200 Successfully made Agricultural fire peak month Attempting to make %urban .....(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_LandScan2004_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 25920000 x 1 * number of non-zero elements: 11 domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open urban file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_urban_0.05x0.05 _simyr2000.c120621.nc Successfully made %urban Attempting to make urban region ..... Successfully made urban region domain_clean: cleaning 25920000 Attempting to make elevation ..... domain_read_dims_2d read lon and lat dims from lsmlon/lsmlat domain_read initialized domain Open elevation file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/topodata_10min_USGS_0 71205.nc(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 2332800 x 1 * number of non-zero elements: 2 domain_clean: cleaning 2332800 Successfully made elevation Attempting to make Topography statistics..... domain_read_dims_1d read 1-d length from num_pixels domain_read initialized domain(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 125599447 x 1 * number of non-zero elements: 40 Open Topography file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topostats_1km-m erge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc domain_clean: cleaning 125599447 Successfully made Topography statistics Attempting to make VIC parameters..... domain_read_dims_2d read lon and lat dims from lsmlon/lsmlat domain_read initialized domain domain_read read mask(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.9x1.25_GRDC_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 55296 x 1 * number of non-zero elements: 1 Open VIC parameter file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GR DC_simyr2000.c130307.nc domain_clean: cleaning 55296 Successfully made VIC parameters Attempting to make lake parameters..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 25920000 x 1 * number of non-zero elements: 10 domain_checksame ERROR: input domain lon and gridmap lon not the same at ni = 18019947 domain lon= 0.000000000000000E+000 gridmap lon= 97.3250122070312 forrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source libc.so.6 0000003BD6681484 Unknown Unknown Unknownmksurfdata_map 0000000000477773 Unknown Unknown Unknownmksurfdata_map 00000000004103F6 mkdomainmod_mp_do 883 mkdomainMod.F90mksurfdata_map 0000000000431907 mklanwatmod_mp_mk 467 mklanwatMod.F90mksurfdata_map 0000000000448E78 MAIN__ 620 mksurfdat.F90mksurfdata_map 0000000000409C2C Unknown Unknown Unknownlibc.so.6 0000003BD661ECDD Unknown Unknown Unknownmksurfdata_map 0000000000409B29 Unknown Unknown Unknown ERROR in mksurfdata_map: 44544
------------------------------------------------------------------------------------------------------./mksurfdata.pl -r usrspec -usr_gname $GRIDNAME -usr_gdate $CDATE -y 2000 -usr_mapdir /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata -pft_frc 95,5 -pft_idx 4,0 -soil_cly 31 -soil_snd 30 -soil_col 18CSMDATA is /vol6/home/cmip_fang/cesm1_2_1/inputdata resolution: 1x1_maduo rcp=-999.9 sim_year = 2000namelist: namelist&clmexp nglcec = 0 mksrf_fgrid = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fpft = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fglacier = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_GLOBE-Gardner_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fsoicol = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_furban = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_LandScan2004_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fmax = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_USGS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_forganic = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_5x5min_ISRIC-WISE_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flai = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fharvest = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flakwat = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fwetlnd = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fvocef = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fsoitex = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_5x5min_IGBP-GSDP_to_1x1_maduo_nomask_aave_da_c141217.nc' map_furbtopo = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_flndtopo = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fgdp = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fpeat = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fabm = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc' map_ftopostats = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fvic = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.9x1.25_GRDC_to_1x1_maduo_nomask_aave_da_c141217.nc' map_fch4 = '/vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_360x720cru_cruncep_to_1x1_maduo_nomask_aave_da_c141217.nc' mksrf_fsoitex = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_soitex.10level.c010119.nc' mksrf_forganic = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_organic_10level_5x5min_ISRIC-WISE-NCSCD_nlev7_c120830.nc' mksrf_flakwat = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_LakePnDepth_3x3min_simyr2004_c111116.nc' mksrf_fwetlnd = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_lanwat.050425.nc' mksrf_fmax = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_fmax_3x3min_USGS_c120911.nc' mksrf_fglacier = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_glacier_3x3min_simyr2000.c120926.nc' mksrf_fvocef = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vocef_0.5x0.5_simyr2000.c110531.nc' mksrf_furbtopo = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topo.10min.c080912.nc' mksrf_flndtopo = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/topodata_10min_USGS_071205.nc' mksrf_fgdp = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVHRR_simyr2000.c130228.nc' mksrf_fpeat = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_AVHRR_simyr2000.c130228.nc' mksrf_fabm = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVHRR_simyr2000.c130201.nc' mksrf_ftopostats = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topostats_1km-merge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc' mksrf_fvic = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GRDC_simyr2000.c130307.nc' mksrf_fch4 = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_ch4inversion_360x720_cruncep_simyr2000.c130322.nc' outnc_double = .true. all_urban = .false. no_inlandwet = .true. mksrf_furban = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_urban_0.05x0.05_simyr2000.c120621.nc' soil_clay = 31 soil_sand = 30 pft_frc = 95,5 pft_idx = 4,0 mksrf_fvegtyp = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_landuse_rc2000_c090630.nc' mksrf_fsoicol = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc' mksrf_flai = '/vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5.simyr1850-2005.c090630/mksrf_lai_global_c090506.nc' fsurdat = 'surfdata_1x1_maduo_simyr2000_c141221.nc' fsurlog = 'surfdata_1x1_maduo_simyr2000_c141221.log' mksrf_fdynuse = ' ' fdyndat = ' ' /./mksurfdata_map < namelist Attempting to initialize control settings ..... Attempting to create surface boundary data .....------------------------------------------------------------ mksrf_fgrid = /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0. 5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc mksrf_gridtype = global Output ALL data in file as 64-bit Set wetland to 0% over land Replace soil clay % for all points with: 31.0000000000000 Replace soil sand % for all points with: 30.0000000000000 Set PFT fraction to : 95.0000000000000 5.00000000000000 With PFT index : 4 0 Output ALL data in file as 100% vegetated calling domain_read finished domain_read fsurdat is 2d lat/lon grid nlon= 1 nlat= 1 (OPNFIL): Successfully opened file surfdata_1x1_maduo_simyr2000_c141221.log on unit= 99 mksrf_gridtype = global Attempting to make PFTs ..... Creating surface datasets with the standard # of PFTs = 16 domain_clean WARN: clean domain unecessary Successfully made PFTs Attempting to make %lake and %wetland ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK domain_clean: cleaning 25920000 Successfully made %lake Attempting to make %wetland ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK domain_clean: cleaning 259200 Successfully made %wetland Attempting to make %glacier ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open glacier file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_glacier_3x3min_ simyr2000.c120926.nc domain_clean: cleaning 25920000 Successfully made %glacier Attempting to make %sand and %clay ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil texture file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_soitex.10level. c010119.nc domain_clean: cleaning 9331200 Successfully made %sand and %clay Attempting to make soil color classes ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil color file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/pftlandusedyn.0.5x0.5 .simyr1850-2005.c090630/mksrf_soilcol_global_c090324.nc nsoicol = 20(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 domain_clean: cleaning 259200 Successfully made soil color classes Attempting to make %fmax ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open soil fmax file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_fmax_3x3min_USG S_c120911.nc(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_USGS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 4147200 x 1 * number of non-zero elements: 4 Successfully made %fmax domain_clean: cleaning 4147200 Attempting to make GDP..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open GDP file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_gdp_0.5x0.5_AVH RR_simyr2000.c130228.nc domain_clean: cleaning 259200 Successfully made GDP Attempting to make peat ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open peat file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_peatf_0.5x0.5_A VHRR_simyr2000.c130228.nc domain_clean: cleaning 259200 Successfully made peat Attempting to make agricultural fire peak month data ..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.5x0.5_AVHRR_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 259200 x 1 * number of non-zero elements: 1 Open agricultural fire peak month file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_abm_0.5x0.5_AVH RR_simyr2000.c130201.nc domain_clean: cleaning 259200 Successfully made Agricultural fire peak month Attempting to make %urban .....(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_LandScan2004_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 25920000 x 1 * number of non-zero elements: 11 domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK Open urban file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_urban_0.05x0.05 _simyr2000.c120621.nc Successfully made %urban Attempting to make urban region ..... Successfully made urban region domain_clean: cleaning 25920000 Attempting to make elevation ..... domain_read_dims_2d read lon and lat dims from lsmlon/lsmlat domain_read initialized domain Open elevation file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/topodata_10min_USGS_0 71205.nc(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_10x10min_nomask_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 2332800 x 1 * number of non-zero elements: 2 domain_clean: cleaning 2332800 Successfully made elevation Attempting to make Topography statistics..... domain_read_dims_1d read 1-d length from num_pixels domain_read initialized domain(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 125599447 x 1 * number of non-zero elements: 40 Open Topography file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_topostats_1km-m erge-10min_HYDRO1K-merge-nomask_simyr2000.c130402.nc domain_clean: cleaning 125599447 Successfully made Topography statistics Attempting to make VIC parameters..... domain_read_dims_2d read lon and lat dims from lsmlon/lsmlat domain_read initialized domain domain_read read mask(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_0.9x1.25_GRDC_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 55296 x 1 * number of non-zero elements: 1 Open VIC parameter file: /vol6/home/cmip_fang/cesm1_2_1/inputdata/lnd/clm2/rawdata/mksrf_vic_0.9x1.25_GR DC_simyr2000.c130307.nc domain_clean: cleaning 55296 Successfully made VIC parameters Attempting to make lake parameters..... domain_read_dims_2d read lon and lat dims from lon/lat domain_read initialized domain domain_read read LANDMASK(gridmap_map_read) reading mapping matrix data...(gridmap_map_read) * file name : /vol6/home/cmip_fang/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/map_3x3min_MODIS_to_1x1_maduo_nomask_aave_da_c141217.nc * matrix dimensions rows x cols : 25920000 x 1 * number of non-zero elements: 10 domain_checksame ERROR: input domain lon and gridmap lon not the same at ni = 18019947 domain lon= 0.000000000000000E+000 gridmap lon= 97.3250122070312 forrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source libc.so.6 0000003BD6681484 Unknown Unknown Unknownmksurfdata_map 0000000000477773 Unknown Unknown Unknownmksurfdata_map 00000000004103F6 mkdomainmod_mp_do 883 mkdomainMod.F90mksurfdata_map 0000000000431907 mklanwatmod_mp_mk 467 mklanwatMod.F90mksurfdata_map 0000000000448E78 MAIN__ 620 mksurfdat.F90mksurfdata_map 0000000000409C2C Unknown Unknown Unknownlibc.so.6 0000003BD661ECDD Unknown Unknown Unknownmksurfdata_map 0000000000409B29 Unknown Unknown Unknown ERROR in mksurfdata_map: 44544