Error running link command: No such file or directory

[xyli@geo_uio_no]

Dear all,

Have you ever seen the following error when compiling the code?
Attached please kindly find the log file.

System: Ubuntu 18.04.2 LTS

$ create_newcase --case /opt/uio/cesm/cases/FKESSLER_190513 --compset FKESSLER --res T31_g37 --machine espresso --run-unsupported
$ ./case.setup
$ ./case.build


f951: Warning: Nonexistent include directory '/opt/uio/cesm/work/FKESSLER_190513/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include' [-Wmissing-include-dirs]
Error running link command: No such file or directory
make[2]: *** [pio/CMakeFiles/pio.dir/build.make:526: pio/libpio.a] Error 2
make[1]: *** [CMakeFiles/Makefile2:94: pio/CMakeFiles/pio.dir/all] Error 2
make: *** [Makefile:87: all] Error 2

 

[tracy@zedat_fu-berlin_de]

Hi xiangyu,I have a similar problem (using CESM 2.1.0) alltough I'm also running into other issues. Were you able to solve this?When I try to build a case I get warnings like: Warning: Nonexistent include directory "/work/users/tki/cesm/scratch/QPC6_test_2/bld/gnu/openmpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include"But later on I run into other more serious errors so I don't know what the actual reason for the failure is.I've attached our machine configuration and the buildlog output if you or someone else wants to look and has an idea. 

 

[jedwards]

THose warnings should just be warnings and not cause a failure - Tracy you didn't tell us the actual problem or post any attachments.  

 

[tracy@zedat_fu-berlin_de]

Hi jedwards,I hadn't seen that I have to click "display" for the attachment but it should be there now.The error is:

/work/users/tki/cesm_2_1_0_new/cime/src/externals/pio1/pio/nf_mod.F90:1761.26:

                   ierr = nf90_def_var_deflate(File%fh,vardesc%varid,0,1,1)
                          1
Error: Function 'nf90_def_var_deflate' at (1) has no IMPLICIT type
make[2]: *** [pio/CMakeFiles/pio.dir/build.make:140: pio/CMakeFiles/pio.dir/nf_mod.F90.o] Error 1
make[2]: *** Waiting for unfinished jobs....

 

 

[abdulla_sakalli@iste_edu_tr]

Dear All,I'm getting the same issue during my case build. Could you solve the problem?My Errors is almost the samef951: Warning: Nonexistent include directory ‘/home/as2/CESM/projects/scratch/denemeI2000Clm50VicSecond/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include’ [-Wmissing-include-dirs]/home/as2/CESM/cesm/cime/src/externals/pio1/pio/nf_mod.F90:1761:26:                     ierr = nf90_def_var_deflate(File%fh,vardesc%varid,0,1,1)                          1Error: Function ‘nf90_def_var_deflate’ at (1) has no IMPLICIT type/home/as2/CESM/cesm/cime/src/externals/pio1/pio/ionf_mod.F90:205:24:                     comm=File%iosystem%io_comm, info=File%iosystem%info)                        1Error: Keyword argument ‘comm’ at (1) is not in the procedure/home/as2/CESM/cesm/cime/src/externals/pio1/pio/ionf_mod.F90:207:61:                   ierr = nf90_open(fname, amode, File%fh,info=File%iosystem%info)                                                             1Error: Keyword argument ‘info’ at (1) is not in the procedure/home/as2/CESM/cesm/cime/src/externals/pio1/pio/ionf_mod.F90:83:20: kind regards

 

[jedwards]

This looks like a cmake error - I see CMAKE_AR-NOTFOUND in your pio.bldlog. I have no idea why cmake can't find ar.