Thanks for your reply. My original "run-cam.csh" file is listed below.
Hope to hear from you, thanks.
#! /usr/bin/csh -f
#-----------------------------------------------------------------------
## IBM
##------------
##
## This is an example script to build and run the default CAM configuration
## on an IBM SP. The default configuration is T42L26, Eulerian dynamics,
## CLM2 land model, and CSIM4 ice model.
##
## Setting LoadLeveler options for batch queue submission.
## @ class is the queue in which to run the job.
## To see a list of available queues, type "llclass" interactively.
## @ node is the number of nodes. @tasks_per_node should be set to 1 because
## of the hybrid OpenMP/MPI configuration of CAM. The number of nodes should
## be a power of 2, up to a max of 16 for T42.
## @ output and @error are the names of file written to the directory from
## which the script is submitted containing STDOUT and STDERR respectively
## @ job_type = parallel declares that multiple nodes will be used.
## @ network.MPI: Has to do with network connection between nodes. Best to leave alone.
## @ node_usage = not_shared acquires dedicated access to nodes for the job.
## @ queue tells load leveler to submit the job
#@ class = com_reg
#@ account_no = XXXXXX
#@ node = 2
#@ tasks_per_node = 1
#@ output = out.$(jobid)
#@ error = out.$(jobid)
#@ job_type = parallel
#@ network.MPI = csss,not_shared,us
#@ node_usage = not_shared
#@ wall_clock_limit = 21600
#@ queue
## POE Environment. Set these for interactive jobs. They're ignored by LoadLeveler
## MP_NODES is the number of nodes. The number chosen should be a power of 2, up to a max o
f 16 for T42.
setenv MP_NODES 2
setenv MP_TASKS_PER_NODE 1
setenv MP_EUILIB us
setenv MP_RMPOOL 1
# TH: bug fix suggested by Brian Eaton 1/24/03
unsetenv MP_PROCS
# must be set equal to (CPUs-per-node / tasks_per_node)
setenv OMP_NUM_THREADS 4
## suggestion from Jim Edwards to reintroduce XLSMPOPTS on 11/13/03
setenv XLSMPOPTS "stack=256000000"
setenv AIXTHREAD_SCOPE S
setenv MALLOCMULTIHEAP true
setenv OMP_DYNAMIC false
## Do our best to get sufficient stack memory
limit stacksize unlimited
## netCDF stuff
setenv INC_NETCDF /usr/local/include
setenv LIB_NETCDF /usr/local/lib64/r4i4
## ROOT OF CAM DISTRIBUTION - probably needs to be customized.
## Contains the source code for the CAM distribution.
## (the root directory contains the subdirectory "models")
#set camroot = /fs/cgd/data0/$LOGNAME/cam2_0
set camroot = /home/blackforest/taoz/cam3.0/cam1
## ROOT OF CAM DATA DISTRIBUTION - needs to be customized unless running at NCAR.
## Contains the initial and boundary data for the CAM distribution.
## (the root directory contains the subdirectories "atm" and "lnd")
#setenv CSMDATA /fs/cgd/csm/inputdata
setenv CSMDATA /home/blackforest/taoz/cam3.0/inputdata
## Set compile options
# $dycore is the dynamical core: sld, eul, or fv.
# $resolution: for sld or eul: 128x256, 64x128,32x64,or 8x16; for fv: 2x2.5, 4x5, or 10x15
# $usr_src specifies location of user-modified files: 'none', or valid directory.
# $caseid if for notes to myself - keep it short!!!
#set dycore = sld
#set dycore = fv
set dycore = eul
#set usr_src = /fs/cgd/data0/$LOGNAME/t31_icealbedos
#set usr_src = /fs/cgd/home0/$LOGNAME/empty
set usr_src = /home/blackforest/taoz/cam3.0/empty
#set caseid = ialb
set caseid = test1
##zt added
## Default namelist settings:
## $case is the case identifier for this run. It will be placed in the namelist.
## $nelapse is the number of timesteps to integrate, or number of days if negative.
if ( $dycore == 'fv' ) then
set resolution = 2x2.5
# set resolution = 1x1.25
# set resolution = 4x5
set nelapse = -490
# set nelapse = -578
# set nelapse = -245
else
set resolution = 64x128
# set resolution = 128x256
# set resolution = 48x96
##zt
# set nelapse = -490
##zt
set nelapse = -1095
endif
set nlev = 26
set case = ${dycore}${resolution}_$caseid
#
## Default namelist settings:
## $case is the case identifier for this run. It will be placed in the namelist.
## $runtype is the run type: initial, restart, or branch.
## $nelapse is the number of timesteps to integrate, or number of days if negative.
#set case = camrun
#set runtype = initial
#set nelapse = -1
#
##zt added
## $wrkdir is a working directory where the model will be built and run.
## $blddir is the directory where model will be compiled.
## $rundir is the directory where the model will be run.
## $cfgdir is the directory containing the CAM configuration scripts.
set wrkdir = /ptmp/$LOGNAME
set blddir = $wrkdir/$case/bld
set rundir = $wrkdir/$case
set cfgdir = $camroot/models/atm/cam/bld
## Ensure that run and build directories exist
mkdir -p $rundir || echo "cannot create $rundir" && exit 1
mkdir -p $blddir || echo "cannot create $blddir" && exit 1
## If an executable doesn't exist, build one.
if ( ! -x $blddir/cam ) then
cd $blddir || echo "cd $blddir failed" && exit 1
## Control case
$cfgdir/configure
-dyn $dycore
-res $resolution
-usr_src $usr_src
-nlev $nlev
|| echo "configure failed" && exit 1
# $cfgdir/configure || echo "configure failed" && exit 1
#
echo "building CAM in $blddir ..."
rm -f Depends
gmake -j4 >&! MAKE.out || echo "CAM build failed: see $blddir/MAKE.out" && exit 1
else
echo Found $blddir/cam - not building a new one.
endif
## Create the namelist
cd $blddir || echo "cd $blddir failed" && exit 1
echo "Building the namelist."
##zt
#$cfgdir/build-namelist -s -case $case -runtype $runtype -o $rundir/namelist
# -namelist "&camexp nelapse=$nelapse /" || echo "build-namelist failed" && exit 1
#
$cfgdir/build-namelist -s
-case $case
-runtype initial
-o $rundir/namelist
-namelist "&camexp nelapse=$nelapse,mss_irt=0 /"
|| echo "build-namelist failed" && exit 1
##zt
## Run CAM
#cd $rundir || echo "cd $rundir failed" && exit 1
#echo "running CAM in $rundir"
#poe $blddir/cam < namelist || echo "CAM run failed" && exit 1
#exit 0
#
## Run CAM
cd $rundir
touch output.txt
echo "Beg:: "`date` `perl -e 'print time();'` >> output.txt
poe time $blddir/cam < namelist >>& output.txt
set year = `grep restart file output.txt | tail -1 | sed s/^.*.r.// | sed s/-.*\$//`
#cat namelist | sed s/nsrest.*=.*0/nsrest = 1/ > temp.namelist
#mv temp.namelist namelist
##zt
#if ( $year < 200 ) then
if ( $year < 5 ) then
##zt
echo Year is ${year}, resubmitting.
llsubmit run-cam.csh
else
touch $case.done
# setenv CASE $case
# /fs/cgd/home0/jmccaa/scripts/mkclimo.csh
endif
echo "End:: "`date` `perl -e 'print time();'` >> output.txt
chmod +x $rundir/run-cam.csh
exit 0
