243140107@qq_com
New Member
Dear all, when running the first test of CLM3.5, an error occoured. The filepath of 'surfdata_64x128_c070501.nc' is right. I don't know how to solve this problem, thank you for your attention and guidence.SincerelyChen 1 pes participating in computation-----------------------------------NODE# NAME
( 0) ln01
Read in prof_inparm namelist from: lnd.stdin
PERF_SETOPTS: Using profile_disable= F profile_timer= 9
profile_depth_limit= 99999 profile_detail_limit= 0
profile_barrier= F profile_single_file= T
(shr_orb_params) Calculate characteristics of the orbit:
(shr_orb_params) SVN $Id: shr_orb_mod.F90 1573 2006-08-08 20:04:32Z erik $
(shr_orb_params) SVN $URL:
(shr_orb_params) Calculate orbit for year: 1950
(shr_orb_params) ------ Computed Orbital Parameters ------
(shr_orb_params) Eccentricity = 1.672393E-02
(shr_orb_params) Obliquity (deg) = 2.344627E+01
(shr_orb_params) Obliquity (rad) = 4.092146E-01
(shr_orb_params) Long of perh(deg) = 1.020390E+02
(shr_orb_params) Long of perh(rad) = 4.922510E+00
(shr_orb_params) Long at v.e.(rad) = -3.262537E-02
(shr_orb_params) -----------------------------------------
CLM MODEL version 3.5
Attempting to initialize the land model .....
Attempting to initialize run control settings .....
Read in clm_inparm namelist from: lnd.stdin
Successfully initialized run control settings
define run:
run type = initial
case title =
input data files:
PFT physiology =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/pftdata/pft-physiology.c070207
surface data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
flndtopo not set
fatmgrid not set, using fsurdat
atm grid data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
fatmlndfrc not set, using fatmgrid
land frac data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
fatmtopo not set
NOT using input data for nitrogen deposition
NOT using dynamic input data for nitrogen deposition
initial data created by model
atmospheric forcing data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/NCEPDATA.Qian.T62.c051024
Restart parameters:
restart pointer file directory = /gpfshome/zhanglei/
restart pointer file name = lnd.test01.rpointer
initial datasets will not be produced
model physics parameters:
flag for random perturbation test is not set
solar radiation frequency (iterations) = 2
maxpatch_pft = 4
allocate_all_vegpfts = F
nsegspc = 20
Attempting to read alatlon from fatmgrid
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
latlon_check ns = 8192
latlon_check ni,nj = 128 64
latlon_check set = domain_set
latlon_check regional = F
latlon_check edgeNESW = 90.00000000000000
358.5937500000000 -90.00000000000000 -1.406250000000000
latlon_check lonc = 0.000000000000000 357.1875000000000
latlon_check latc = -87.86379883923262 87.86379883923262
latlon_check lonw = -1.406250000000000 355.7812500000000
latlon_check lone = 1.406250000000000 358.5937500000000
latlon_check lats = -90.00000000000000 86.48016120274501
latlon_check latn = -86.48016120274499 90.00000000000000
amask size/min/max 8192 1 1
Attempting to read llatlon from fsurdat
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
latlon_check ns = 8192
latlon_check ni,nj = 128 64
latlon_check set = domain_set
latlon_check regional = F
latlon_check edgeNESW = 90.00000000000000
358.5937500000000 -90.00000000000000 -1.406250000000000
latlon_check lonc = 0.000000000000000 357.1875000000000
latlon_check latc = -87.86379883923262 87.86379883923262
latlon_check lonw = -1.406250000000000 355.7812500000000
latlon_check lone = 1.406250000000000 358.5937500000000
latlon_check lats = -90.00000000000000 86.48016120274501
latlon_check latn = -86.48016120274499 90.00000000000000
initialize1: set llatlon =~ alatlon:continue 0.000000000000000
0.000000000000000
latlon_setsame: copying 128 64
precompute total anumg 8192 8192 20.00000000000000
Atm Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Decomposition Characteristics
clumps per process = 1
gsMap Characteristics
atm gsmap glo num of segs = 1
proc= 0 beg atmcell = 1 end atmcell = 8192
total atmcells per proc = 8192
proc= 0 atm ngseg = 1 atm nlseg = 1
proc= 0 nclumps = 1
setgatm overlapgrid,latlongrid = T T
Atm Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Surface Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Decomposition Characteristics
clumps per process = 1
gsMap Characteristics
lnd gsmap glo num of segs = 1
atm gsmap glo num of segs = 1
Attempting to read agdomain from fatmgrid
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
Attempting to read atm landfrac from fatmlndfrc
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
netcdf error from surfrd_get_frac
netcdf strerror = NetCDF: Variable not found
ENDRUN: called without a message string
MPI_Abort: error code = 1
( 0) ln01
Read in prof_inparm namelist from: lnd.stdin
PERF_SETOPTS: Using profile_disable= F profile_timer= 9
profile_depth_limit= 99999 profile_detail_limit= 0
profile_barrier= F profile_single_file= T
(shr_orb_params) Calculate characteristics of the orbit:
(shr_orb_params) SVN $Id: shr_orb_mod.F90 1573 2006-08-08 20:04:32Z erik $
(shr_orb_params) SVN $URL:
(shr_orb_params) Calculate orbit for year: 1950
(shr_orb_params) ------ Computed Orbital Parameters ------
(shr_orb_params) Eccentricity = 1.672393E-02
(shr_orb_params) Obliquity (deg) = 2.344627E+01
(shr_orb_params) Obliquity (rad) = 4.092146E-01
(shr_orb_params) Long of perh(deg) = 1.020390E+02
(shr_orb_params) Long of perh(rad) = 4.922510E+00
(shr_orb_params) Long at v.e.(rad) = -3.262537E-02
(shr_orb_params) -----------------------------------------
CLM MODEL version 3.5
Attempting to initialize the land model .....
Attempting to initialize run control settings .....
Read in clm_inparm namelist from: lnd.stdin
Successfully initialized run control settings
define run:
run type = initial
case title =
input data files:
PFT physiology =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/pftdata/pft-physiology.c070207
surface data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
flndtopo not set
fatmgrid not set, using fsurdat
atm grid data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
fatmlndfrc not set, using fatmgrid
land frac data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
fatmtopo not set
NOT using input data for nitrogen deposition
NOT using dynamic input data for nitrogen deposition
initial data created by model
atmospheric forcing data =
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/NCEPDATA.Qian.T62.c051024
Restart parameters:
restart pointer file directory = /gpfshome/zhanglei/
restart pointer file name = lnd.test01.rpointer
initial datasets will not be produced
model physics parameters:
flag for random perturbation test is not set
solar radiation frequency (iterations) = 2
maxpatch_pft = 4
allocate_all_vegpfts = F
nsegspc = 20
Attempting to read alatlon from fatmgrid
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
latlon_check ns = 8192
latlon_check ni,nj = 128 64
latlon_check set = domain_set
latlon_check regional = F
latlon_check edgeNESW = 90.00000000000000
358.5937500000000 -90.00000000000000 -1.406250000000000
latlon_check lonc = 0.000000000000000 357.1875000000000
latlon_check latc = -87.86379883923262 87.86379883923262
latlon_check lonw = -1.406250000000000 355.7812500000000
latlon_check lone = 1.406250000000000 358.5937500000000
latlon_check lats = -90.00000000000000 86.48016120274501
latlon_check latn = -86.48016120274499 90.00000000000000
amask size/min/max 8192 1 1
Attempting to read llatlon from fsurdat
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
latlon_check ns = 8192
latlon_check ni,nj = 128 64
latlon_check set = domain_set
latlon_check regional = F
latlon_check edgeNESW = 90.00000000000000
358.5937500000000 -90.00000000000000 -1.406250000000000
latlon_check lonc = 0.000000000000000 357.1875000000000
latlon_check latc = -87.86379883923262 87.86379883923262
latlon_check lonw = -1.406250000000000 355.7812500000000
latlon_check lone = 1.406250000000000 358.5937500000000
latlon_check lats = -90.00000000000000 86.48016120274501
latlon_check latn = -86.48016120274499 90.00000000000000
initialize1: set llatlon =~ alatlon:continue 0.000000000000000
0.000000000000000
latlon_setsame: copying 128 64
precompute total anumg 8192 8192 20.00000000000000
Atm Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Decomposition Characteristics
clumps per process = 1
gsMap Characteristics
atm gsmap glo num of segs = 1
proc= 0 beg atmcell = 1 end atmcell = 8192
total atmcells per proc = 8192
proc= 0 atm ngseg = 1 atm nlseg = 1
proc= 0 nclumps = 1
setgatm overlapgrid,latlongrid = T T
Atm Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Surface Grid Characteristics
longitude points = 128
latitude points = 64
total number of gridcells = 8192
Decomposition Characteristics
clumps per process = 1
gsMap Characteristics
lnd gsmap glo num of segs = 1
atm gsmap glo num of segs = 1
Attempting to read agdomain from fatmgrid
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
Attempting to read atm landfrac from fatmlndfrc
(GETFIL): attempting to find local file surfdata_64x128_c070501.nc
(GETFIL): using
/gpfshome/zhanglei/chenlj/clm/inputdata/lnd/clm2/surfdata/surfdata_64x128_c070501.nc
netcdf error from surfrd_get_frac
netcdf strerror = NetCDF: Variable not found
ENDRUN: called without a message string
MPI_Abort: error code = 1