Hi Jie,
pmid should be total pressure (including moisture) and pdry should be the dry mass which excludes such tracers. They should be relatively similar to one another, although they diverge in regions of high moisture content such as the tropics where atmospheric q can contribute to the integrated mass.
Really, you should be only be adjusting PS given the model's hybrid coordinate. Adjusting PS will then adjust the pmid values based on p(k) = a(k)*p0 + b(k)*ps. Courtney is correct that PS is the variable needed here, not PSL which is just a diagnostic and not used predictively by the model itself. However, over ocean (where tropical cyclones exist) PS = PSL, which makes life easier (one doesn't need to consider PHIS).
Another thing to note is that if you are modifying the state (ex: to add a tropical cyclone) you need to adjust *all* the state fields to be in gradient wind balance. I.e., changing PS changes geostrophic U,V winds which change T via thermal wind, etc.) -- there are a few possible ways to do this, but one starting point is Reed and Jablonowski (2011,
An Analytic Vortex Initialization Technique for Idealized Tropical Cyclone Studies in AGCMs) who derive analytic state field perturbations that can be used to initialize a cyclonic vortex.
hope that helps.