projy001@snu_ac_kr
New Member
I am trying to install and run CESM2. Following https://ncar.github.io/CAM/doc/build/html/users_guide/atmospheric-configurations.html, 4.2.2.2.1 . sample the base run, there was no problem to build it with cray and gnu compiler and I could get "cesm.exe" in both compiler without error. But when I tried to do "case.submit" with cesm.exe, it failed with both execute files.
1. using cesm.exe compiled cray-compiler- Err: "freelocale.c: No such file directory" After submitting, it gave me "Segmentfault Error" with core file. The core file message is "freelocale.c: No such file directory". Please check the attached files. 2. using cesm.exe compiled gnu - Err: "_HR_ already on list" After submitting, I got an error message related with "_HR_alrealy on list" but I could not find any _HR_ list in masterlist_addfld code and log. Would you please let me know how to solve this problem? I really want to cry. The result of preview_run is like below:---------------------------------------------------CASE INFO: nodes: 4 total tasks: 96 tasks per node: 24 thread count: 1 BATCH INFO: FOR JOB: case.run ENV: module command is /opt/modules/default/bin/modulecmd python rm PrgEnv-intel PrgEnv-cray PrgEnv-gnu intel cce cray-parallel-netcdf cray-parallel-hdf5 pmi cray-libsci cray-mpich2 cray-mpich cray-netcdf cray-hdf5 cray-netcdf-hdf5parallel craype-sandybridge craype-ivybridge craype module command is /opt/modules/default/bin/modulecmd python load PrgEnv-gnu module command is /opt/modules/default/bin/modulecmd python switch gcc gcc/6.3.0 module command is /opt/modules/default/bin/modulecmd python swap alps alps/5.2.4-2.0502.9822.32.1.ari module command is /opt/modules/default/bin/modulecmd python load papi/5.5.1.1 module command is /opt/modules/default/bin/modulecmd python swap craype/2.2.1 craype/2.5.10 module command is /opt/modules/default/bin/modulecmd python switch cray-libsci cray-libsci/16.11.1 module command is /opt/modules/default/bin/modulecmd python switch cray-mpich/7.1.1 cray-mpich/7.5.5 module command is /opt/modules/default/bin/modulecmd python load cray-netcdf-hdf5parallel/4.4.1.1 cray-hdf5-parallel/1.10.0.1 cray-parallel-netcdf/1.8.0 cmake/2.8.12.1 subversion/1.8.11 Setting Environment MPICC= cc Setting Environment MPICXX= CC Setting Environment MPIFC= ftn Setting Environment SCC= cc Setting Environment SCXX= CC Setting Environment SFC= ftn Setting Environment OMP_STACKSIZE=256M Setting Environment NETCDF_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_C_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_FORTRAN_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment PNETCDFROOT=/opt/cray/parallel-netcdf/1.8.0/GNU/5.1 SUBMIT CMD: qsub -q normal -l walltime=00:20:00 -v ARGS_FOR_SCRIPT='--resubmit' .case.run FOR JOB: case.st_archive ENV: module command is /opt/modules/default/bin/modulecmd python rm PrgEnv-intel PrgEnv-cray PrgEnv-gnu intel cce cray-parallel-netcdf cray-parallel-hdf5 pmi cray-libsci cray-mpich2 cray-mpich cray-netcdf cray-hdf5 cray-netcdf-hdf5parallel craype-sandybridge craype-ivybridge craype module command is /opt/modules/default/bin/modulecmd python load PrgEnv-gnu module command is /opt/modules/default/bin/modulecmd python switch gcc gcc/6.3.0 module command is /opt/modules/default/bin/modulecmd python swap alps alps/5.2.4-2.0502.9822.32.1.ari module command is /opt/modules/default/bin/modulecmd python load papi/5.5.1.1 module command is /opt/modules/default/bin/modulecmd python swap craype/2.2.1 craype/2.5.10 module command is /opt/modules/default/bin/modulecmd python switch cray-libsci cray-libsci/16.11.1 module command is /opt/modules/default/bin/modulecmd python switch cray-mpich/7.1.1 cray-mpich/7.5.5 module command is /opt/modules/default/bin/modulecmd python load cray-netcdf-hdf5parallel/4.4.1.1 cray-hdf5-parallel/1.10.0.1 cray-parallel-netcdf/1.8.0 cmake/2.8.12.1 subversion/1.8.11 Setting Environment MPICC= cc Setting Environment MPICXX= CC Setting Environment MPIFC= ftn Setting Environment SCC= cc Setting Environment SCXX= CC Setting Environment SFC= ftn Setting Environment OMP_STACKSIZE=256M Setting Environment NETCDF_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_C_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_FORTRAN_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment PNETCDFROOT=/opt/cray/parallel-netcdf/1.8.0/GNU/5.1 SUBMIT CMD: qsub -q normal -l walltime=0:20:00 -W depend=afterok:0 -v ARGS_FOR_SCRIPT='--resubmit' case.st_archive MPIRUN: aprun -n 96 -N 24 -d 1 /s3/scratch/nwpr/projy/tmpdir/base_run_case_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 -------------------------------------------------------------------------------------------------------------------------------------
1. using cesm.exe compiled cray-compiler- Err: "freelocale.c: No such file directory" After submitting, it gave me "Segmentfault Error" with core file. The core file message is "freelocale.c: No such file directory". Please check the attached files. 2. using cesm.exe compiled gnu - Err: "_HR_ already on list" After submitting, I got an error message related with "_HR_alrealy on list" but I could not find any _HR_ list in masterlist_addfld code and log. Would you please let me know how to solve this problem? I really want to cry. The result of preview_run is like below:---------------------------------------------------CASE INFO: nodes: 4 total tasks: 96 tasks per node: 24 thread count: 1 BATCH INFO: FOR JOB: case.run ENV: module command is /opt/modules/default/bin/modulecmd python rm PrgEnv-intel PrgEnv-cray PrgEnv-gnu intel cce cray-parallel-netcdf cray-parallel-hdf5 pmi cray-libsci cray-mpich2 cray-mpich cray-netcdf cray-hdf5 cray-netcdf-hdf5parallel craype-sandybridge craype-ivybridge craype module command is /opt/modules/default/bin/modulecmd python load PrgEnv-gnu module command is /opt/modules/default/bin/modulecmd python switch gcc gcc/6.3.0 module command is /opt/modules/default/bin/modulecmd python swap alps alps/5.2.4-2.0502.9822.32.1.ari module command is /opt/modules/default/bin/modulecmd python load papi/5.5.1.1 module command is /opt/modules/default/bin/modulecmd python swap craype/2.2.1 craype/2.5.10 module command is /opt/modules/default/bin/modulecmd python switch cray-libsci cray-libsci/16.11.1 module command is /opt/modules/default/bin/modulecmd python switch cray-mpich/7.1.1 cray-mpich/7.5.5 module command is /opt/modules/default/bin/modulecmd python load cray-netcdf-hdf5parallel/4.4.1.1 cray-hdf5-parallel/1.10.0.1 cray-parallel-netcdf/1.8.0 cmake/2.8.12.1 subversion/1.8.11 Setting Environment MPICC= cc Setting Environment MPICXX= CC Setting Environment MPIFC= ftn Setting Environment SCC= cc Setting Environment SCXX= CC Setting Environment SFC= ftn Setting Environment OMP_STACKSIZE=256M Setting Environment NETCDF_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_C_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_FORTRAN_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment PNETCDFROOT=/opt/cray/parallel-netcdf/1.8.0/GNU/5.1 SUBMIT CMD: qsub -q normal -l walltime=00:20:00 -v ARGS_FOR_SCRIPT='--resubmit' .case.run FOR JOB: case.st_archive ENV: module command is /opt/modules/default/bin/modulecmd python rm PrgEnv-intel PrgEnv-cray PrgEnv-gnu intel cce cray-parallel-netcdf cray-parallel-hdf5 pmi cray-libsci cray-mpich2 cray-mpich cray-netcdf cray-hdf5 cray-netcdf-hdf5parallel craype-sandybridge craype-ivybridge craype module command is /opt/modules/default/bin/modulecmd python load PrgEnv-gnu module command is /opt/modules/default/bin/modulecmd python switch gcc gcc/6.3.0 module command is /opt/modules/default/bin/modulecmd python swap alps alps/5.2.4-2.0502.9822.32.1.ari module command is /opt/modules/default/bin/modulecmd python load papi/5.5.1.1 module command is /opt/modules/default/bin/modulecmd python swap craype/2.2.1 craype/2.5.10 module command is /opt/modules/default/bin/modulecmd python switch cray-libsci cray-libsci/16.11.1 module command is /opt/modules/default/bin/modulecmd python switch cray-mpich/7.1.1 cray-mpich/7.5.5 module command is /opt/modules/default/bin/modulecmd python load cray-netcdf-hdf5parallel/4.4.1.1 cray-hdf5-parallel/1.10.0.1 cray-parallel-netcdf/1.8.0 cmake/2.8.12.1 subversion/1.8.11 Setting Environment MPICC= cc Setting Environment MPICXX= CC Setting Environment MPIFC= ftn Setting Environment SCC= cc Setting Environment SCXX= CC Setting Environment SFC= ftn Setting Environment OMP_STACKSIZE=256M Setting Environment NETCDF_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_C_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment NETCDF_FORTRAN_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/GNU/5.1 Setting Environment PNETCDFROOT=/opt/cray/parallel-netcdf/1.8.0/GNU/5.1 SUBMIT CMD: qsub -q normal -l walltime=0:20:00 -W depend=afterok:0 -v ARGS_FOR_SCRIPT='--resubmit' case.st_archive MPIRUN: aprun -n 96 -N 24 -d 1 /s3/scratch/nwpr/projy/tmpdir/base_run_case_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 -------------------------------------------------------------------------------------------------------------------------------------