geoxiyang@gmail_com
New Member
Hello, I am following the INSTALL instruction in the gen_domain_files folder and building it on Cheyenne but got a list of errors that seems to be related to the netcdf-mpi. Any suggestions? xiyang@cheyenne3:~/cesm2_0_0/cime/tools/mapping/gen_domain_files/src> (. ./.env_mach_specific.sh ; gmake)ifort -o ../gen_domain gen_domain.o -mkl=cluster /glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libdispatch_la-dfile.o): In function `NC_open':dfile.c:(.text+0x6aa): undefined reference to `MPI_File_open'dfile.c:(.text+0x6d1): undefined reference to `MPI_File_read'dfile.c:(.text+0x6e2): undefined reference to `MPI_File_close'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_create':nc4file.c:(.text+0xd9d): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0xdb0): undefined reference to `MPI_Info_free'nc4file.c:(.text+0xeaa): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0xebc): undefined reference to `MPI_Info_free'nc4file.c:(.text+0xef6): undefined reference to `MPI_Comm_dup'nc4file.c:(.text+0xf2d): undefined reference to `MPI_Info_dup'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_open':nc4file.c:(.text+0x41a9): undefined reference to `MPI_File_open'nc4file.c:(.text+0x41d3): undefined reference to `MPI_File_read'nc4file.c:(.text+0x41e1): undefined reference to `MPI_File_close'nc4file.c:(.text+0x4391): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0x43a1): undefined reference to `MPI_Info_free'nc4file.c:(.text+0x44bc): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0x44c9): undefined reference to `MPI_Info_free'nc4file.c:(.text+0x4552): undefined reference to `MPI_Comm_dup'nc4file.c:(.text+0x4583): undefined reference to `MPI_Info_dup'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_close':nc4file.c:(.text+0x4caf): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0x4cbf): undefined reference to `MPI_Info_free'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `NC4_abort':nc4file.c:(.text+0x500b): undefined reference to `MPI_Comm_free'nc4file.c:(.text+0x501a): undefined reference to `MPI_Info_free'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In function `nc4_put_vara':nc4hdf.c:(.text+0xb68): undefined reference to `mpi_sgi_inplace'nc4hdf.c:(.text+0xb71): undefined reference to `MPI_Allreduce'nc4hdf.c:(.text+0xc49): undefined reference to `mpi_sgi_inplace'nc4hdf.c:(.text+0xc56): undefined reference to `MPI_Allreduce'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5.o): In function `H5_init_library':H5.c:(.text+0x1cf3): undefined reference to `MPI_Initialized'H5.c:(.text+0x1cfd): undefined reference to `MPI_Finalized'H5.c:(.text+0x1d27): undefined reference to `MPI_NULL_COPY_FN'H5.c:(.text+0x1d2c): undefined reference to `MPI_Comm_create_keyval'H5.c:(.text+0x1d43): undefined reference to `MPI_Comm_set_attr'H5.c:(.text+0x1d54): undefined reference to `MPI_Comm_free_keyval'H5.c:(.text+0x1d74): undefined reference to `MPI_Error_string'H5.c:(.text+0x21e5): undefined reference to `MPI_Error_string'H5.c:(.text+0x229a): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_rsp__p0_only__flush_to_min_clean':H5AC.c:(.text+0x2b0f): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x2fff): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_receive_and_apply_clean_list':H5AC.c:(.text+0x3453): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x34b4): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x3614): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x376c): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_broadcast_clean_list':H5AC.c:(.text+0x3b6a): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x3cae): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x3d16): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x3f64): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_rsp__p0_only__flush':H5AC.c:(.text+0x433e): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x43ca): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x450f): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x4590): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x45f1): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x46ba): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x497d): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x4ad8): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x4c6b): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x56dd): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_propagate_and_apply_candidate_list':H5AC.c:(.text+0x62b1): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x6312): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x635f): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x63c8): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x6433): undefined reference to `MPI_Bcast'H5AC.c:(.text+0x64e1): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x6613): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x678d): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x6c07): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x7156): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x725d): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o):H5AC.c:(.text+0x7629): more undefined references to `MPI_Error_string' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5AC.o): In function `H5AC_rsp__dist_md_write__flush':H5AC.c:(.text+0x7ffa): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x8057): undefined reference to `MPI_Barrier'H5AC.c:(.text+0x8579): undefined reference to `MPI_Error_string'H5AC.c:(.text+0x867d): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dchunk.o): In function `H5D__chunk_allocate':H5Dchunk.c:(.text+0x4ab7): undefined reference to `MPI_Type_contiguous'H5Dchunk.c:(.text+0x4ad0): undefined reference to `MPI_Type_contiguous'H5Dchunk.c:(.text+0x4af2): undefined reference to `MPI_Type_create_hindexed'H5Dchunk.c:(.text+0x4b12): undefined reference to `MPI_Type_create_hvector'H5Dchunk.c:(.text+0x4b24): undefined reference to `MPI_Type_commit'H5Dchunk.c:(.text+0x4b36): undefined reference to `MPI_Type_commit'H5Dchunk.c:(.text+0x4bf2): undefined reference to `MPI_Barrier'H5Dchunk.c:(.text+0x4c1c): undefined reference to `MPI_Type_free'H5Dchunk.c:(.text+0x4c2e): undefined reference to `MPI_Type_free'H5Dchunk.c:(.text+0x4eeb): undefined reference to `MPI_Error_string'H5Dchunk.c:(.text+0x4f9c): undefined reference to `MPI_Error_string'H5Dchunk.c:(.text+0x50a2): undefined reference to `MPI_Error_string'H5Dchunk.c:(.text+0x5153): undefined reference to `MPI_Error_string'H5Dchunk.c:(.text+0x525b): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dchunk.o):H5Dchunk.c:(.text+0x54a2): more undefined references to `MPI_Error_string' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dcontig.o): In function `H5D__contig_fill':H5Dcontig.c:(.text+0x547): undefined reference to `MPI_Barrier'H5Dcontig.c:(.text+0x784): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__mpio_opt_possible':H5Dmpio.c:(.text+0x134): undefined reference to `MPI_Allreduce'H5Dmpio.c:(.text+0x24e): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__contig_collective_read':H5Dmpio.c:(.text+0x5ae): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x5c7): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x85a): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x907): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__contig_collective_write':H5Dmpio.c:(.text+0xb9e): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0xbb7): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0xe4a): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0xef7): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__multi_chunk_collective_io':H5Dmpio.c:(.text+0x1295): undefined reference to `MPI_Gather'H5Dmpio.c:(.text+0x12ce): undefined reference to `MPI_Bcast'H5Dmpio.c:(.text+0x1b40): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x2201): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__inter_collective_io':H5Dmpio.c:(.text+0x250d): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x2526): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x2691): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x2744): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__link_chunk_collective_io':H5Dmpio.c:(.text+0x2c15): undefined reference to `MPI_Bcast'H5Dmpio.c:(.text+0x2f38): undefined reference to `MPI_Type_create_struct'H5Dmpio.c:(.text+0x2f4d): undefined reference to `MPI_Type_commit'H5Dmpio.c:(.text+0x2f73): undefined reference to `MPI_Type_create_struct'H5Dmpio.c:(.text+0x2f88): undefined reference to `MPI_Type_commit'H5Dmpio.c:(.text+0x3010): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x3029): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x3043): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x305d): undefined reference to `MPI_Type_free'H5Dmpio.c:(.text+0x30e2): undefined reference to `MPI_Type_free'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o):H5Dmpio.c:(.text+0x310f): more undefined references to `MPI_Type_free' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__link_chunk_collective_io':H5Dmpio.c:(.text+0x3580): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x36ce): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x3797): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x3861): undefined reference to `MPI_Error_string'H5Dmpio.c:(.text+0x3930): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o):H5Dmpio.c:(.text+0x39ff): more undefined references to `MPI_Error_string' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__link_chunk_collective_io':H5Dmpio.c:(.text+0x47a2): undefined reference to `MPI_Allreduce'H5Dmpio.c:(.text+0x47c2): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__chunk_collective_read':H5Dmpio.c:(.text+0x4a01): undefined reference to `MPI_Allreduce'H5Dmpio.c:(.text+0x4c1d): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Dmpio.o): In function `H5D__chunk_collective_write':H5Dmpio.c:(.text+0x4df1): undefined reference to `MPI_Allreduce'H5Dmpio.c:(.text+0x500d): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Eint.o): In function `H5E_walk1_cb':H5Eint.c:(.text+0x190): undefined reference to `MPI_Initialized'H5Eint.c:(.text+0x19a): undefined reference to `MPI_Finalized'H5Eint.c:(.text+0x1b6): undefined reference to `MPI_Comm_rank'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Eint.o): In function `H5E_walk2_cb':H5Eint.c:(.text+0x3e2): undefined reference to `MPI_Initialized'H5Eint.c:(.text+0x3ec): undefined reference to `MPI_Finalized'H5Eint.c:(.text+0x408): undefined reference to `MPI_Comm_rank'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpi.o): In function `H5FD_mpi_comm_info_dup':H5FDmpi.c:(.text+0x173): undefined reference to `MPI_Comm_dup'H5FDmpi.c:(.text+0x197): undefined reference to `MPI_Info_dup'H5FDmpi.c:(.text+0x209): undefined reference to `MPI_Comm_free'H5FDmpi.c:(.text+0x21a): undefined reference to `MPI_Info_free'H5FDmpi.c:(.text+0x23c): undefined reference to `MPI_Error_string'H5FDmpi.c:(.text+0x2e9): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpi.o): In function `H5FD_mpi_comm_info_free':H5FDmpi.c:(.text+0x3eb): undefined reference to `MPI_Comm_free'H5FDmpi.c:(.text+0x3f9): undefined reference to `MPI_Info_free'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5Pget_fapl_mpio':H5FDmpio.c:(.text+0x35f): undefined reference to `MPI_Comm_free'H5FDmpio.c:(.text+0x390): undefined reference to `MPI_Comm_dup'H5FDmpio.c:(.text+0x3ba): undefined reference to `MPI_Info_dup'H5FDmpio.c:(.text+0x3f6): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x4a3): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_set_mpio_atomicity':H5FDmpio.c:(.text+0x1558): undefined reference to `MPI_File_set_atomicity'H5FDmpio.c:(.text+0x157e): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_get_mpio_atomicity':H5FDmpio.c:(.text+0x1639): undefined reference to `MPI_File_get_atomicity'H5FDmpio.c:(.text+0x1679): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_open':H5FDmpio.c:(.text+0x17d8): undefined reference to `MPI_File_open'H5FDmpio.c:(.text+0x17ee): undefined reference to `MPI_Comm_rank'H5FDmpio.c:(.text+0x1804): undefined reference to `MPI_Comm_size'H5FDmpio.c:(.text+0x1859): undefined reference to `MPI_File_get_size'H5FDmpio.c:(.text+0x187b): undefined reference to `MPI_Bcast'H5FDmpio.c:(.text+0x189d): undefined reference to `MPI_File_set_size'H5FDmpio.c:(.text+0x18ae): undefined reference to `MPI_Barrier'H5FDmpio.c:(.text+0x18f0): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x198a): undefined reference to `MPI_File_close'H5FDmpio.c:(.text+0x199d): undefined reference to `MPI_Comm_free'H5FDmpio.c:(.text+0x19ae): undefined reference to `MPI_Info_free'H5FDmpio.c:(.text+0x19dc): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x1a85): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x1b2e): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x1c25): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x1cce): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o):H5FDmpio.c:(.text+0x1d77): more undefined references to `MPI_Error_string' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_close':H5FDmpio.c:(.text+0x1f41): undefined reference to `MPI_File_close'H5FDmpio.c:(.text+0x1f7c): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_read':H5FDmpio.c:(.text+0x213e): undefined reference to `MPI_File_read_at'H5FDmpio.c:(.text+0x215a): undefined reference to `MPI_Get_elements'H5FDmpio.c:(.text+0x2170): undefined reference to `MPI_Type_size'H5FDmpio.c:(.text+0x2265): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2312): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x23bf): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x24e7): undefined reference to `MPI_File_set_view'H5FDmpio.c:(.text+0x2538): undefined reference to `MPI_File_read_at_all'H5FDmpio.c:(.text+0x255f): undefined reference to `MPI_File_read_at'H5FDmpio.c:(.text+0x2584): undefined reference to `MPI_File_set_view'H5FDmpio.c:(.text+0x25a4): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2651): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x26fe): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x27f2): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_write':H5FDmpio.c:(.text+0x2a6e): undefined reference to `MPI_File_write_at'H5FDmpio.c:(.text+0x2a8a): undefined reference to `MPI_Get_elements'H5FDmpio.c:(.text+0x2aa0): undefined reference to `MPI_Type_size'H5FDmpio.c:(.text+0x2b7d): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2c2a): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2cd7): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2dff): undefined reference to `MPI_File_set_view'H5FDmpio.c:(.text+0x2e50): undefined reference to `MPI_File_write_at_all'H5FDmpio.c:(.text+0x2e77): undefined reference to `MPI_File_write_at'H5FDmpio.c:(.text+0x2e9c): undefined reference to `MPI_File_set_view'H5FDmpio.c:(.text+0x2ebc): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x2f69): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x3016): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x310a): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_flush':H5FDmpio.c:(.text+0x3322): undefined reference to `MPI_File_sync'H5FDmpio.c:(.text+0x3348): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5FDmpio.o): In function `H5FD_mpio_truncate':H5FDmpio.c:(.text+0x3424): undefined reference to `MPI_File_set_size'H5FDmpio.c:(.text+0x3435): undefined reference to `MPI_Barrier'H5FDmpio.c:(.text+0x3467): undefined reference to `MPI_Error_string'H5FDmpio.c:(.text+0x351a): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Smpio.o): In function `H5S_obtain_datatype':H5Smpio.c:(.text+0xc0): undefined reference to `MPI_Type_create_hindexed'H5Smpio.c:(.text+0x17d): undefined reference to `MPI_Type_create_hvector'H5Smpio.c:(.text+0x18f): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x1c4): undefined reference to `MPI_Type_create_struct'H5Smpio.c:(.text+0x1ef): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x260): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x310): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x330): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x4c4): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x592): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x5d2): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x687): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x733): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x7d6): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x7ef): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Smpio.o): In function `H5S_mpio_space_type':H5Smpio.c:(.text+0xe49): undefined reference to `MPI_Type_contiguous'H5Smpio.c:(.text+0xf6b): undefined reference to `MPI_Type_create_hindexed'H5Smpio.c:(.text+0xf8b): undefined reference to `MPI_Type_commit'H5Smpio.c:(.text+0xfb0): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x1275): undefined reference to `MPI_Type_contiguous'H5Smpio.c:(.text+0x1352): undefined reference to `MPI_Type_create_hindexed'H5Smpio.c:(.text+0x1362): undefined reference to `MPI_Type_commit'H5Smpio.c:(.text+0x1374): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x141b): undefined reference to `MPI_Type_contiguous'H5Smpio.c:(.text+0x147f): undefined reference to `MPI_Type_commit'H5Smpio.c:(.text+0x14aa): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x163c): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x172c): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x1886): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x1af9): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x1baf): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Smpio.o):H5Smpio.c:(.text+0x1cc0): more undefined references to `MPI_Error_string' follow/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Smpio.o): In function `H5S_mpio_space_type':H5Smpio.c:(.text+0x246c): undefined reference to `MPI_Type_contiguous'H5Smpio.c:(.text+0x24ce): undefined reference to `MPI_Type_vector'H5Smpio.c:(.text+0x24dd): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x251e): undefined reference to `MPI_Type_get_extent'H5Smpio.c:(.text+0x2561): undefined reference to `MPI_Type_create_hindexed'H5Smpio.c:(.text+0x2570): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x258f): undefined reference to `MPI_Type_create_resized'H5Smpio.c:(.text+0x259e): undefined reference to `MPI_Type_free'H5Smpio.c:(.text+0x25dd): undefined reference to `MPI_Type_commit'H5Smpio.c:(.text+0x26d1): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x2788): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x283f): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x2917): undefined reference to `MPI_Error_string'H5Smpio.c:(.text+0x29ce): undefined reference to `MPI_Error_string'/glade/u/apps/ch/opt/netcdf-mpi/4.5.0/mpt/2.16/intel/17.0.1/lib/libhdf5.a(H5Smpio.o):H5Smpio.c:(.text+0x2a85): more undefined references to `MPI_Error_string' follow/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Waitall'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Abort'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Waitany'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Wtime'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Op_free'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Comm_create'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Group_incl'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Attr_get'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Init'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Alltoallv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Cart_create'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Scatterv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Iprobe'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Testall'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Allgatherv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Comm_group'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Cart_sub'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Comm_split'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Send'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Rsend'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Irecv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Recv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Address'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Comm_compare'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Reduce'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Pack'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Gatherv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Wait'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Allgather'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Op_create'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Pack_size'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Unpack'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Test'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Isend'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Alltoall'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Finalize'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Sendrecv'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Group_free'/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so: undefined reference to `MPI_Type_indexed'Makefile:143: recipe for target '../gen_domain' failedgmake: *** [../gen_domain] Error 1