ERROR(./PTCLMmkdata):: Error running command

[Albert]

Hi all,
I'm learning to use PTCLM. I use CESM2.1.3 with netcdf 4.4.1, ESMF5.2.0.
When I used this command:

./PTCLMmkdata -s US-UMB -d $CSMDATA --donot_use_tower_yrs --cime_root $CIMEROOT_ALBERT
I had this problom:

---------------- PTCLMmkdata version PTCLM2_20200118-----------------------------

   ./PTCLMmkdata -s US-UMB -d /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata --donot_use_tower_yrs --cime_root /share/home/liujunzhi/liujunzhi/apps/CESM/cime

   OPTIONS:

Site name:                        US-UMB

Root CTSM directory:                    /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm
Root CIME directory:                    /share/home/liujunzhi/liujunzhi/apps/CESM/cime
** Surface data file will be built using site-level data when available unless otherwise specified **

    Extract PFT data from gridded files:        False
    Extract soil data from gridded files:        False

Open Site data file: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/PTCLM_sitedata/PTCLMDATA_sitedata.txt

CESM input data directory:                /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata
----------------------------------------------------------------

Write /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/README.PTCLM with command line
Run command: /bin/chmod +x /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/shell_commands
Making input files for the point (this may take a while if creating transient datasets)
Creating map file for a point with no ocean
lat=45.5598
/share/apps/ncl-6.5.0/bin/ncl
Run command: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/mknoocnmap.pl -p 45.5598,275.2862 -name 1x1pt_US-UMB > /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mknoocnmap.log
mapfile = /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/map_1x1pt_US-UMB_noocean_to_1x1pt_US-UMB_nomask_aave_da_200715.nc
scripgridfile = /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.nc
Creating data domain
Run command: /share/home/liujunzhi/liujunzhi/apps/CESM/cime/tools/mapping/gen_domain_files/gen_domain -m /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/map_1x1pt_US-UMB_noocean_to_1x1pt_US-UMB_nomask_aave_da_200715.nc -o navy -l 1x1pt_US-UMB -c 'Running gen_domain from PTCLMmkdata' > /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/gen_domain.log
domainfile = domain.lnd.1x1pt_US-UMB_navy.200715.nc


Re-create surface dataset:  


Re-create mapping files for surface dataset:
Run command: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/mkmapdata.sh --gridfile /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.nc --res 1x1pt_US-UMB --gridtype regional -v > /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mkmapdata.log
rm: cannot remove ‘PET*.Log’: No such file or directory
forrtl: severe (71): integer divide by zero
Image              PC                Routine            Line        Source            
ESMF_RegridWeight  00000000004281A4  for__signal_handl     Unknown  Unknown
libpthread-2.17.s  00002B74E42146D0  Unknown               Unknown  Unknown
ESMF_RegridWeight  000000000040C725  Unknown               Unknown  Unknown
ESMF_RegridWeight  000000000040A262  Unknown               Unknown  Unknown
libc-2.17.so       00002B74EEAFC445  __libc_start_main     Unknown  Unknown
ESMF_RegridWeight  000000000040A169  Unknown               Unknown  Unknown
ERROR(./PTCLMmkdata):: Error running command: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/mkmapdata.sh --gridfile /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.nc --res 1x1pt_US-UMB --gridtype regional -v > /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mkmapdata.log
Aborted (core dumped)

AND the log file is :

  1 /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/mkmapdata.sh
  2 Script to create mapping files required by mksurfdata_map
  3 query command is /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/../../bld/queryDefaultNamelist.pl -silent -namelist clmexp      -justvalue -options sim_year=2000 -csmdata /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata
  4
  5 Using user specified scrip grid file: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_U    S-UMB_nomask_c200715.nc
  6 Output grid resolution is 1x1pt_US-UMB
  7 /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/mkmapdata/../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -justvalue -optio    ns sim_year=2000 -csmdata /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata -var scripgriddata -res 0.5x0.5 -options lmask=AVHRR,glc_nec=1    0 -onlyfiles
25 Hostname = liujunzhi
26 Machine liujunzhi NOT recognized
27 Creating mapping file: map_0.5x0.5_AVHRR_to_1x1pt_US-UMB_nomask_aave_da_c200715.nc
28 From input grid: /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc
29 For output grid: /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.    nc
30
31 /share/apps/esmf-5.2.0-intel/bin/binO/Linux.intel.64.intelmpi.default/ESMF_RegridWeightGen --ignore_unmapped -s /share/home/liujunzhi/liujunzhi/apps/    cesm_datafile/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc -d /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/too    ls/PTCLM/mydatafiles/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.nc -m conserve -w map_0.5x0.5_AVHRR_to_1x1pt_US-UMB_nomask_aave_da_c200715.nc     --dst_regional --src_type SCRIP --dst_type SCRIP
32 MPI startup(): I_MPI_F77 environment variable is not supported.
33 MPI startup(): To check the list of supported variables, use the impi_info utility or refer to https://software.intel.com/en-us/mpi-library/documenta    tion/get-started.
34  use default pole: None
35  Starting weight generation with these inputs:
36    Source File:
37  /share/home/liujunzhi/liujunzhi/apps/cesm_datafile/inputdata/lnd/clm2/mappingda
38  ta/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc
39    Destination File:
40  /share/home/liujunzhi/liujunzhi/apps/CESM/components/clm/tools/PTCLM/mydatafile
41  s/1x1pt_US-UMB/SCRIPgrid_1x1pt_US-UMB_nomask_c200715.nc
42    Weight File: map_0.5x0.5_AVHRR_to_1x1pt_US-UMB_nomask_aave_da_c200715.nc
43    Source File is in SCRIP format
44    Source Grid is a global grid
45    Source Grid is a logically rectangular grid
46    Destination File is in SCRIP format
47    Destination Grid is a regional grid
48    Destination Grid is a logically rectangular grid
49    Regrid Method: conserve
50    Pole option: NONE
51 Error status returned from mkmapdata script

Anyone have the same problem or know how to solved it?Please give me some advice?Thank you.

 

[katiemurenbeeld@u_boisestate_edu]

Hi Albert,

I replied to the message here https://bb.cgd.ucar.edu/cesm/thread...ata-error-command-does-not-exist-export.5382/

I was able to get PTCLM to work. The steps I took are in the reply. I work on Cheyenne though, so there may be some differences. It looks like you are working from a different computer.

I hope it helps.

Cheers,
Katie