I'm trying to switch running ctsm from MCT to NUOPC (by removing the
Given the location of the crash, I'm assuming this is likely due to dependencies (mpi, hdf5, netcdf, and/or esmf) not being installed correctly for parallel operation. As such I've uploaded the config log output for the hdf5 and netcdf builds for review. Unfortunately I don't have the logs for the esmf
--driver=mct
option, but I'm running into errors with the ctsm initialization. A fairly generic case will build successfully, but immediately crash upon run submission. Attached are the various bld and run logs.Given the location of the crash, I'm assuming this is likely due to dependencies (mpi, hdf5, netcdf, and/or esmf) not being installed correctly for parallel operation. As such I've uploaded the config log output for the hdf5 and netcdf builds for review. Unfortunately I don't have the logs for the esmf
gmake info
setup, but it looks I think in the case I was using the Linux.gfortran.default build_conf (I have a support email into esmf_support@ucar.edu about a different build failure in pursuit of running with NUOPC). Openmpi was installed as pre-built binary via apt and is 4.0.3-0ubuntu1. This is running on an ubuntu-based distro workstation with 2 16 core xeon nodes.git describe
: ctsm5.1.dev084./manage_externals/checkout_externals --status --verbose
:
Bash:
Processing externals description file : Externals.cfg
Processing externals description file : Externals_CLM.cfg
Processing externals description file : Externals_CISM.cfg
Processing externals description file : Externals_CDEPS.cfg
Checking status of externals: clm, fates, cism, source_cism, rtm, mosart, mizuroute, ccs_config, cime, cmeps, cdeps, fox, genf90, cpl7, share, mct, parallelio, doc-builder,
./ccs_config
clean sandbox, on ccs_config_cesm0.0.5
./cime
clean sandbox, on cime6.0.13
./components/cdeps
clean sandbox, on cdeps0.12.35
./components/cdeps/fox
clean sandbox, on 4.1.2.1
./components/cdeps/share/genf90
clean sandbox, on genf90_200608
./components/cism
clean sandbox, on cismwrap_2_1_95
./components/cism/source_cism
clean sandbox, on cism_main_2.01.011
./components/cmeps
clean sandbox, on cmeps0.13.47
./components/cpl7
clean sandbox, on cpl7.0.12
./components/mizuRoute
clean sandbox, on 34723c2e4df7caa16812770f8d53ebc83fa22360
./components/mosart
clean sandbox, on mosart1_0_45
./components/rtm
clean sandbox, on rtm1_0_78
e-o ./doc/doc-builder
-, not checked out --> v1.0.8
./libraries/mct
clean sandbox, on MCT_2.11.0
./libraries/parallelio
clean sandbox, on pio2_5_5
./share
clean sandbox, on share1.0.10
./src/fates
clean sandbox, on sci.1.55.4_api.22.1.0