Error while compiling CESM1.2.2 on Titan

[jhe6@ncsu_edu]

Hi,I'm trying to run CESM1.2.2 on Titan using F_2000_CAM5 componset.I use pgi compiler. Below is the error message:ftn  -c -I.  -I/lustre/atlas/scratch/jhe/atm101/case1a/bld/pgi/mpich/nodebug/nothreads/include -I/lustre/atlas/scratch/jhe/atm101/case1a/bld/pgi/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/cray/netcdf-hdf5parallel/4.3.3.1/PGI/15.3/include -I/opt/cray/mpt/7.2.5/gni/mpich2-pgi/15.3/include -I/opt/cray/parallel-netcdf/1.6.1/PGI/15.3/include -I/lustre/atlas/scratch/jhe/atm101/case1a/bld/pgi/mpich/nodebug/nothreads/include -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/csm_share/shr -I. -I/ccs/home/jhe/cases/case1a/SourceMods/src.clm -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/cpl_share -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/util_share -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/clm4_0/main -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeophys -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem -I/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/cpl_mct -I/lustre/atlas/scratch/jhe/atm101/case1a/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -O2  -nomp  -DMAXPATCH_PFT=17 -DCNL  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16   -DLINUX  -DCNL -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/util_share/decompInitMod.F90PGF90-S-0155-lsize is use associated and cannot be redeclared (/autofs/nccs-svm1_home1/jhe/cesm1_2_2/models/lnd/clm/src/util_share/decompInitMod.F90: 350)  0 inform,   0 warnings,   1 severes, 0 fatal for decompinit_glcpgmake: *** [decompInitMod.o] Error 2 gmake: *** Waiting for unfinished jobs....  Does any one konw how to fix this problem? Thanks,

 

[jedwards]

Rename the local variable lsize to something else to avoid the conflict.  Make sure and change all of the instances of lsize in the subroutine.  

 

[jhe6@ncsu_edu]

Thanks for the help!After renaming lsize in decompInitMod.F90, there is similar error for another file lnd_comp_mct.F90.But after rename lsize in lnd_comp_mct.F90, the model can compile and run succsfully.Thanks again!

 

[lilchgs@163_com]

Hello,anyonethere?I also got this on my own machine. But after changing the "lsize" to "psize" in the first and second subroutines of the lnd_comp_mct.F90,it shows: 
    schedule                50 millisecs    15%
    Total time             316 millisecs
mpif90 -c -I.  -I/mnt/guest1/cesm/2cesm1_2_2/case/2test02/bld/pgi/mpich/nodebug/nothreads/include -I/mnt/guest1/cesm/2cesm1_2_2/case/2test02/bld/pgi/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/mnt/guest1/obj-pgi/netcdf/include -I/mnt/guest1/obj-pgi/mpich/include -I/mnt/guest1/cesm/2cesm1_2_2/case/2test02/bld/pgi/mpich/nodebug/nothreads/include -I/mnt/guest1/cesm/2cesm1_2_2/models/csm_share/shr -I. -I/mnt/guest1/cesm/2cesm1_2_2/scripts/2test02/SourceMods/src.clm -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_share -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/util_share -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/clm4_0/main -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/clm4_0/biogeophys -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem -I/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct -I/mnt/guest1/cesm/2cesm1_2_2/case/2test02/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -nomp  -DMAXPATCH_PFT=17 -DCN -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16   -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90

PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 286)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 289)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 292)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 295)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 335)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 338)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 345)
PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 348)
PGF90-S-0038-Symbol, mct_gsmap_psize, has not been explicitly declared (/mnt/guest1/cesm/2cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90)
  0 inform,   0 warnings,   9 severes, 0 fatal for lnd_init_mct
gmake: *** [lnd_comp_mct.o] Error 2

  how could I slove that? Thank you. 

 

[benbs@mit_edu]

I am having the exact same issue on our own machine. I changed lsize to psize and now have this: mpif90  -c -I.  -I/net/fs11/d0/benbs/cesm1_2_2/cases/cesm.pg13.8.test.4/bld/pgi/openmpi/nodebug/nothreads/include -I/net/fs11/d0/benbs/cesm1_2_2/cases/cesm.pg13.8.test.4/bld/pgi/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/pgi/16.9/pkg/netcdf/20161122/include -I/home/software/pgi/16.9/pkg/openmpi/1.10.5/include/../include -I/net/fs11/d0/benbs/cesm1_2_2/cases/cesm.pg13.8.test.4/bld/pgi/openmpi/nodebug/nothreads/include -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/csm_share/shr -I. -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm.pg13.8.test.4/SourceMods/src.clm -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_share -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/util_share -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/clm4_0/main -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeophys -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/clm4_0/biogeochem -I/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct -I/net/fs11/d0/benbs/cesm1_2_2/cases/cesm.pg13.8.test.4/bld/lib/include  -i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee   -nomp  -DMAXPATCH_PFT=17 -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16   -DLINUX -DCPRPGI  -DHAVE_SLASHPROC -Mfree   /net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 286)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 289)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 292)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 295)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 335)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 338)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 345)PGF90-S-0155-Could not resolve generic procedure mct_avect_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 348)PGF90-S-0038-Symbol, mct_gsmap_psize, has not been explicitly declared (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90)  0 inform,   0 warnings,   9 severes, 0 fatal for lnd_init_mctPGF90-S-0155-Could not resolve generic procedure mct_ggrid_init (/net/fs11/d0/benbs/svante.cesm.test.dir/cesm1_2_2/models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90: 1152)  0 inform,   0 warnings,   1 severes, 0 fatal for lnd_domain_mct/net/fs11/d0/benbs/svante.cesm.test.dir/cesm.pg13.8.test.4/Tools/Makefile:639: recipe for target 'lnd_comp_mct.o' failedgmake: *** [lnd_comp_mct.o] Error 2 Please help, Ben  

 

[rmokos@ncsa_illinois_edu]

I'm not a CESM expert, but I ran into the same lsize problem.  Two things come to mind:1. When I changed the name of lsize, I changed it to something different in each routine.  So in the lnd_init_mct routine, I change lsize to lsize_lim, and in lnd_run_mct, I changed lsize to lsize_lrm.2. When you change lsize in the routine calls, like mct_aVect_init, I think you need to make sure that you only change what lsize is equal to.  So if you changed "lsize" to "psize", the call to mct_aVect_init should be:call mct_aVect_init(x2l_l, rList=seq_flds_x2l_fields, lsize=psize)not:call mct_aVect_init(x2l_l, rList=seq_flds_x2l_fields, psize=psize)I hope that helps.